2015-09-29T05:09:25.302Z,1443503365.302 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T05:09:25.308Z,1443503365.308 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T05:09:25.309Z,1443503365.309 [SyncHandler](INFO): Protected caller Thread ID is 761
2015-09-29T05:09:25.309Z,1443503365.309 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T05:09:25.312Z,1443503365.312 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T05:09:25.312Z,1443503365.312 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T05:09:25.315Z,1443503365.315 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T05:09:25.328Z,1443503365.328 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T05:09:25.332Z,1443503365.332 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T05:09:25.332Z,1443503365.332 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T05:09:25.333Z,1443503365.333 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T05:09:25.336Z,1443503365.336 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T05:09:25.336Z,1443503365.336 [logger ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T05:09:25.339Z,1443503365.339 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T05:09:25.339Z,1443503365.339 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T05:09:25.343Z,1443503365.343 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T05:09:25.734Z,1443503365.734 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T05:09:25.736Z,1443503365.736 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T05:09:25.925Z,1443503365.925 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T05:09:25.927Z,1443503365.927 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T05:09:26.073Z,1443503366.073 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T05:09:26.073Z,1443503366.073 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T05:09:26.221Z,1443503366.221 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T05:09:26.222Z,1443503366.222 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T05:09:26.315Z,1443503366.315 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T05:09:26.519Z,1443503366.519 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T05:09:26.520Z,1443503366.520 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T05:09:26.615Z,1443503366.615 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T05:09:26.616Z,1443503366.616 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T05:09:26.929Z,1443503366.929 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T05:09:26.930Z,1443503366.930 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T05:09:27.327Z,1443503367.327 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T05:09:27.328Z,1443503367.328 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T05:09:27.681Z,1443503367.681 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T05:09:27.683Z,1443503367.683 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T05:09:28.278Z,1443503368.278 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T05:09:28.279Z,1443503368.279 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T05:09:28.509Z,1443503368.509 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T05:09:28.510Z,1443503368.510 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T05:09:28.625Z,1443503368.625 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T05:09:28.625Z,1443503368.625 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T05:09:29.142Z,1443503369.142 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T05:09:29.143Z,1443503369.143 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T05:09:29.320Z,1443503369.320 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T05:09:29.322Z,1443503369.322 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T05:09:29.322Z,1443503369.322 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T05:09:29.327Z,1443503369.327 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T05:09:29.401Z,1443503369.401 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T05:09:29.537Z,1443503369.537 [VerticalControl] Loaded
2015-09-29T05:09:29.538Z,1443503369.538 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T05:09:29.538Z,1443503369.538 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T05:09:29.621Z,1443503369.621 [HorizontalControl] Loaded
2015-09-29T05:09:29.621Z,1443503369.621 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T05:09:29.622Z,1443503369.622 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T05:09:29.628Z,1443503369.628 [SpeedControl] Loaded
2015-09-29T05:09:29.632Z,1443503369.632 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T05:09:29.633Z,1443503369.633 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T05:09:29.633Z,1443503369.633 [LoopControl] Loaded
2015-09-29T05:09:29.634Z,1443503369.634 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T05:09:29.634Z,1443503369.634 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T05:09:29.635Z,1443503369.635 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T05:09:29.796Z,1443503369.796 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T05:09:29.812Z,1443503369.812 [SBIT] Loaded
2015-09-29T05:09:29.812Z,1443503369.812 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T05:09:29.813Z,1443503369.813 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T05:09:29.843Z,1443503369.843 [IBIT] Loaded
2015-09-29T05:09:29.844Z,1443503369.844 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T05:09:29.846Z,1443503369.846 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T05:09:30.002Z,1443503370.002 [CBIT] Loaded
2015-09-29T05:09:30.003Z,1443503370.003 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T05:09:30.003Z,1443503370.003 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T05:09:30.004Z,1443503370.004 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T05:09:30.046Z,1443503370.046 [DepthRateCalculator] Loaded
2015-09-29T05:09:30.046Z,1443503370.046 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T05:09:30.051Z,1443503370.051 [PitchRateCalculator] Loaded
2015-09-29T05:09:30.052Z,1443503370.052 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T05:09:30.063Z,1443503370.063 [SpeedCalculator] Loaded
2015-09-29T05:09:30.064Z,1443503370.064 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T05:09:30.081Z,1443503370.081 [TempGradientCalculator] Loaded
2015-09-29T05:09:30.081Z,1443503370.081 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T05:09:30.103Z,1443503370.103 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T05:09:30.103Z,1443503370.103 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T05:09:30.113Z,1443503370.113 [YawRateCalculator] Loaded
