2015-09-29T05:56:51.966Z,1443506211.966 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T05:56:51.969Z,1443506211.969 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T05:56:51.969Z,1443506211.969 [SyncHandler](INFO): Protected caller Thread ID is 761
2015-09-29T05:56:51.970Z,1443506211.970 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T05:56:51.971Z,1443506211.971 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T05:56:51.972Z,1443506211.972 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T05:56:51.974Z,1443506211.974 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T05:56:51.991Z,1443506211.991 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T05:56:51.995Z,1443506211.995 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T05:56:51.996Z,1443506211.996 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T05:56:51.996Z,1443506211.996 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T05:56:51.999Z,1443506211.999 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T05:56:51.000Z,1443506212.000 [logger ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T05:56:52.002Z,1443506212.002 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T05:56:52.002Z,1443506212.002 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T05:56:52.006Z,1443506212.006 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T05:56:52.433Z,1443506212.433 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T05:56:52.435Z,1443506212.435 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T05:56:52.640Z,1443506212.640 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T05:56:52.642Z,1443506212.642 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T05:56:52.795Z,1443506212.795 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T05:56:52.795Z,1443506212.795 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T05:56:52.948Z,1443506212.948 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T05:56:52.949Z,1443506212.949 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T05:56:53.045Z,1443506213.045 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T05:56:53.276Z,1443506213.276 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T05:56:53.277Z,1443506213.277 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T05:56:53.376Z,1443506213.376 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T05:56:53.377Z,1443506213.377 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T05:56:53.707Z,1443506213.707 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T05:56:53.707Z,1443506213.707 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T05:56:54.099Z,1443506214.099 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T05:56:54.100Z,1443506214.100 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T05:56:54.441Z,1443506214.441 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T05:56:54.442Z,1443506214.442 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T05:56:55.016Z,1443506215.016 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T05:56:55.017Z,1443506215.017 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T05:56:55.244Z,1443506215.244 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T05:56:55.245Z,1443506215.245 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T05:56:55.354Z,1443506215.354 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T05:56:55.354Z,1443506215.354 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T05:56:55.847Z,1443506215.847 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T05:56:55.848Z,1443506215.848 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T05:56:56.021Z,1443506216.021 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T05:56:56.023Z,1443506216.023 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T05:56:56.024Z,1443506216.024 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T05:56:56.028Z,1443506216.028 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T05:56:56.103Z,1443506216.103 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T05:56:56.233Z,1443506216.233 [VerticalControl] Loaded
2015-09-29T05:56:56.233Z,1443506216.233 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T05:56:56.234Z,1443506216.234 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T05:56:56.311Z,1443506216.311 [HorizontalControl] Loaded
2015-09-29T05:56:56.311Z,1443506216.311 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T05:56:56.312Z,1443506216.312 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T05:56:56.318Z,1443506216.318 [SpeedControl] Loaded
2015-09-29T05:56:56.318Z,1443506216.318 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T05:56:56.319Z,1443506216.319 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T05:56:56.320Z,1443506216.320 [LoopControl] Loaded
2015-09-29T05:56:56.320Z,1443506216.320 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T05:56:56.320Z,1443506216.320 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T05:56:56.321Z,1443506216.321 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T05:56:56.482Z,1443506216.482 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T05:56:56.495Z,1443506216.495 [SBIT] Loaded
2015-09-29T05:56:56.495Z,1443506216.495 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T05:56:56.496Z,1443506216.496 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T05:56:56.527Z,1443506216.527 [IBIT] Loaded
2015-09-29T05:56:56.528Z,1443506216.528 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T05:56:56.530Z,1443506216.530 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T05:56:56.676Z,1443506216.676 [CBIT] Loaded
2015-09-29T05:56:56.677Z,1443506216.677 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T05:56:56.677Z,1443506216.677 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T05:56:56.678Z,1443506216.678 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T05:56:56.716Z,1443506216.716 [DepthRateCalculator] Loaded
2015-09-29T05:56:56.717Z,1443506216.717 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T05:56:56.722Z,1443506216.722 [PitchRateCalculator] Loaded
2015-09-29T05:56:56.723Z,1443506216.723 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T05:56:56.735Z,1443506216.735 [SpeedCalculator] Loaded
2015-09-29T05:56:56.735Z,1443506216.735 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T05:56:56.754Z,1443506216.754 [TempGradientCalculator] Loaded
2015-09-29T05:56:56.754Z,1443506216.754 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T05:56:56.772Z,1443506216.772 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T05:56:56.772Z,1443506216.772 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T05:56:56.778Z,1443506216.778 [YawRateCalculator] Loaded
