2015-09-29T05:49:00.814Z,1443505740.814 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T05:49:00.817Z,1443505740.817 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T05:49:00.818Z,1443505740.818 [SyncHandler](INFO): Protected caller Thread ID is 761
2015-09-29T05:49:00.818Z,1443505740.818 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T05:49:00.820Z,1443505740.820 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T05:49:00.820Z,1443505740.820 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T05:49:00.823Z,1443505740.823 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T05:49:00.835Z,1443505740.835 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T05:49:00.840Z,1443505740.840 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T05:49:00.840Z,1443505740.840 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T05:49:00.841Z,1443505740.841 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T05:49:00.844Z,1443505740.844 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T05:49:00.844Z,1443505740.844 [logger ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T05:49:00.846Z,1443505740.846 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T05:49:00.847Z,1443505740.847 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T05:49:00.851Z,1443505740.851 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T05:49:01.247Z,1443505741.247 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T05:49:01.249Z,1443505741.249 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T05:49:01.441Z,1443505741.441 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T05:49:01.442Z,1443505741.442 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T05:49:01.585Z,1443505741.585 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T05:49:01.585Z,1443505741.585 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T05:49:01.733Z,1443505741.733 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T05:49:01.733Z,1443505741.733 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T05:49:01.828Z,1443505741.828 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T05:49:02.049Z,1443505742.049 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T05:49:02.050Z,1443505742.050 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T05:49:02.145Z,1443505742.145 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T05:49:02.145Z,1443505742.145 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T05:49:02.457Z,1443505742.457 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T05:49:02.458Z,1443505742.458 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T05:49:02.857Z,1443505742.857 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T05:49:02.858Z,1443505742.858 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T05:49:03.209Z,1443505743.209 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T05:49:03.211Z,1443505743.211 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T05:49:03.808Z,1443505743.808 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T05:49:03.809Z,1443505743.809 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T05:49:04.063Z,1443505744.063 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T05:49:04.064Z,1443505744.064 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T05:49:04.185Z,1443505744.185 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T05:49:04.185Z,1443505744.185 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T05:49:04.698Z,1443505744.698 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T05:49:04.699Z,1443505744.699 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T05:49:04.825Z,1443505744.825 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T05:49:04.827Z,1443505744.827 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T05:49:04.827Z,1443505744.827 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T05:49:04.832Z,1443505744.832 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T05:49:04.906Z,1443505744.906 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T05:49:05.040Z,1443505745.040 [VerticalControl] Loaded
2015-09-29T05:49:05.040Z,1443505745.040 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T05:49:05.041Z,1443505745.041 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T05:49:05.121Z,1443505745.121 [HorizontalControl] Loaded
2015-09-29T05:49:05.122Z,1443505745.122 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T05:49:05.122Z,1443505745.122 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T05:49:05.128Z,1443505745.128 [SpeedControl] Loaded
2015-09-29T05:49:05.128Z,1443505745.128 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T05:49:05.129Z,1443505745.129 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T05:49:05.130Z,1443505745.130 [LoopControl] Loaded
2015-09-29T05:49:05.130Z,1443505745.130 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T05:49:05.130Z,1443505745.130 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T05:49:05.131Z,1443505745.131 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T05:49:05.290Z,1443505745.290 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T05:49:05.303Z,1443505745.303 [SBIT] Loaded
2015-09-29T05:49:05.303Z,1443505745.303 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T05:49:05.304Z,1443505745.304 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T05:49:05.337Z,1443505745.337 [IBIT] Loaded
2015-09-29T05:49:05.337Z,1443505745.337 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T05:49:05.340Z,1443505745.340 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T05:49:05.493Z,1443505745.493 [CBIT] Loaded
2015-09-29T05:49:05.494Z,1443505745.494 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T05:49:05.494Z,1443505745.494 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T05:49:05.495Z,1443505745.495 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T05:49:05.536Z,1443505745.536 [DepthRateCalculator] Loaded
2015-09-29T05:49:05.536Z,1443505745.536 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T05:49:05.542Z,1443505745.542 [PitchRateCalculator] Loaded
2015-09-29T05:49:05.542Z,1443505745.542 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T05:49:05.558Z,1443505745.558 [SpeedCalculator] Loaded
2015-09-29T05:49:05.558Z,1443505745.558 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T05:49:05.575Z,1443505745.575 [TempGradientCalculator] Loaded
2015-09-29T05:49:05.576Z,1443505745.576 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T05:49:05.597Z,1443505745.597 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T05:49:05.597Z,1443505745.597 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T05:49:05.603Z,1443505745.603 [YawRateCalculator] Loaded
