2015-09-29T05:17:19.817Z,1443503839.817 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T05:17:19.820Z,1443503839.820 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T05:17:19.820Z,1443503839.820 [SyncHandler](INFO): Protected caller Thread ID is 761
2015-09-29T05:17:19.821Z,1443503839.821 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T05:17:19.824Z,1443503839.824 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T05:17:19.824Z,1443503839.824 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T05:17:19.827Z,1443503839.827 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T05:17:19.840Z,1443503839.840 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T05:17:19.844Z,1443503839.844 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T05:17:19.844Z,1443503839.844 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T05:17:19.845Z,1443503839.845 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T05:17:19.848Z,1443503839.848 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T05:17:19.848Z,1443503839.848 [logger ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T05:17:19.850Z,1443503839.850 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T05:17:19.851Z,1443503839.851 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T05:17:19.854Z,1443503839.854 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T05:17:20.271Z,1443503840.271 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T05:17:20.273Z,1443503840.273 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T05:17:20.468Z,1443503840.468 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T05:17:20.470Z,1443503840.470 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T05:17:20.616Z,1443503840.616 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T05:17:20.617Z,1443503840.617 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T05:17:20.768Z,1443503840.768 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T05:17:20.769Z,1443503840.769 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T05:17:20.865Z,1443503840.865 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T05:17:21.092Z,1443503841.092 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T05:17:21.093Z,1443503841.093 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T05:17:21.193Z,1443503841.193 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T05:17:21.194Z,1443503841.194 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T05:17:21.521Z,1443503841.521 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T05:17:21.521Z,1443503841.521 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T05:17:21.938Z,1443503841.938 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T05:17:21.939Z,1443503841.939 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T05:17:22.311Z,1443503842.311 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T05:17:22.313Z,1443503842.313 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T05:17:22.939Z,1443503842.939 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T05:17:22.940Z,1443503842.940 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T05:17:23.181Z,1443503843.181 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T05:17:23.182Z,1443503843.182 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T05:17:23.299Z,1443503843.299 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T05:17:23.300Z,1443503843.300 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T05:17:23.869Z,1443503843.869 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T05:17:23.870Z,1443503843.870 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T05:17:23.995Z,1443503843.995 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T05:17:23.997Z,1443503843.997 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T05:17:23.997Z,1443503843.997 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T05:17:24.002Z,1443503844.002 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T05:17:24.079Z,1443503844.079 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T05:17:24.223Z,1443503844.223 [VerticalControl] Loaded
2015-09-29T05:17:24.223Z,1443503844.223 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T05:17:24.224Z,1443503844.224 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T05:17:24.310Z,1443503844.310 [HorizontalControl] Loaded
2015-09-29T05:17:24.310Z,1443503844.310 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T05:17:24.311Z,1443503844.311 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T05:17:24.317Z,1443503844.317 [SpeedControl] Loaded
2015-09-29T05:17:24.318Z,1443503844.318 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T05:17:24.318Z,1443503844.318 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T05:17:24.319Z,1443503844.319 [LoopControl] Loaded
2015-09-29T05:17:24.319Z,1443503844.319 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T05:17:24.324Z,1443503844.324 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T05:17:24.325Z,1443503844.325 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T05:17:24.491Z,1443503844.491 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T05:17:24.508Z,1443503844.508 [SBIT] Loaded
2015-09-29T05:17:24.508Z,1443503844.508 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T05:17:24.509Z,1443503844.509 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T05:17:24.545Z,1443503844.545 [IBIT] Loaded
2015-09-29T05:17:24.545Z,1443503844.545 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T05:17:24.547Z,1443503844.547 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T05:17:24.712Z,1443503844.712 [CBIT] Loaded
2015-09-29T05:17:24.713Z,1443503844.713 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T05:17:24.713Z,1443503844.713 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T05:17:24.714Z,1443503844.714 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T05:17:24.755Z,1443503844.755 [DepthRateCalculator] Loaded
2015-09-29T05:17:24.756Z,1443503844.756 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T05:17:24.762Z,1443503844.762 [PitchRateCalculator] Loaded
2015-09-29T05:17:24.762Z,1443503844.762 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T05:17:24.774Z,1443503844.774 [SpeedCalculator] Loaded
2015-09-29T05:17:24.775Z,1443503844.775 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T05:17:24.797Z,1443503844.797 [TempGradientCalculator] Loaded
2015-09-29T05:17:24.797Z,1443503844.797 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T05:17:24.816Z,1443503844.816 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T05:17:24.816Z,1443503844.816 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T05:17:24.822Z,1443503844.822 [YawRateCalculator] Loaded
