2015-09-29T04:53:39.237Z,1443502419.237 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T04:53:39.241Z,1443502419.241 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T04:53:39.242Z,1443502419.242 [SyncHandler](INFO): Protected caller Thread ID is 761
2015-09-29T04:53:39.242Z,1443502419.242 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T04:53:39.245Z,1443502419.245 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T04:53:39.246Z,1443502419.246 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T04:53:39.248Z,1443502419.248 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T04:53:39.260Z,1443502419.260 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T04:53:39.265Z,1443502419.265 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T04:53:39.266Z,1443502419.266 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T04:53:39.266Z,1443502419.266 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T04:53:39.269Z,1443502419.269 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T04:53:39.270Z,1443502419.270 [logger ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T04:53:39.272Z,1443502419.272 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T04:53:39.272Z,1443502419.272 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T04:53:39.276Z,1443502419.276 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T04:53:39.667Z,1443502419.667 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T04:53:39.668Z,1443502419.668 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T04:53:39.861Z,1443502419.861 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T04:53:39.863Z,1443502419.863 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T04:53:40.006Z,1443502420.006 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T04:53:40.007Z,1443502420.007 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T04:53:40.154Z,1443502420.154 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T04:53:40.155Z,1443502420.155 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T04:53:40.253Z,1443502420.253 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T04:53:40.472Z,1443502420.472 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T04:53:40.473Z,1443502420.473 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T04:53:40.568Z,1443502420.568 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T04:53:40.569Z,1443502420.569 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T04:53:40.882Z,1443502420.882 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T04:53:40.883Z,1443502420.883 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T04:53:41.282Z,1443502421.282 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T04:53:41.283Z,1443502421.283 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T04:53:41.634Z,1443502421.634 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T04:53:41.636Z,1443502421.636 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T04:53:42.231Z,1443502422.231 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T04:53:42.231Z,1443502422.231 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T04:53:42.458Z,1443502422.458 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T04:53:42.459Z,1443502422.459 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T04:53:42.578Z,1443502422.578 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T04:53:42.579Z,1443502422.579 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T04:53:43.094Z,1443502423.094 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T04:53:43.095Z,1443502423.095 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T04:53:43.253Z,1443502423.253 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T04:53:43.255Z,1443502423.255 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T04:53:43.255Z,1443502423.255 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T04:53:43.259Z,1443502423.259 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T04:53:43.333Z,1443502423.333 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T04:53:43.467Z,1443502423.467 [VerticalControl] Loaded
2015-09-29T04:53:43.467Z,1443502423.467 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T04:53:43.468Z,1443502423.468 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T04:53:43.549Z,1443502423.549 [HorizontalControl] Loaded
2015-09-29T04:53:43.549Z,1443502423.549 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T04:53:43.550Z,1443502423.550 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T04:53:43.555Z,1443502423.555 [SpeedControl] Loaded
2015-09-29T04:53:43.556Z,1443502423.556 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T04:53:43.556Z,1443502423.556 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T04:53:43.557Z,1443502423.557 [LoopControl] Loaded
2015-09-29T04:53:43.557Z,1443502423.557 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T04:53:43.558Z,1443502423.558 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T04:53:43.558Z,1443502423.558 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T04:53:43.721Z,1443502423.721 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T04:53:43.733Z,1443502423.733 [SBIT] Loaded
2015-09-29T04:53:43.734Z,1443502423.734 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T04:53:43.734Z,1443502423.734 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T04:53:43.768Z,1443502423.768 [IBIT] Loaded
2015-09-29T04:53:43.769Z,1443502423.769 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T04:53:43.771Z,1443502423.771 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T04:53:43.925Z,1443502423.925 [CBIT] Loaded
2015-09-29T04:53:43.925Z,1443502423.925 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T04:53:43.926Z,1443502423.926 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T04:53:43.926Z,1443502423.926 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T04:53:43.970Z,1443502423.970 [DepthRateCalculator] Loaded
2015-09-29T04:53:43.971Z,1443502423.971 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T04:53:43.976Z,1443502423.976 [PitchRateCalculator] Loaded
2015-09-29T04:53:43.976Z,1443502423.976 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T04:53:43.988Z,1443502423.988 [SpeedCalculator] Loaded
2015-09-29T04:53:43.988Z,1443502423.988 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T04:53:44.005Z,1443502424.005 [TempGradientCalculator] Loaded
2015-09-29T04:53:44.006Z,1443502424.006 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T04:53:44.027Z,1443502424.027 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T04:53:44.027Z,1443502424.027 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T04:53:44.032Z,1443502424.032 [YawRateCalculator] Loaded