2015-09-29T05:49:05.603Z,1443505745.603 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T05:49:05.603Z,1443505745.603 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T05:49:05.604Z,1443505745.604 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T05:49:05.730Z,1443505745.730 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T05:49:05.731Z,1443505745.731 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T05:49:05.731Z,1443505745.731 [StratificationFrontDetector] Loaded
2015-09-29T05:49:05.731Z,1443505745.731 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T05:49:05.732Z,1443505745.732 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T05:49:05.732Z,1443505745.732 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T05:49:06.023Z,1443505746.023 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T05:49:06.024Z,1443505746.024 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T05:49:06.152Z,1443505746.152 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T05:49:06.153Z,1443505746.153 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T05:49:06.217Z,1443505746.217 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T05:49:06.217Z,1443505746.217 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T05:49:06.235Z,1443505746.235 [NavChart] Loaded
2015-09-29T05:49:06.235Z,1443505746.235 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T05:49:06.244Z,1443505746.244 [UniversalFixResidualReporter] Loaded
2015-09-29T05:49:06.245Z,1443505746.245 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T05:49:06.245Z,1443505746.245 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T05:49:06.246Z,1443505746.246 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T05:49:06.254Z,1443505746.254 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T05:49:06.255Z,1443505746.255 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T05:49:06.557Z,1443505746.557 [CTD_NeilBrown] Loaded
2015-09-29T05:49:06.557Z,1443505746.557 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T05:49:06.560Z,1443505746.560 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T05:49:06.560Z,1443505746.560 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T05:49:06.573Z,1443505746.573 [ISUS] Loaded
2015-09-29T05:49:06.573Z,1443505746.573 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T05:49:06.588Z,1443505746.588 [PAR_Licor] Loaded
2015-09-29T05:49:06.589Z,1443505746.589 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T05:49:06.648Z,1443505746.648 [WetLabsBB2FL] Loaded
2015-09-29T05:49:06.648Z,1443505746.648 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T05:49:06.652Z,1443505746.652 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T05:49:06.652Z,1443505746.652 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T05:49:06.653Z,1443505746.653 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T05:49:06.654Z,1443505746.654 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T05:49:07.392Z,1443505747.392 [AHRS_sp3003D] Loaded
2015-09-29T05:49:07.392Z,1443505747.392 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T05:49:07.590Z,1443505747.590 [DataOverHttps] Loaded
2015-09-29T05:49:07.590Z,1443505747.590 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T05:49:07.603Z,1443505747.603 [Depth_Keller] Loaded
2015-09-29T05:49:07.604Z,1443505747.604 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T05:49:07.609Z,1443505747.609 [DropWeight] Loaded
2015-09-29T05:49:07.609Z,1443505747.609 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T05:49:07.765Z,1443505747.765 [DVL_micro] Loaded
2015-09-29T05:49:07.765Z,1443505747.765 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T05:49:07.873Z,1443505747.873 [NAL9602] Loaded
2015-09-29T05:49:07.873Z,1443505747.873 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T05:49:07.920Z,1443505747.920 [Onboard] Loaded
2015-09-29T05:49:07.920Z,1443505747.920 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T05:49:07.932Z,1443505747.932 [Radio_Surface] Loaded
2015-09-29T05:49:07.932Z,1443505747.932 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T05:49:07.936Z,1443505747.936 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T05:49:07.936Z,1443505747.936 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T05:49:08.095Z,1443505748.095 [DAT] Loaded
2015-09-29T05:49:08.095Z,1443505748.095 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T05:49:08.102Z,1443505748.102 [SCPI] Loaded
2015-09-29T05:49:08.102Z,1443505748.102 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T05:49:08.103Z,1443505748.103 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T05:49:08.103Z,1443505748.103 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T05:49:08.237Z,1443505748.237 [BuoyancyServo] Loaded
2015-09-29T05:49:08.237Z,1443505748.237 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T05:49:08.254Z,1443505748.254 [ElevatorServo] Loaded
2015-09-29T05:49:08.254Z,1443505748.254 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T05:49:08.266Z,1443505748.266 [MassServo] Loaded
2015-09-29T05:49:08.266Z,1443505748.266 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T05:49:08.278Z,1443505748.278 [RudderServo] Loaded
2015-09-29T05:49:08.279Z,1443505748.279 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T05:49:08.294Z,1443505748.294 [ThrusterServo] Loaded
2015-09-29T05:49:08.294Z,1443505748.294 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T05:49:08.295Z,1443505748.295 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T05:49:08.295Z,1443505748.295 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T05:49:08.495Z,1443505748.495 [InternalSim] Loaded
2015-09-29T05:49:08.495Z,1443505748.495 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T05:49:08.495Z,1443505748.495 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T05:49:08.496Z,1443505748.496 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T05:49:08.540Z,1443505748.540 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T05:49:08.545Z,1443505748.545 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T05:49:08.545Z,1443505748.545 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T05:49:08.552Z,1443505748.552 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T05:49:08.556Z,1443505748.556 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T05:49:08.556Z,1443505748.556 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T05:49:08.561Z,1443505748.561 [Supervisor](INFO): Main Thread ID is 760
2015-09-29T05:49:08.561Z,1443505748.561 [Supervisor](DEBUG): Running supervisor.