2015-09-29T05:56:56.778Z,1443506216.778 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T05:56:56.779Z,1443506216.779 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T05:56:56.780Z,1443506216.780 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T05:56:56.896Z,1443506216.896 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T05:56:56.896Z,1443506216.896 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T05:56:56.896Z,1443506216.896 [StratificationFrontDetector] Loaded
2015-09-29T05:56:56.897Z,1443506216.897 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T05:56:56.897Z,1443506216.897 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T05:56:56.898Z,1443506216.898 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T05:56:57.192Z,1443506217.192 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T05:56:57.192Z,1443506217.192 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T05:56:57.319Z,1443506217.319 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T05:56:57.319Z,1443506217.319 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T05:56:57.379Z,1443506217.379 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T05:56:57.379Z,1443506217.379 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T05:56:57.398Z,1443506217.398 [NavChart] Loaded
2015-09-29T05:56:57.398Z,1443506217.398 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T05:56:57.404Z,1443506217.404 [UniversalFixResidualReporter] Loaded
2015-09-29T05:56:57.404Z,1443506217.404 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T05:56:57.405Z,1443506217.405 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T05:56:57.405Z,1443506217.405 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T05:56:57.414Z,1443506217.414 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T05:56:57.414Z,1443506217.414 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T05:56:57.713Z,1443506217.713 [CTD_NeilBrown] Loaded
2015-09-29T05:56:57.714Z,1443506217.714 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T05:56:57.715Z,1443506217.715 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T05:56:57.715Z,1443506217.715 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T05:56:57.729Z,1443506217.729 [ISUS] Loaded
2015-09-29T05:56:57.730Z,1443506217.730 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T05:56:57.745Z,1443506217.745 [PAR_Licor] Loaded
2015-09-29T05:56:57.745Z,1443506217.745 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T05:56:57.800Z,1443506217.800 [WetLabsBB2FL] Loaded
2015-09-29T05:56:57.801Z,1443506217.801 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T05:56:57.802Z,1443506217.802 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T05:56:57.802Z,1443506217.802 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T05:56:57.803Z,1443506217.803 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T05:56:57.803Z,1443506217.803 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T05:56:58.474Z,1443506218.474 [AHRS_sp3003D] Loaded
2015-09-29T05:56:58.474Z,1443506218.474 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T05:56:58.642Z,1443506218.642 [DataOverHttps] Loaded
2015-09-29T05:56:58.642Z,1443506218.642 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T05:56:58.657Z,1443506218.657 [Depth_Keller] Loaded
2015-09-29T05:56:58.657Z,1443506218.657 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T05:56:58.662Z,1443506218.662 [DropWeight] Loaded
2015-09-29T05:56:58.663Z,1443506218.663 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T05:56:58.811Z,1443506218.811 [DVL_micro] Loaded
2015-09-29T05:56:58.812Z,1443506218.812 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T05:56:58.914Z,1443506218.914 [NAL9602] Loaded
2015-09-29T05:56:58.914Z,1443506218.914 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T05:56:58.960Z,1443506218.960 [Onboard] Loaded
2015-09-29T05:56:58.960Z,1443506218.960 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T05:56:58.973Z,1443506218.973 [Radio_Surface] Loaded
2015-09-29T05:56:58.973Z,1443506218.973 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T05:56:58.974Z,1443506218.974 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T05:56:58.975Z,1443506218.975 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T05:56:59.128Z,1443506219.128 [DAT] Loaded
2015-09-29T05:56:59.128Z,1443506219.128 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T05:56:59.135Z,1443506219.135 [SCPI] Loaded
2015-09-29T05:56:59.136Z,1443506219.136 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T05:56:59.136Z,1443506219.136 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T05:56:59.137Z,1443506219.137 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T05:56:59.269Z,1443506219.269 [BuoyancyServo] Loaded
2015-09-29T05:56:59.269Z,1443506219.269 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T05:56:59.282Z,1443506219.282 [ElevatorServo] Loaded
2015-09-29T05:56:59.283Z,1443506219.283 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T05:56:59.295Z,1443506219.295 [MassServo] Loaded
2015-09-29T05:56:59.295Z,1443506219.295 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T05:56:59.308Z,1443506219.308 [RudderServo] Loaded
2015-09-29T05:56:59.308Z,1443506219.308 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T05:56:59.320Z,1443506219.320 [ThrusterServo] Loaded
2015-09-29T05:56:59.320Z,1443506219.320 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T05:56:59.321Z,1443506219.321 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T05:56:59.321Z,1443506219.321 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T05:56:59.516Z,1443506219.516 [InternalSim] Loaded
2015-09-29T05:56:59.517Z,1443506219.517 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T05:56:59.517Z,1443506219.517 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T05:56:59.518Z,1443506219.518 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T05:56:59.559Z,1443506219.559 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T05:56:59.563Z,1443506219.563 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T05:56:59.564Z,1443506219.564 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T05:56:59.570Z,1443506219.570 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T05:56:59.572Z,1443506219.572 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T05:56:59.572Z,1443506219.572 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T05:56:59.577Z,1443506219.577 [Supervisor](INFO): Main Thread ID is 760
2015-09-29T05:56:59.577Z,1443506219.577 [Supervisor](DEBUG): Running supervisor.