2015-09-29T04:53:44.033Z,1443502424.033 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T04:53:44.037Z,1443502424.037 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T04:53:44.038Z,1443502424.038 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T04:53:44.161Z,1443502424.161 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T04:53:44.161Z,1443502424.161 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T04:53:44.162Z,1443502424.162 [StratificationFrontDetector] Loaded
2015-09-29T04:53:44.162Z,1443502424.162 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T04:53:44.162Z,1443502424.162 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T04:53:44.163Z,1443502424.163 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T04:53:44.457Z,1443502424.457 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T04:53:44.457Z,1443502424.457 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T04:53:44.586Z,1443502424.586 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T04:53:44.586Z,1443502424.586 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T04:53:44.651Z,1443502424.651 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T04:53:44.651Z,1443502424.651 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T04:53:44.668Z,1443502424.668 [NavChart] Loaded
2015-09-29T04:53:44.669Z,1443502424.669 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T04:53:44.674Z,1443502424.674 [UniversalFixResidualReporter] Loaded
2015-09-29T04:53:44.674Z,1443502424.674 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T04:53:44.675Z,1443502424.675 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T04:53:44.675Z,1443502424.675 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T04:53:44.684Z,1443502424.684 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T04:53:44.684Z,1443502424.684 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T04:53:44.986Z,1443502424.986 [CTD_NeilBrown] Loaded
2015-09-29T04:53:44.986Z,1443502424.986 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T04:53:44.989Z,1443502424.989 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T04:53:44.990Z,1443502424.990 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T04:53:45.002Z,1443502425.002 [ISUS] Loaded
2015-09-29T04:53:45.003Z,1443502425.003 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T04:53:45.017Z,1443502425.017 [PAR_Licor] Loaded
2015-09-29T04:53:45.018Z,1443502425.018 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T04:53:45.073Z,1443502425.073 [WetLabsBB2FL] Loaded
2015-09-29T04:53:45.077Z,1443502425.077 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T04:53:45.081Z,1443502425.081 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T04:53:45.082Z,1443502425.082 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T04:53:45.082Z,1443502425.082 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T04:53:45.083Z,1443502425.083 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T04:53:45.808Z,1443502425.808 [AHRS_sp3003D] Loaded
2015-09-29T04:53:45.808Z,1443502425.808 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T04:53:46.003Z,1443502426.003 [DataOverHttps] Loaded
2015-09-29T04:53:46.003Z,1443502426.003 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T04:53:46.016Z,1443502426.016 [Depth_Keller] Loaded
2015-09-29T04:53:46.017Z,1443502426.017 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T04:53:46.026Z,1443502426.026 [DropWeight] Loaded
2015-09-29T04:53:46.026Z,1443502426.026 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T04:53:46.178Z,1443502426.178 [DVL_micro] Loaded
2015-09-29T04:53:46.178Z,1443502426.178 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T04:53:46.285Z,1443502426.285 [NAL9602] Loaded
2015-09-29T04:53:46.286Z,1443502426.286 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T04:53:46.333Z,1443502426.333 [Onboard] Loaded
2015-09-29T04:53:46.333Z,1443502426.333 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T04:53:46.345Z,1443502426.345 [Radio_Surface] Loaded
2015-09-29T04:53:46.345Z,1443502426.345 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T04:53:46.349Z,1443502426.349 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T04:53:46.350Z,1443502426.350 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T04:53:46.508Z,1443502426.508 [DAT] Loaded
2015-09-29T04:53:46.508Z,1443502426.508 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T04:53:46.515Z,1443502426.515 [SCPI] Loaded
2015-09-29T04:53:46.515Z,1443502426.515 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T04:53:46.516Z,1443502426.516 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T04:53:46.517Z,1443502426.517 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T04:53:46.648Z,1443502426.648 [BuoyancyServo] Loaded
2015-09-29T04:53:46.648Z,1443502426.648 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T04:53:46.665Z,1443502426.665 [ElevatorServo] Loaded
2015-09-29T04:53:46.665Z,1443502426.665 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T04:53:46.677Z,1443502426.677 [MassServo] Loaded
2015-09-29T04:53:46.677Z,1443502426.677 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T04:53:46.689Z,1443502426.689 [RudderServo] Loaded
2015-09-29T04:53:46.689Z,1443502426.689 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T04:53:46.705Z,1443502426.705 [ThrusterServo] Loaded
2015-09-29T04:53:46.705Z,1443502426.705 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T04:53:46.706Z,1443502426.706 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T04:53:46.706Z,1443502426.706 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T04:53:46.906Z,1443502426.906 [InternalSim] Loaded
2015-09-29T04:53:46.906Z,1443502426.906 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T04:53:46.907Z,1443502426.907 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T04:53:46.907Z,1443502426.907 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T04:53:46.950Z,1443502426.950 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T04:53:46.955Z,1443502426.955 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T04:53:46.955Z,1443502426.955 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T04:53:46.962Z,1443502426.962 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T04:53:46.965Z,1443502426.965 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T04:53:46.966Z,1443502426.966 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T04:53:46.970Z,1443502426.970 [Supervisor](INFO): Main Thread ID is 760
2015-09-29T04:53:46.971Z,1443502426.971 [Supervisor](DEBUG): Running supervisor.
