2015-09-29T05:25:13.109Z,1443504313.109 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T05:25:13.112Z,1443504313.112 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T05:25:13.113Z,1443504313.113 [SyncHandler](INFO): Protected caller Thread ID is 762
2015-09-29T05:25:13.113Z,1443504313.113 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T05:25:13.115Z,1443504313.115 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T05:25:13.115Z,1443504313.115 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T05:25:13.118Z,1443504313.118 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T05:25:13.130Z,1443504313.130 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T05:25:13.135Z,1443504313.135 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T05:25:13.135Z,1443504313.135 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T05:25:13.136Z,1443504313.136 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T05:25:13.139Z,1443504313.139 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T05:25:13.139Z,1443504313.139 [logger ThreadHandler](INFO): Protected caller Thread ID is 765
2015-09-29T05:25:13.141Z,1443504313.141 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T05:25:13.142Z,1443504313.142 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T05:25:13.145Z,1443504313.145 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T05:25:13.528Z,1443504313.528 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T05:25:13.530Z,1443504313.530 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T05:25:13.722Z,1443504313.722 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T05:25:13.724Z,1443504313.724 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T05:25:13.868Z,1443504313.868 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T05:25:13.868Z,1443504313.868 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T05:25:14.016Z,1443504314.016 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T05:25:14.016Z,1443504314.016 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T05:25:14.111Z,1443504314.111 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T05:25:14.331Z,1443504314.331 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T05:25:14.332Z,1443504314.332 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T05:25:14.427Z,1443504314.427 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T05:25:14.428Z,1443504314.428 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T05:25:14.740Z,1443504314.740 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T05:25:14.741Z,1443504314.741 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T05:25:15.144Z,1443504315.144 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T05:25:15.145Z,1443504315.145 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T05:25:15.496Z,1443504315.496 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T05:25:15.498Z,1443504315.498 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T05:25:16.093Z,1443504316.093 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T05:25:16.093Z,1443504316.093 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T05:25:16.324Z,1443504316.324 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T05:25:16.325Z,1443504316.325 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T05:25:16.444Z,1443504316.444 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T05:25:16.445Z,1443504316.445 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T05:25:16.959Z,1443504316.959 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T05:25:16.960Z,1443504316.960 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T05:25:17.150Z,1443504317.150 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T05:25:17.152Z,1443504317.152 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T05:25:17.153Z,1443504317.153 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T05:25:17.157Z,1443504317.157 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T05:25:17.231Z,1443504317.231 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T05:25:17.364Z,1443504317.364 [VerticalControl] Loaded
2015-09-29T05:25:17.364Z,1443504317.364 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T05:25:17.365Z,1443504317.365 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T05:25:17.445Z,1443504317.445 [HorizontalControl] Loaded
2015-09-29T05:25:17.445Z,1443504317.445 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T05:25:17.446Z,1443504317.446 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T05:25:17.452Z,1443504317.452 [SpeedControl] Loaded
2015-09-29T05:25:17.452Z,1443504317.452 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T05:25:17.453Z,1443504317.453 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T05:25:17.453Z,1443504317.453 [LoopControl] Loaded
2015-09-29T05:25:17.453Z,1443504317.453 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T05:25:17.454Z,1443504317.454 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T05:25:17.455Z,1443504317.455 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T05:25:17.613Z,1443504317.613 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T05:25:17.625Z,1443504317.625 [SBIT] Loaded
2015-09-29T05:25:17.625Z,1443504317.625 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T05:25:17.626Z,1443504317.626 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T05:25:17.660Z,1443504317.660 [IBIT] Loaded
2015-09-29T05:25:17.660Z,1443504317.660 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T05:25:17.662Z,1443504317.662 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T05:25:17.816Z,1443504317.816 [CBIT] Loaded
2015-09-29T05:25:17.816Z,1443504317.816 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T05:25:17.816Z,1443504317.816 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T05:25:17.817Z,1443504317.817 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T05:25:17.858Z,1443504317.858 [DepthRateCalculator] Loaded
2015-09-29T05:25:17.859Z,1443504317.859 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T05:25:17.864Z,1443504317.864 [PitchRateCalculator] Loaded
2015-09-29T05:25:17.864Z,1443504317.864 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T05:25:17.876Z,1443504317.876 [SpeedCalculator] Loaded
2015-09-29T05:25:17.876Z,1443504317.876 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T05:25:17.897Z,1443504317.897 [TempGradientCalculator] Loaded
2015-09-29T05:25:17.897Z,1443504317.897 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T05:25:17.914Z,1443504317.914 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T05:25:17.915Z,1443504317.915 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T05:25:17.920Z,1443504317.920 [YawRateCalculator] Loaded