2015-09-29T05:09:30.113Z,1443503370.113 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T05:09:30.114Z,1443503370.114 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T05:09:30.114Z,1443503370.114 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T05:09:30.234Z,1443503370.234 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T05:09:30.234Z,1443503370.234 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T05:09:30.235Z,1443503370.235 [StratificationFrontDetector] Loaded
2015-09-29T05:09:30.235Z,1443503370.235 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T05:09:30.235Z,1443503370.235 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T05:09:30.240Z,1443503370.240 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T05:09:30.536Z,1443503370.536 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T05:09:30.537Z,1443503370.537 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T05:09:30.667Z,1443503370.667 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T05:09:30.667Z,1443503370.667 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T05:09:30.733Z,1443503370.733 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T05:09:30.733Z,1443503370.733 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T05:09:30.751Z,1443503370.751 [NavChart] Loaded
2015-09-29T05:09:30.751Z,1443503370.751 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T05:09:30.757Z,1443503370.757 [UniversalFixResidualReporter] Loaded
2015-09-29T05:09:30.757Z,1443503370.757 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T05:09:30.757Z,1443503370.757 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T05:09:30.758Z,1443503370.758 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T05:09:30.766Z,1443503370.766 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T05:09:30.767Z,1443503370.767 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T05:09:31.070Z,1443503371.070 [CTD_NeilBrown] Loaded
2015-09-29T05:09:31.070Z,1443503371.070 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T05:09:31.072Z,1443503371.072 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T05:09:31.072Z,1443503371.072 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T05:09:31.085Z,1443503371.085 [ISUS] Loaded
2015-09-29T05:09:31.086Z,1443503371.086 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T05:09:31.105Z,1443503371.105 [PAR_Licor] Loaded
2015-09-29T05:09:31.105Z,1443503371.105 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T05:09:31.162Z,1443503371.162 [WetLabsBB2FL] Loaded
2015-09-29T05:09:31.162Z,1443503371.162 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T05:09:31.164Z,1443503371.164 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T05:09:31.164Z,1443503371.164 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T05:09:31.165Z,1443503371.165 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T05:09:31.166Z,1443503371.166 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T05:09:31.905Z,1443503371.905 [AHRS_sp3003D] Loaded
2015-09-29T05:09:31.905Z,1443503371.905 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T05:09:32.075Z,1443503372.075 [DataOverHttps] Loaded
2015-09-29T05:09:32.075Z,1443503372.075 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T05:09:32.089Z,1443503372.089 [Depth_Keller] Loaded
2015-09-29T05:09:32.089Z,1443503372.089 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T05:09:32.094Z,1443503372.094 [DropWeight] Loaded
2015-09-29T05:09:32.095Z,1443503372.095 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T05:09:32.235Z,1443503372.235 [DVL_micro] Loaded
2015-09-29T05:09:32.235Z,1443503372.235 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T05:09:32.332Z,1443503372.332 [NAL9602] Loaded
2015-09-29T05:09:32.332Z,1443503372.332 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T05:09:32.375Z,1443503372.375 [Onboard] Loaded
2015-09-29T05:09:32.376Z,1443503372.376 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T05:09:32.387Z,1443503372.387 [Radio_Surface] Loaded
2015-09-29T05:09:32.388Z,1443503372.388 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T05:09:32.389Z,1443503372.389 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T05:09:32.389Z,1443503372.389 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T05:09:32.534Z,1443503372.534 [DAT] Loaded
2015-09-29T05:09:32.535Z,1443503372.535 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T05:09:32.541Z,1443503372.541 [SCPI] Loaded
2015-09-29T05:09:32.542Z,1443503372.542 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T05:09:32.542Z,1443503372.542 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T05:09:32.543Z,1443503372.543 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T05:09:32.665Z,1443503372.665 [BuoyancyServo] Loaded
2015-09-29T05:09:32.666Z,1443503372.666 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T05:09:32.679Z,1443503372.679 [ElevatorServo] Loaded
2015-09-29T05:09:32.679Z,1443503372.679 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T05:09:32.691Z,1443503372.691 [MassServo] Loaded
2015-09-29T05:09:32.691Z,1443503372.691 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T05:09:32.703Z,1443503372.703 [RudderServo] Loaded
2015-09-29T05:09:32.704Z,1443503372.704 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T05:09:32.715Z,1443503372.715 [ThrusterServo] Loaded
2015-09-29T05:09:32.716Z,1443503372.716 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T05:09:32.716Z,1443503372.716 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T05:09:32.717Z,1443503372.717 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T05:09:32.900Z,1443503372.900 [InternalSim] Loaded
2015-09-29T05:09:32.900Z,1443503372.900 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T05:09:32.900Z,1443503372.900 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T05:09:32.901Z,1443503372.901 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T05:09:32.940Z,1443503372.940 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T05:09:32.945Z,1443503372.945 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T05:09:32.946Z,1443503372.946 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T05:09:32.952Z,1443503372.952 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T05:09:32.953Z,1443503372.953 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T05:09:32.954Z,1443503372.954 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T05:09:32.959Z,1443503372.959 [Supervisor](INFO): Main Thread ID is 760
2015-09-29T05:09:32.959Z,1443503372.959 [Supervisor](DEBUG): Running supervisor.
