2015-09-29T05:41:04.775Z,1443505264.775 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T05:41:04.778Z,1443505264.778 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T05:41:04.779Z,1443505264.779 [SyncHandler](INFO): Protected caller Thread ID is 761
2015-09-29T05:41:04.779Z,1443505264.779 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T05:41:04.784Z,1443505264.784 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T05:41:04.784Z,1443505264.784 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T05:41:04.787Z,1443505264.787 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T05:41:04.799Z,1443505264.799 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T05:41:04.804Z,1443505264.804 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T05:41:04.804Z,1443505264.804 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T05:41:04.805Z,1443505264.805 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T05:41:04.808Z,1443505264.808 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T05:41:04.808Z,1443505264.808 [logger ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T05:41:04.810Z,1443505264.810 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T05:41:04.811Z,1443505264.811 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T05:41:04.815Z,1443505264.815 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T05:41:05.211Z,1443505265.211 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T05:41:05.213Z,1443505265.213 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T05:41:05.401Z,1443505265.401 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T05:41:05.403Z,1443505265.403 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T05:41:05.554Z,1443505265.554 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T05:41:05.554Z,1443505265.554 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T05:41:05.705Z,1443505265.705 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T05:41:05.705Z,1443505265.705 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T05:41:05.800Z,1443505265.800 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T05:41:06.021Z,1443505266.021 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T05:41:06.021Z,1443505266.021 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T05:41:06.116Z,1443505266.116 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T05:41:06.117Z,1443505266.117 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T05:41:06.429Z,1443505266.429 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T05:41:06.430Z,1443505266.430 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T05:41:06.829Z,1443505266.829 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T05:41:06.830Z,1443505266.830 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T05:41:07.181Z,1443505267.181 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T05:41:07.183Z,1443505267.183 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T05:41:07.777Z,1443505267.777 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T05:41:07.778Z,1443505267.778 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T05:41:08.009Z,1443505268.009 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T05:41:08.010Z,1443505268.010 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T05:41:08.123Z,1443505268.123 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T05:41:08.124Z,1443505268.124 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T05:41:08.636Z,1443505268.636 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T05:41:08.636Z,1443505268.636 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T05:41:08.807Z,1443505268.807 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T05:41:08.809Z,1443505268.809 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T05:41:08.810Z,1443505268.810 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T05:41:08.814Z,1443505268.814 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T05:41:08.888Z,1443505268.888 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T05:41:09.021Z,1443505269.021 [VerticalControl] Loaded
2015-09-29T05:41:09.021Z,1443505269.021 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T05:41:09.022Z,1443505269.022 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T05:41:09.102Z,1443505269.102 [HorizontalControl] Loaded
2015-09-29T05:41:09.102Z,1443505269.102 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T05:41:09.103Z,1443505269.103 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T05:41:09.109Z,1443505269.109 [SpeedControl] Loaded
2015-09-29T05:41:09.109Z,1443505269.109 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T05:41:09.110Z,1443505269.110 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T05:41:09.110Z,1443505269.110 [LoopControl] Loaded
2015-09-29T05:41:09.111Z,1443505269.111 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T05:41:09.111Z,1443505269.111 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T05:41:09.112Z,1443505269.112 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T05:41:09.274Z,1443505269.274 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T05:41:09.286Z,1443505269.286 [SBIT] Loaded
2015-09-29T05:41:09.287Z,1443505269.287 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T05:41:09.287Z,1443505269.287 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T05:41:09.321Z,1443505269.321 [IBIT] Loaded
2015-09-29T05:41:09.321Z,1443505269.321 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T05:41:09.323Z,1443505269.323 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T05:41:09.477Z,1443505269.477 [CBIT] Loaded
2015-09-29T05:41:09.478Z,1443505269.478 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T05:41:09.478Z,1443505269.478 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T05:41:09.479Z,1443505269.479 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T05:41:09.516Z,1443505269.516 [DepthRateCalculator] Loaded
2015-09-29T05:41:09.516Z,1443505269.516 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T05:41:09.526Z,1443505269.526 [PitchRateCalculator] Loaded
2015-09-29T05:41:09.526Z,1443505269.526 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T05:41:09.537Z,1443505269.537 [SpeedCalculator] Loaded
2015-09-29T05:41:09.538Z,1443505269.538 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T05:41:09.555Z,1443505269.555 [TempGradientCalculator] Loaded
2015-09-29T05:41:09.555Z,1443505269.555 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T05:41:09.576Z,1443505269.576 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T05:41:09.576Z,1443505269.576 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T05:41:09.582Z,1443505269.582 [YawRateCalculator] Loaded