2015-09-29T05:25:17.920Z,1443504317.920 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T05:25:17.921Z,1443504317.921 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T05:25:17.921Z,1443504317.921 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T05:25:18.040Z,1443504318.040 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T05:25:18.041Z,1443504318.041 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T05:25:18.041Z,1443504318.041 [StratificationFrontDetector] Loaded
2015-09-29T05:25:18.041Z,1443504318.041 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T05:25:18.042Z,1443504318.042 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T05:25:18.042Z,1443504318.042 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T05:25:18.341Z,1443504318.341 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T05:25:18.342Z,1443504318.342 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T05:25:18.471Z,1443504318.471 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T05:25:18.471Z,1443504318.471 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T05:25:18.535Z,1443504318.535 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T05:25:18.535Z,1443504318.535 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T05:25:18.553Z,1443504318.553 [NavChart] Loaded
2015-09-29T05:25:18.553Z,1443504318.553 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T05:25:18.558Z,1443504318.558 [UniversalFixResidualReporter] Loaded
2015-09-29T05:25:18.558Z,1443504318.558 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T05:25:18.559Z,1443504318.559 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T05:25:18.560Z,1443504318.560 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T05:25:18.569Z,1443504318.569 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T05:25:18.569Z,1443504318.569 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T05:25:18.867Z,1443504318.867 [CTD_NeilBrown] Loaded
2015-09-29T05:25:18.868Z,1443504318.868 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T05:25:18.871Z,1443504318.871 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T05:25:18.871Z,1443504318.871 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T05:25:18.884Z,1443504318.884 [ISUS] Loaded
2015-09-29T05:25:18.884Z,1443504318.884 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T05:25:18.899Z,1443504318.899 [PAR_Licor] Loaded
2015-09-29T05:25:18.899Z,1443504318.899 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T05:25:18.954Z,1443504318.954 [WetLabsBB2FL] Loaded
2015-09-29T05:25:18.959Z,1443504318.959 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T05:25:18.963Z,1443504318.963 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T05:25:18.963Z,1443504318.963 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T05:25:18.964Z,1443504318.964 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T05:25:18.965Z,1443504318.965 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T05:25:19.697Z,1443504319.697 [AHRS_sp3003D] Loaded
2015-09-29T05:25:19.697Z,1443504319.697 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T05:25:19.886Z,1443504319.886 [DataOverHttps] Loaded
2015-09-29T05:25:19.886Z,1443504319.886 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T05:25:19.900Z,1443504319.900 [Depth_Keller] Loaded
2015-09-29T05:25:19.900Z,1443504319.900 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T05:25:19.905Z,1443504319.905 [DropWeight] Loaded
2015-09-29T05:25:19.905Z,1443504319.905 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T05:25:20.061Z,1443504320.061 [DVL_micro] Loaded
2015-09-29T05:25:20.061Z,1443504320.061 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T05:25:20.166Z,1443504320.166 [NAL9602] Loaded
2015-09-29T05:25:20.166Z,1443504320.166 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T05:25:20.217Z,1443504320.217 [Onboard] Loaded
2015-09-29T05:25:20.217Z,1443504320.217 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T05:25:20.229Z,1443504320.229 [Radio_Surface] Loaded
2015-09-29T05:25:20.229Z,1443504320.229 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T05:25:20.231Z,1443504320.231 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T05:25:20.231Z,1443504320.231 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T05:25:20.390Z,1443504320.390 [DAT] Loaded
2015-09-29T05:25:20.390Z,1443504320.390 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T05:25:20.396Z,1443504320.396 [SCPI] Loaded
2015-09-29T05:25:20.397Z,1443504320.397 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T05:25:20.397Z,1443504320.397 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T05:25:20.398Z,1443504320.398 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T05:25:20.533Z,1443504320.533 [BuoyancyServo] Loaded
2015-09-29T05:25:20.534Z,1443504320.534 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T05:25:20.546Z,1443504320.546 [ElevatorServo] Loaded
2015-09-29T05:25:20.547Z,1443504320.547 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T05:25:20.558Z,1443504320.558 [MassServo] Loaded
2015-09-29T05:25:20.559Z,1443504320.559 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T05:25:20.574Z,1443504320.574 [RudderServo] Loaded
2015-09-29T05:25:20.575Z,1443504320.575 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T05:25:20.586Z,1443504320.586 [ThrusterServo] Loaded
2015-09-29T05:25:20.586Z,1443504320.586 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T05:25:20.587Z,1443504320.587 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T05:25:20.587Z,1443504320.587 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T05:25:20.785Z,1443504320.785 [InternalSim] Loaded
2015-09-29T05:25:20.785Z,1443504320.785 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T05:25:20.786Z,1443504320.786 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T05:25:20.787Z,1443504320.787 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T05:25:20.830Z,1443504320.830 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T05:25:20.834Z,1443504320.834 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T05:25:20.835Z,1443504320.835 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T05:25:20.841Z,1443504320.841 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T05:25:20.843Z,1443504320.843 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T05:25:20.843Z,1443504320.843 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 814
2015-09-29T05:25:20.848Z,1443504320.848 [Supervisor](INFO): Main Thread ID is 761
2015-09-29T05:25:20.848Z,1443504320.848 [Supervisor](DEBUG): Running supervisor.