2015-09-29T05:09:32.959Z,1443503372.959 [CommandLine ThreadHandler](INFO): Handler Thread ID is 814
2015-09-29T05:09:32.962Z,1443503372.962 [controlThread ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T05:09:32.963Z,1443503372.963 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T05:09:32.963Z,1443503372.963 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T05:09:32.965Z,1443503372.965 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T05:09:32.966Z,1443503372.966 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T05:09:32.967Z,1443503372.967 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T05:09:32.967Z,1443503372.967 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T05:09:32.968Z,1443503372.968 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T05:09:32.969Z,1443503372.969 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T05:09:32.969Z,1443503372.969 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T05:09:32.970Z,1443503372.970 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T05:09:32.971Z,1443503372.971 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T05:09:32.972Z,1443503372.972 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T05:09:32.972Z,1443503372.972 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T05:09:32.972Z,1443503372.972 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T05:09:32.972Z,1443503372.972 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T05:09:32.973Z,1443503372.973 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T05:09:32.973Z,1443503372.973 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T05:09:32.973Z,1443503372.973 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T05:09:32.974Z,1443503372.974 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T05:09:32.975Z,1443503372.975 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T05:09:32.975Z,1443503372.975 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T05:09:32.976Z,1443503372.976 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T05:09:32.976Z,1443503372.976 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T05:09:32.977Z,1443503372.977 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T05:09:32.977Z,1443503372.977 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T05:09:32.977Z,1443503372.977 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T05:09:32.978Z,1443503372.978 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T05:09:32.978Z,1443503372.978 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T05:09:32.983Z,1443503372.983 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T05:09:33.001Z,1443503373.001 [logger ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T05:09:33.041Z,1443503373.041 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T05:09:33.055Z,1443503373.055 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T05:09:33.143Z,1443503373.143 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T05:09:33.183Z,1443503373.183 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T05:09:33.194Z,1443503373.194 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T05:09:33.196Z,1443503373.196 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T05:09:33.197Z,1443503373.197 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T05:09:33.197Z,1443503373.197 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T05:09:33.197Z,1443503373.197 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T05:09:33.197Z,1443503373.197 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T05:09:33.198Z,1443503373.198 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T05:09:33.198Z,1443503373.198 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T05:09:33.198Z,1443503373.198 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T05:09:33.208Z,1443503373.208 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T05:09:33.237Z,1443503373.237 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T05:09:33.269Z,1443503373.269 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T05:09:33.270Z,1443503373.270 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T05:09:33.325Z,1443503373.325 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T05:09:33.326Z,1443503373.326 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T05:09:33.370Z,1443503373.370 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T05:09:33.373Z,1443503373.373 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T05:09:33.399Z,1443503373.399 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T05:09:33.402Z,1443503373.402 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T05:09:33.408Z,1443503373.408 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T05:09:33.602Z,1443503373.602 [DVL_micro](INFO): Initializing
2015-09-29T05:09:33.778Z,1443503373.778 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T05:09:33.802Z,1443503373.802 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T05:09:33.901Z,1443503373.901 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T05:09:33.920Z,1443503373.920 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T05:09:33.926Z,1443503373.926 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T05:09:33.937Z,1443503373.937 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T05:09:33.955Z,1443503373.955 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T05:09:34.190Z,1443503374.190 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T05:09:34.191Z,1443503374.191 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T05:09:43.029Z,1443503383.029 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:43.351Z,1443503383.351 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:43.499Z,1443503383.499 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:43.900Z,1443503383.900 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003500
2015-09-29T05:09:43.904Z,1443503383.904 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:44.297Z,1443503384.297 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:44.697Z,1443503384.697 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:45.098Z,1443503385.098 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:45.497Z,1443503385.497 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:45.897Z,1443503385.897 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:46.298Z,1443503386.298 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:46.697Z,1443503386.697 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:47.097Z,1443503387.097 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:47.497Z,1443503387.497 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:47.897Z,1443503387.897 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:48.296Z,1443503388.296 [NAL9602](INFO): No messages in MT queue
2015-09-29T05:09:48.297Z,1443503388.297 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:48.697Z,1443503388.697 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:49.097Z,1443503389.097 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:49.496Z,1443503389.496 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:49.897Z,1443503389.897 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:50.297Z,1443503390.297 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:50.697Z,1443503390.697 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:51.096Z,1443503391.096 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:51.497Z,1443503391.497 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:51.896Z,1443503391.896 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:52.297Z,1443503392.297 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:52.697Z,1443503392.697 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:53.098Z,1443503393.098 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:53.497Z,1443503393.497 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:53.513Z,1443503393.513 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T05:09:53.896Z,1443503393.896 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:54.297Z,1443503394.297 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:54.697Z,1443503394.697 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:55.097Z,1443503395.097 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:55.498Z,1443503395.498 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:55.897Z,1443503395.897 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:56.297Z,1443503396.297 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:56.697Z,1443503396.697 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:57.097Z,1443503397.097 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T05:09:57.497Z,1443503397.497 [D