2015-09-29T04:53:46.971Z,1443502426.971 [CommandLine ThreadHandler](INFO): Handler Thread ID is 814
2015-09-29T04:53:46.978Z,1443502426.978 [controlThread ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T04:53:46.978Z,1443502426.978 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T04:53:46.979Z,1443502426.979 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T04:53:46.981Z,1443502426.981 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T04:53:46.982Z,1443502426.982 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T04:53:46.982Z,1443502426.982 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T04:53:46.983Z,1443502426.983 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T04:53:46.983Z,1443502426.983 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T04:53:46.984Z,1443502426.984 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T04:53:46.985Z,1443502426.985 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T04:53:46.986Z,1443502426.986 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T04:53:46.986Z,1443502426.986 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T04:53:46.987Z,1443502426.987 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T04:53:46.987Z,1443502426.987 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T04:53:46.988Z,1443502426.988 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T04:53:46.988Z,1443502426.988 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T04:53:46.988Z,1443502426.988 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T04:53:46.988Z,1443502426.988 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T04:53:46.989Z,1443502426.989 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T04:53:46.989Z,1443502426.989 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T04:53:46.990Z,1443502426.990 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T04:53:46.991Z,1443502426.991 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T04:53:46.991Z,1443502426.991 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T04:53:46.992Z,1443502426.992 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T04:53:46.992Z,1443502426.992 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T04:53:46.992Z,1443502426.992 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T04:53:46.993Z,1443502426.993 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T04:53:46.993Z,1443502426.993 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T04:53:46.994Z,1443502426.994 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T04:53:46.998Z,1443502426.998 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T04:53:47.034Z,1443502427.034 [logger ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T04:53:47.130Z,1443502427.130 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T04:53:47.131Z,1443502427.131 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T04:53:47.200Z,1443502427.200 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T04:53:47.215Z,1443502427.215 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T04:53:47.243Z,1443502427.243 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T04:53:47.252Z,1443502427.252 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T04:53:47.267Z,1443502427.267 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T04:53:47.269Z,1443502427.269 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T04:53:47.269Z,1443502427.269 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T04:53:47.269Z,1443502427.269 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T04:53:47.270Z,1443502427.270 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T04:53:47.270Z,1443502427.270 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T04:53:47.270Z,1443502427.270 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T04:53:47.270Z,1443502427.270 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T04:53:47.271Z,1443502427.271 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T04:53:47.314Z,1443502427.314 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T04:53:47.315Z,1443502427.315 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T04:53:47.414Z,1443502427.414 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T04:53:47.415Z,1443502427.415 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T04:53:47.437Z,1443502427.437 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T04:53:47.464Z,1443502427.464 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T04:53:47.486Z,1443502427.486 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T04:53:47.489Z,1443502427.489 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T04:53:47.501Z,1443502427.501 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T04:53:47.697Z,1443502427.697 [DVL_micro](INFO): Initializing
2015-09-29T04:53:47.853Z,1443502427.853 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T04:53:47.861Z,1443502427.861 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T04:53:47.986Z,1443502427.986 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T04:53:47.997Z,1443502427.997 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T04:53:48.009Z,1443502428.009 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T04:53:48.018Z,1443502428.018 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T04:53:48.037Z,1443502428.037 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T04:53:48.299Z,1443502428.299 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T04:53:48.300Z,1443502428.300 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T04:53:57.335Z,1443502437.335 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:53:57.672Z,1443502437.672 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:53:57.808Z,1443502437.808 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:53:58.208Z,1443502438.208 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003000
2015-09-29T04:53:58.212Z,1443502438.212 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:53:58.606Z,1443502438.606 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:53:59.006Z,1443502439.006 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:53:59.407Z,1443502439.407 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:53:59.807Z,1443502439.807 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:54:00.207Z,1443502440.207 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:54:00.607Z,1443502440.607 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:54:01.005Z,1443502441.005 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:54:01.407Z,1443502441.407 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:54:01.806Z,1443502441.806 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:54:02.206Z,1443502442.206 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:54:02.605Z,1443502442.605 [NAL9602](INFO): No messages in MT queue
2015-09-29T04:54:02.606Z,1443502442.606 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:54:03.007Z,1443502443.007 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:54:03.406Z,1443502443.406 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:54:03.806Z,1443502443.806 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:54:04.206Z,1443502444.206 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:54:04.606Z,1443502444.606 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:54:05.005Z,1443502445.005 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:54:05.407Z,1443502445.407 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:54:05.806Z,1443502445.806 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:54:06.206Z,1443502446.206 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:54:06.606Z,1443502446.606 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:54:07.006Z,1443502447.006 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:54:07.406Z,1443502447.406 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:54:07.420Z,1443502447.420 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T04:54:07.806Z,1443502447.806 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:54:08.206Z,1443502448.206 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:54:08.606Z,1443502448.606 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:54:09.006Z,1443502449.006 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:54:09.406Z,1443502449.406 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:54:09.807Z,1443502449.807 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:54:10.206Z,1443502450.206 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:54:10.606Z,1443502450.606 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:54:11.006Z,1443502451.006 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:54:11.406Z,1443502451.406 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:54:11.806Z,1443502451.806 [D