2015-09-29T05:25:20.849Z,1443504320.849 [CommandLine ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T05:25:20.855Z,1443504320.855 [controlThread ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T05:25:20.856Z,1443504320.856 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T05:25:20.857Z,1443504320.857 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T05:25:20.859Z,1443504320.859 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T05:25:20.859Z,1443504320.859 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T05:25:20.860Z,1443504320.860 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T05:25:20.860Z,1443504320.860 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T05:25:20.861Z,1443504320.861 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T05:25:20.862Z,1443504320.862 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T05:25:20.863Z,1443504320.863 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T05:25:20.864Z,1443504320.864 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T05:25:20.864Z,1443504320.864 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T05:25:20.865Z,1443504320.865 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T05:25:20.865Z,1443504320.865 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T05:25:20.865Z,1443504320.865 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T05:25:20.866Z,1443504320.866 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T05:25:20.866Z,1443504320.866 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T05:25:20.866Z,1443504320.866 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T05:25:20.866Z,1443504320.866 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T05:25:20.867Z,1443504320.867 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T05:25:20.868Z,1443504320.868 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T05:25:20.868Z,1443504320.868 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T05:25:20.869Z,1443504320.869 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T05:25:20.869Z,1443504320.869 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T05:25:20.870Z,1443504320.870 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T05:25:20.870Z,1443504320.870 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T05:25:20.870Z,1443504320.870 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T05:25:20.871Z,1443504320.871 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T05:25:20.871Z,1443504320.871 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T05:25:20.877Z,1443504320.877 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T05:25:20.899Z,1443504320.899 [logger ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T05:25:20.939Z,1443504320.939 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T05:25:20.000Z,1443504321.000 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T05:25:21.052Z,1443504321.052 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T05:25:21.062Z,1443504321.062 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T05:25:21.074Z,1443504321.074 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 821
2015-09-29T05:25:21.088Z,1443504321.088 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T05:25:21.090Z,1443504321.090 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T05:25:21.090Z,1443504321.090 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T05:25:21.090Z,1443504321.090 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T05:25:21.090Z,1443504321.090 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T05:25:21.091Z,1443504321.091 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T05:25:21.091Z,1443504321.091 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T05:25:21.091Z,1443504321.091 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T05:25:21.092Z,1443504321.092 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T05:25:21.107Z,1443504321.107 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T05:25:21.135Z,1443504321.135 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T05:25:21.136Z,1443504321.136 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T05:25:21.235Z,1443504321.235 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T05:25:21.236Z,1443504321.236 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T05:25:21.259Z,1443504321.259 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T05:25:21.289Z,1443504321.289 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T05:25:21.316Z,1443504321.316 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T05:25:21.319Z,1443504321.319 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T05:25:21.344Z,1443504321.344 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T05:25:21.539Z,1443504321.539 [DVL_micro](INFO): Initializing
2015-09-29T05:25:21.707Z,1443504321.707 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T05:25:21.719Z,1443504321.719 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T05:25:21.819Z,1443504321.819 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T05:25:21.831Z,1443504321.831 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T05:25:21.841Z,1443504321.841 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T05:25:21.854Z,1443504321.854 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T05:25:21.879Z,1443504321.879 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T05:25:22.141Z,1443504322.141 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T05:25:22.142Z,1443504322.142 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T05:25:31.258Z,1443504331.258 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:31.608Z,1443504331.608 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:31.745Z,1443504331.745 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:32.149Z,1443504332.149 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.005800
2015-09-29T05:25:32.152Z,1443504332.152 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:32.544Z,1443504332.544 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:32.945Z,1443504332.945 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:33.344Z,1443504333.344 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:33.744Z,1443504333.744 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:34.144Z,1443504334.144 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:34.544Z,1443504334.544 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:34.943Z,1443504334.943 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:35.344Z,1443504335.344 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:35.748Z,1443504335.748 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:36.154Z,1443504336.154 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:36.548Z,1443504336.548 [NAL9602](INFO): No messages in MT queue
2015-09-29T05:25:36.549Z,1443504336.549 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:36.943Z,1443504336.943 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:37.344Z,1443504337.344 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:37.743Z,1443504337.743 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:38.144Z,1443504338.144 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:38.544Z,1443504338.544 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:38.943Z,1443504338.943 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:39.345Z,1443504339.345 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:39.743Z,1443504339.743 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:40.144Z,1443504340.144 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:40.544Z,1443504340.544 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:40.945Z,1443504340.945 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:41.344Z,1443504341.344 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:41.360Z,1443504341.360 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T05:25:41.743Z,1443504341.743 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:42.144Z,1443504342.144 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:42.544Z,1443504342.544 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:42.943Z,1443504342.943 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:43.344Z,1443504343.344 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:43.744Z,1443504343.744 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:44.145Z,1443504344.145 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:44.544Z,1443504344.544 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:44.944Z,1443504344.944 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:45.344Z,1443504345.344 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:25:45.744Z,1443504345.744 [D