2015-09-29T05:56:59.578Z,1443506219.578 [CommandLine ThreadHandler](INFO): Handler Thread ID is 814
2015-09-29T05:56:59.580Z,1443506219.580 [controlThread ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T05:56:59.581Z,1443506219.581 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T05:56:59.582Z,1443506219.582 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T05:56:59.584Z,1443506219.584 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T05:56:59.584Z,1443506219.584 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T05:56:59.585Z,1443506219.585 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T05:56:59.585Z,1443506219.585 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T05:56:59.586Z,1443506219.586 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T05:56:59.587Z,1443506219.587 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T05:56:59.588Z,1443506219.588 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T05:56:59.589Z,1443506219.589 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T05:56:59.589Z,1443506219.589 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T05:56:59.590Z,1443506219.590 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T05:56:59.590Z,1443506219.590 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T05:56:59.590Z,1443506219.590 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T05:56:59.591Z,1443506219.591 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T05:56:59.591Z,1443506219.591 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T05:56:59.591Z,1443506219.591 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T05:56:59.592Z,1443506219.592 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T05:56:59.592Z,1443506219.592 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T05:56:59.593Z,1443506219.593 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T05:56:59.594Z,1443506219.594 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T05:56:59.594Z,1443506219.594 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T05:56:59.595Z,1443506219.595 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T05:56:59.595Z,1443506219.595 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T05:56:59.596Z,1443506219.596 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T05:56:59.596Z,1443506219.596 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T05:56:59.596Z,1443506219.596 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T05:56:59.597Z,1443506219.597 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T05:56:59.601Z,1443506219.601 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T05:56:59.620Z,1443506219.620 [logger ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T05:56:59.652Z,1443506219.652 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T05:56:59.712Z,1443506219.712 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T05:56:59.720Z,1443506219.720 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T05:56:59.760Z,1443506219.760 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T05:56:59.768Z,1443506219.768 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T05:56:59.772Z,1443506219.772 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T05:56:59.772Z,1443506219.772 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T05:56:59.772Z,1443506219.772 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T05:56:59.773Z,1443506219.773 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T05:56:59.773Z,1443506219.773 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T05:56:59.773Z,1443506219.773 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T05:56:59.773Z,1443506219.773 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T05:56:59.774Z,1443506219.774 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T05:56:59.781Z,1443506219.781 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T05:56:59.836Z,1443506219.836 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T05:56:59.854Z,1443506219.854 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T05:56:59.875Z,1443506219.875 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T05:56:59.927Z,1443506219.927 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T05:56:59.928Z,1443506219.928 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T05:56:59.975Z,1443506219.975 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T05:56:59.978Z,1443506219.978 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T05:56:59.992Z,1443506219.992 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T05:57:00.010Z,1443506220.010 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T05:57:00.016Z,1443506220.016 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T05:57:00.232Z,1443506220.232 [DVL_micro](INFO): Initializing
2015-09-29T05:57:00.380Z,1443506220.380 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T05:57:00.388Z,1443506220.388 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T05:57:00.490Z,1443506220.490 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T05:57:00.525Z,1443506220.525 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T05:57:00.530Z,1443506220.530 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T05:57:00.548Z,1443506220.548 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T05:57:00.567Z,1443506220.567 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T05:57:00.798Z,1443506220.798 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T05:57:00.799Z,1443506220.799 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T05:57:09.551Z,1443506229.551 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:09.870Z,1443506229.870 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:10.031Z,1443506230.031 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:10.431Z,1443506230.431 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.004100
2015-09-29T05:57:10.435Z,1443506230.435 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:10.829Z,1443506230.829 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:11.229Z,1443506231.229 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:11.628Z,1443506231.628 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:12.029Z,1443506232.029 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:12.429Z,1443506232.429 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:12.828Z,1443506232.828 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:13.227Z,1443506233.227 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:13.628Z,1443506233.628 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:14.031Z,1443506234.031 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:14.432Z,1443506234.432 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:14.830Z,1443506234.830 [NAL9602](INFO): No messages in MT queue
2015-09-29T05:57:14.831Z,1443506234.831 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:15.230Z,1443506235.230 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:15.631Z,1443506235.631 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:16.030Z,1443506236.030 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:16.432Z,1443506236.432 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:16.831Z,1443506236.831 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:17.230Z,1443506237.230 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:17.630Z,1443506237.630 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:18.031Z,1443506238.031 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:18.431Z,1443506238.431 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:18.830Z,1443506238.830 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:19.230Z,1443506239.230 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:19.630Z,1443506239.630 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:20.030Z,1443506240.030 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:20.044Z,1443506240.044 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T05:57:20.433Z,1443506240.433 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:20.830Z,1443506240.830 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:21.231Z,1443506241.231 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:21.630Z,1443506241.630 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:22.032Z,1443506242.032 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:22.431Z,1443506242.431 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:22.831Z,1443506242.831 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:23.232Z,1443506243.232 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:23.631Z,1443506243.631 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:57:24.031Z,1443506244.031 [D