2015-09-29T05:49:08.562Z,1443505748.562 [CommandLine ThreadHandler](INFO): Handler Thread ID is 814
2015-09-29T05:49:08.568Z,1443505748.568 [controlThread ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T05:49:08.569Z,1443505748.569 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T05:49:08.570Z,1443505748.570 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T05:49:08.572Z,1443505748.572 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T05:49:08.572Z,1443505748.572 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T05:49:08.573Z,1443505748.573 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T05:49:08.573Z,1443505748.573 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T05:49:08.574Z,1443505748.574 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T05:49:08.575Z,1443505748.575 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T05:49:08.576Z,1443505748.576 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T05:49:08.577Z,1443505748.577 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T05:49:08.577Z,1443505748.577 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T05:49:08.578Z,1443505748.578 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T05:49:08.578Z,1443505748.578 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T05:49:08.578Z,1443505748.578 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T05:49:08.579Z,1443505748.579 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T05:49:08.579Z,1443505748.579 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T05:49:08.579Z,1443505748.579 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T05:49:08.579Z,1443505748.579 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T05:49:08.580Z,1443505748.580 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T05:49:08.581Z,1443505748.581 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T05:49:08.581Z,1443505748.581 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T05:49:08.582Z,1443505748.582 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T05:49:08.582Z,1443505748.582 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T05:49:08.583Z,1443505748.583 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T05:49:08.583Z,1443505748.583 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T05:49:08.583Z,1443505748.583 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T05:49:08.584Z,1443505748.584 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T05:49:08.584Z,1443505748.584 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T05:49:08.589Z,1443505748.589 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T05:49:08.624Z,1443505748.624 [logger ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T05:49:08.712Z,1443505748.712 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T05:49:08.721Z,1443505748.721 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T05:49:08.785Z,1443505748.785 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T05:49:08.799Z,1443505748.799 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T05:49:08.811Z,1443505748.811 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T05:49:08.862Z,1443505748.862 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T05:49:08.893Z,1443505748.893 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T05:49:08.893Z,1443505748.893 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T05:49:08.893Z,1443505748.893 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T05:49:08.893Z,1443505748.893 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T05:49:08.893Z,1443505748.893 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T05:49:08.894Z,1443505748.894 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T05:49:08.894Z,1443505748.894 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T05:49:08.894Z,1443505748.894 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T05:49:08.957Z,1443505748.957 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T05:49:08.972Z,1443505748.972 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T05:49:08.973Z,1443505748.973 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T05:49:09.072Z,1443505749.072 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T05:49:09.073Z,1443505749.073 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T05:49:09.100Z,1443505749.100 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T05:49:09.103Z,1443505749.103 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T05:49:09.134Z,1443505749.134 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T05:49:09.137Z,1443505749.137 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T05:49:09.153Z,1443505749.153 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T05:49:09.364Z,1443505749.364 [DVL_micro](INFO): Initializing
2015-09-29T05:49:09.509Z,1443505749.509 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T05:49:09.532Z,1443505749.532 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T05:49:09.644Z,1443505749.644 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T05:49:09.668Z,1443505749.668 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T05:49:09.674Z,1443505749.674 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T05:49:09.692Z,1443505749.692 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T05:49:09.697Z,1443505749.697 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T05:49:09.923Z,1443505749.923 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T05:49:09.924Z,1443505749.924 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T05:49:19.055Z,1443505759.055 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:19.419Z,1443505759.419 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:19.527Z,1443505759.527 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:19.919Z,1443505759.919 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003100
2015-09-29T05:49:19.922Z,1443505759.922 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:20.317Z,1443505760.317 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:20.717Z,1443505760.717 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:21.118Z,1443505761.118 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:21.517Z,1443505761.517 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:21.917Z,1443505761.917 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:22.317Z,1443505762.317 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:22.716Z,1443505762.716 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:23.122Z,1443505763.122 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:23.523Z,1443505763.523 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:23.921Z,1443505763.921 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:24.318Z,1443505764.318 [NAL9602](INFO): No messages in MT queue
2015-09-29T05:49:24.319Z,1443505764.319 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:24.726Z,1443505764.726 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:25.119Z,1443505765.119 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:25.522Z,1443505765.522 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:25.922Z,1443505765.922 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:26.323Z,1443505766.323 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:26.722Z,1443505766.722 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:27.118Z,1443505767.118 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:27.519Z,1443505767.519 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:27.919Z,1443505767.919 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:28.323Z,1443505768.323 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:28.722Z,1443505768.722 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:29.122Z,1443505769.122 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:29.135Z,1443505769.135 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T05:49:29.522Z,1443505769.522 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:29.922Z,1443505769.922 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:30.322Z,1443505770.322 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:30.733Z,1443505770.733 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:31.120Z,1443505771.120 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:31.522Z,1443505771.522 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:31.923Z,1443505771.923 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:32.322Z,1443505772.322 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:32.723Z,1443505772.723 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:33.122Z,1443505773.122 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:49:33.522Z,1443505773.522 [D