2015-09-29T05:41:09.582Z,1443505269.582 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T05:41:09.582Z,1443505269.582 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T05:41:09.583Z,1443505269.583 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T05:41:09.703Z,1443505269.703 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T05:41:09.703Z,1443505269.703 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T05:41:09.703Z,1443505269.703 [StratificationFrontDetector] Loaded
2015-09-29T05:41:09.704Z,1443505269.704 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T05:41:09.704Z,1443505269.704 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T05:41:09.705Z,1443505269.705 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T05:41:09.994Z,1443505269.994 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T05:41:09.995Z,1443505269.995 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T05:41:10.128Z,1443505270.128 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T05:41:10.128Z,1443505270.128 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T05:41:10.189Z,1443505270.189 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T05:41:10.189Z,1443505270.189 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T05:41:10.210Z,1443505270.210 [NavChart] Loaded
2015-09-29T05:41:10.211Z,1443505270.211 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T05:41:10.216Z,1443505270.216 [UniversalFixResidualReporter] Loaded
2015-09-29T05:41:10.216Z,1443505270.216 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T05:41:10.217Z,1443505270.217 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T05:41:10.217Z,1443505270.217 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T05:41:10.226Z,1443505270.226 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T05:41:10.226Z,1443505270.226 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T05:41:10.525Z,1443505270.525 [CTD_NeilBrown] Loaded
2015-09-29T05:41:10.525Z,1443505270.525 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T05:41:10.528Z,1443505270.528 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T05:41:10.528Z,1443505270.528 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T05:41:10.541Z,1443505270.541 [ISUS] Loaded
2015-09-29T05:41:10.541Z,1443505270.541 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T05:41:10.560Z,1443505270.560 [PAR_Licor] Loaded
2015-09-29T05:41:10.560Z,1443505270.560 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T05:41:10.615Z,1443505270.615 [WetLabsBB2FL] Loaded
2015-09-29T05:41:10.616Z,1443505270.616 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T05:41:10.620Z,1443505270.620 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T05:41:10.620Z,1443505270.620 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T05:41:10.621Z,1443505270.621 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T05:41:10.622Z,1443505270.622 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T05:41:11.349Z,1443505271.349 [AHRS_sp3003D] Loaded
2015-09-29T05:41:11.350Z,1443505271.350 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T05:41:11.543Z,1443505271.543 [DataOverHttps] Loaded
2015-09-29T05:41:11.544Z,1443505271.544 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T05:41:11.557Z,1443505271.557 [Depth_Keller] Loaded
2015-09-29T05:41:11.557Z,1443505271.557 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T05:41:11.562Z,1443505271.562 [DropWeight] Loaded
2015-09-29T05:41:11.563Z,1443505271.563 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T05:41:11.718Z,1443505271.718 [DVL_micro] Loaded
2015-09-29T05:41:11.718Z,1443505271.718 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T05:41:11.822Z,1443505271.822 [NAL9602] Loaded
2015-09-29T05:41:11.822Z,1443505271.822 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T05:41:11.873Z,1443505271.873 [Onboard] Loaded
2015-09-29T05:41:11.873Z,1443505271.873 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T05:41:11.885Z,1443505271.885 [Radio_Surface] Loaded
2015-09-29T05:41:11.885Z,1443505271.885 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T05:41:11.888Z,1443505271.888 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T05:41:11.888Z,1443505271.888 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T05:41:12.046Z,1443505272.046 [DAT] Loaded
2015-09-29T05:41:12.047Z,1443505272.047 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T05:41:12.053Z,1443505272.053 [SCPI] Loaded
2015-09-29T05:41:12.053Z,1443505272.053 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T05:41:12.054Z,1443505272.054 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T05:41:12.055Z,1443505272.055 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T05:41:12.184Z,1443505272.184 [BuoyancyServo] Loaded
2015-09-29T05:41:12.185Z,1443505272.185 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T05:41:12.197Z,1443505272.197 [ElevatorServo] Loaded
2015-09-29T05:41:12.198Z,1443505272.198 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T05:41:12.213Z,1443505272.213 [MassServo] Loaded
2015-09-29T05:41:12.214Z,1443505272.214 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T05:41:12.226Z,1443505272.226 [RudderServo] Loaded
2015-09-29T05:41:12.226Z,1443505272.226 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T05:41:12.241Z,1443505272.241 [ThrusterServo] Loaded
2015-09-29T05:41:12.241Z,1443505272.241 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T05:41:12.242Z,1443505272.242 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T05:41:12.243Z,1443505272.243 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T05:41:12.444Z,1443505272.444 [InternalSim] Loaded
2015-09-29T05:41:12.445Z,1443505272.445 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T05:41:12.445Z,1443505272.445 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T05:41:12.446Z,1443505272.446 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T05:41:12.489Z,1443505272.489 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T05:41:12.493Z,1443505272.493 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T05:41:12.494Z,1443505272.494 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T05:41:12.505Z,1443505272.505 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T05:41:12.508Z,1443505272.508 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T05:41:12.508Z,1443505272.508 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T05:41:12.513Z,1443505272.513 [Supervisor](INFO): Main Thread ID is 760
2015-09-29T05:41:12.513Z,1443505272.513 [Supervisor](DEBUG): Running supervisor.