2015-09-29T05:17:24.822Z,1443503844.822 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T05:17:24.823Z,1443503844.823 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T05:17:24.828Z,1443503844.828 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T05:17:24.954Z,1443503844.954 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T05:17:24.954Z,1443503844.954 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T05:17:24.955Z,1443503844.955 [StratificationFrontDetector] Loaded
2015-09-29T05:17:24.955Z,1443503844.955 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T05:17:24.956Z,1443503844.956 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T05:17:24.956Z,1443503844.956 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T05:17:25.262Z,1443503845.262 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T05:17:25.263Z,1443503845.263 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T05:17:25.402Z,1443503845.402 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T05:17:25.403Z,1443503845.403 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T05:17:25.471Z,1443503845.471 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T05:17:25.471Z,1443503845.471 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T05:17:25.491Z,1443503845.491 [NavChart] Loaded
2015-09-29T05:17:25.491Z,1443503845.491 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T05:17:25.501Z,1443503845.501 [UniversalFixResidualReporter] Loaded
2015-09-29T05:17:25.501Z,1443503845.501 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T05:17:25.501Z,1443503845.501 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T05:17:25.502Z,1443503845.502 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T05:17:25.510Z,1443503845.510 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T05:17:25.511Z,1443503845.511 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T05:17:25.826Z,1443503845.826 [CTD_NeilBrown] Loaded
2015-09-29T05:17:25.827Z,1443503845.827 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T05:17:25.832Z,1443503845.832 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T05:17:25.832Z,1443503845.832 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T05:17:25.846Z,1443503845.846 [ISUS] Loaded
2015-09-29T05:17:25.846Z,1443503845.846 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T05:17:25.866Z,1443503845.866 [PAR_Licor] Loaded
2015-09-29T05:17:25.866Z,1443503845.866 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T05:17:25.926Z,1443503845.926 [WetLabsBB2FL] Loaded
2015-09-29T05:17:25.926Z,1443503845.926 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T05:17:25.928Z,1443503845.928 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T05:17:25.928Z,1443503845.928 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T05:17:25.929Z,1443503845.929 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T05:17:25.929Z,1443503845.929 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T05:17:26.667Z,1443503846.667 [AHRS_sp3003D] Loaded
2015-09-29T05:17:26.668Z,1443503846.668 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T05:17:26.864Z,1443503846.864 [DataOverHttps] Loaded
2015-09-29T05:17:26.864Z,1443503846.864 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T05:17:26.878Z,1443503846.878 [Depth_Keller] Loaded
2015-09-29T05:17:26.879Z,1443503846.879 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T05:17:26.884Z,1443503846.884 [DropWeight] Loaded
2015-09-29T05:17:26.884Z,1443503846.884 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T05:17:27.050Z,1443503847.050 [DVL_micro] Loaded
2015-09-29T05:17:27.050Z,1443503847.050 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T05:17:27.165Z,1443503847.165 [NAL9602] Loaded
2015-09-29T05:17:27.166Z,1443503847.166 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T05:17:27.216Z,1443503847.216 [Onboard] Loaded
2015-09-29T05:17:27.217Z,1443503847.217 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T05:17:27.233Z,1443503847.233 [Radio_Surface] Loaded
2015-09-29T05:17:27.234Z,1443503847.234 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T05:17:27.236Z,1443503847.236 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T05:17:27.236Z,1443503847.236 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T05:17:27.406Z,1443503847.406 [DAT] Loaded
2015-09-29T05:17:27.407Z,1443503847.407 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T05:17:27.414Z,1443503847.414 [SCPI] Loaded
2015-09-29T05:17:27.414Z,1443503847.414 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T05:17:27.415Z,1443503847.415 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T05:17:27.416Z,1443503847.416 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T05:17:27.555Z,1443503847.555 [BuoyancyServo] Loaded
2015-09-29T05:17:27.556Z,1443503847.556 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T05:17:27.569Z,1443503847.569 [ElevatorServo] Loaded
2015-09-29T05:17:27.570Z,1443503847.570 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T05:17:27.582Z,1443503847.582 [MassServo] Loaded
2015-09-29T05:17:27.583Z,1443503847.583 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T05:17:27.599Z,1443503847.599 [RudderServo] Loaded
2015-09-29T05:17:27.600Z,1443503847.600 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T05:17:27.612Z,1443503847.612 [ThrusterServo] Loaded
2015-09-29T05:17:27.612Z,1443503847.612 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T05:17:27.612Z,1443503847.612 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T05:17:27.613Z,1443503847.613 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T05:17:27.818Z,1443503847.818 [InternalSim] Loaded
2015-09-29T05:17:27.818Z,1443503847.818 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T05:17:27.819Z,1443503847.819 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T05:17:27.819Z,1443503847.819 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T05:17:27.867Z,1443503847.867 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T05:17:27.872Z,1443503847.872 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T05:17:27.873Z,1443503847.873 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T05:17:27.879Z,1443503847.879 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T05:17:27.884Z,1443503847.884 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T05:17:27.884Z,1443503847.884 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T05:17:27.889Z,1443503847.889 [Supervisor](INFO): Main Thread ID is 760
2015-09-29T05:17:27.889Z,1443503847.889 [Supervisor](DEBUG): Running supervisor.