2015-09-29T05:41:12.514Z,1443505272.514 [CommandLine ThreadHandler](INFO): Handler Thread ID is 814
2015-09-29T05:41:12.520Z,1443505272.520 [controlThread ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T05:41:12.521Z,1443505272.521 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T05:41:12.522Z,1443505272.522 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T05:41:12.524Z,1443505272.524 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T05:41:12.524Z,1443505272.524 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T05:41:12.525Z,1443505272.525 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T05:41:12.525Z,1443505272.525 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T05:41:12.526Z,1443505272.526 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T05:41:12.527Z,1443505272.527 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T05:41:12.528Z,1443505272.528 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T05:41:12.529Z,1443505272.529 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T05:41:12.529Z,1443505272.529 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T05:41:12.530Z,1443505272.530 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T05:41:12.530Z,1443505272.530 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T05:41:12.530Z,1443505272.530 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T05:41:12.531Z,1443505272.531 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T05:41:12.531Z,1443505272.531 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T05:41:12.531Z,1443505272.531 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T05:41:12.531Z,1443505272.531 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T05:41:12.532Z,1443505272.532 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T05:41:12.533Z,1443505272.533 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T05:41:12.533Z,1443505272.533 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T05:41:12.534Z,1443505272.534 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T05:41:12.534Z,1443505272.534 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T05:41:12.535Z,1443505272.535 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T05:41:12.535Z,1443505272.535 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T05:41:12.535Z,1443505272.535 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T05:41:12.536Z,1443505272.536 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T05:41:12.536Z,1443505272.536 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T05:41:12.541Z,1443505272.541 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T05:41:12.576Z,1443505272.576 [logger ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T05:41:12.664Z,1443505272.664 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T05:41:12.673Z,1443505272.673 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T05:41:12.737Z,1443505272.737 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T05:41:12.751Z,1443505272.751 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T05:41:12.763Z,1443505272.763 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T05:41:12.803Z,1443505272.803 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T05:41:12.805Z,1443505272.805 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T05:41:12.806Z,1443505272.806 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T05:41:12.806Z,1443505272.806 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T05:41:12.806Z,1443505272.806 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T05:41:12.806Z,1443505272.806 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T05:41:12.807Z,1443505272.807 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T05:41:12.807Z,1443505272.807 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T05:41:12.807Z,1443505272.807 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T05:41:12.888Z,1443505272.888 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T05:41:12.898Z,1443505272.898 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T05:41:12.899Z,1443505272.899 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T05:41:12.959Z,1443505272.959 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T05:41:12.960Z,1443505272.960 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T05:41:12.979Z,1443505272.979 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T05:41:13.010Z,1443505273.010 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T05:41:13.032Z,1443505273.032 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T05:41:13.036Z,1443505273.036 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T05:41:13.049Z,1443505273.049 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T05:41:13.272Z,1443505273.272 [DVL_micro](INFO): Initializing
2015-09-29T05:41:13.433Z,1443505273.433 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T05:41:13.457Z,1443505273.457 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T05:41:13.576Z,1443505273.576 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T05:41:13.582Z,1443505273.582 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T05:41:13.613Z,1443505273.613 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T05:41:13.626Z,1443505273.626 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T05:41:13.636Z,1443505273.636 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T05:41:13.884Z,1443505273.884 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T05:41:13.885Z,1443505273.885 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T05:41:22.993Z,1443505282.993 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:23.324Z,1443505283.324 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:23.466Z,1443505283.466 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:23.867Z,1443505283.867 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003100
2015-09-29T05:41:23.870Z,1443505283.870 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:24.265Z,1443505284.265 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:24.665Z,1443505284.665 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:25.067Z,1443505285.067 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:25.465Z,1443505285.465 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:25.865Z,1443505285.865 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:26.264Z,1443505286.264 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:26.664Z,1443505286.664 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:27.065Z,1443505287.065 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:27.465Z,1443505287.465 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:27.865Z,1443505287.865 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:28.265Z,1443505288.265 [NAL9602](INFO): No messages in MT queue
2015-09-29T05:41:28.266Z,1443505288.266 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:28.665Z,1443505288.665 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:29.065Z,1443505289.065 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:29.464Z,1443505289.464 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:29.865Z,1443505289.865 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:30.265Z,1443505290.265 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:30.665Z,1443505290.665 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:31.065Z,1443505291.065 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:31.465Z,1443505291.465 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:31.864Z,1443505291.864 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:32.265Z,1443505292.265 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:32.665Z,1443505292.665 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:33.065Z,1443505293.065 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:33.079Z,1443505293.079 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T05:41:33.465Z,1443505293.465 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:33.865Z,1443505293.865 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:34.265Z,1443505294.265 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:34.666Z,1443505294.666 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:35.066Z,1443505295.066 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:35.465Z,1443505295.465 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:35.865Z,1443505295.865 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:36.265Z,1443505296.265 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:36.665Z,1443505296.665 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:37.065Z,1443505297.065 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:41:37.465Z,1443505297.465 [D