2015-09-29T05:17:27.890Z,1443503847.890 [CommandLine ThreadHandler](INFO): Handler Thread ID is 814
2015-09-29T05:17:27.896Z,1443503847.896 [controlThread ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T05:17:27.897Z,1443503847.897 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T05:17:27.897Z,1443503847.897 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T05:17:27.899Z,1443503847.899 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T05:17:27.900Z,1443503847.900 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T05:17:27.901Z,1443503847.901 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T05:17:27.901Z,1443503847.901 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T05:17:27.902Z,1443503847.902 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T05:17:27.903Z,1443503847.903 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T05:17:27.903Z,1443503847.903 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T05:17:27.904Z,1443503847.904 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T05:17:27.905Z,1443503847.905 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T05:17:27.906Z,1443503847.906 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T05:17:27.906Z,1443503847.906 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T05:17:27.906Z,1443503847.906 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T05:17:27.906Z,1443503847.906 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T05:17:27.907Z,1443503847.907 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T05:17:27.907Z,1443503847.907 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T05:17:27.907Z,1443503847.907 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T05:17:27.908Z,1443503847.908 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T05:17:27.909Z,1443503847.909 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T05:17:27.909Z,1443503847.909 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T05:17:27.910Z,1443503847.910 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T05:17:27.910Z,1443503847.910 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T05:17:27.910Z,1443503847.910 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T05:17:27.911Z,1443503847.911 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T05:17:27.911Z,1443503847.911 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T05:17:27.912Z,1443503847.912 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T05:17:27.912Z,1443503847.912 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T05:17:27.917Z,1443503847.917 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T05:17:27.952Z,1443503847.952 [logger ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T05:17:28.045Z,1443503848.045 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T05:17:28.052Z,1443503848.052 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T05:17:28.098Z,1443503848.098 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T05:17:28.108Z,1443503848.108 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T05:17:28.124Z,1443503848.124 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T05:17:28.170Z,1443503848.170 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T05:17:28.172Z,1443503848.172 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T05:17:28.172Z,1443503848.172 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T05:17:28.172Z,1443503848.172 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T05:17:28.172Z,1443503848.172 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T05:17:28.173Z,1443503848.173 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T05:17:28.173Z,1443503848.173 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T05:17:28.173Z,1443503848.173 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T05:17:28.173Z,1443503848.173 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T05:17:28.201Z,1443503848.201 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T05:17:28.211Z,1443503848.211 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T05:17:28.212Z,1443503848.212 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T05:17:28.271Z,1443503848.271 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T05:17:28.272Z,1443503848.272 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T05:17:28.299Z,1443503848.299 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T05:17:28.326Z,1443503848.326 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T05:17:28.341Z,1443503848.341 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T05:17:28.360Z,1443503848.360 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T05:17:28.366Z,1443503848.366 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T05:17:28.612Z,1443503848.612 [DVL_micro](INFO): Initializing
2015-09-29T05:17:28.780Z,1443503848.780 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T05:17:28.796Z,1443503848.796 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T05:17:28.907Z,1443503848.907 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T05:17:28.938Z,1443503848.938 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T05:17:28.943Z,1443503848.943 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T05:17:28.969Z,1443503848.969 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T05:17:28.988Z,1443503848.988 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T05:17:29.253Z,1443503849.253 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T05:17:29.254Z,1443503849.254 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T05:17:38.288Z,1443503858.288 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:38.619Z,1443503858.619 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:38.751Z,1443503858.751 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:39.151Z,1443503859.151 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003300
2015-09-29T05:17:39.154Z,1443503859.154 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:39.549Z,1443503859.549 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:39.949Z,1443503859.949 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:40.349Z,1443503860.349 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:40.750Z,1443503860.750 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:41.149Z,1443503861.149 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:41.549Z,1443503861.549 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:41.948Z,1443503861.948 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:42.349Z,1443503862.349 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:42.749Z,1443503862.749 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:43.149Z,1443503863.149 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:43.548Z,1443503863.548 [NAL9602](INFO): No messages in MT queue
2015-09-29T05:17:43.549Z,1443503863.549 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:43.948Z,1443503863.948 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:44.348Z,1443503864.348 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:44.748Z,1443503864.748 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:45.148Z,1443503865.148 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:45.549Z,1443503865.549 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:45.948Z,1443503865.948 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:46.348Z,1443503866.348 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:46.748Z,1443503866.748 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:47.148Z,1443503867.148 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:47.548Z,1443503867.548 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:47.949Z,1443503867.949 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:48.348Z,1443503868.348 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:48.366Z,1443503868.366 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T05:17:48.748Z,1443503868.748 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:49.149Z,1443503869.149 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:49.549Z,1443503869.549 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:49.949Z,1443503869.949 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:50.349Z,1443503870.349 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:50.749Z,1443503870.749 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:51.153Z,1443503871.153 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:51.548Z,1443503871.548 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:51.949Z,1443503871.949 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:52.350Z,1443503872.350 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:17:52.748Z,1443503872.748 [D