2015-09-29T04:45:42.928Z,1443501942.928 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T04:45:42.931Z,1443501942.931 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T04:45:42.932Z,1443501942.932 [SyncHandler](INFO): Protected caller Thread ID is 761
2015-09-29T04:45:42.932Z,1443501942.932 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T04:45:42.934Z,1443501942.934 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T04:45:42.935Z,1443501942.935 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T04:45:42.938Z,1443501942.938 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T04:45:42.950Z,1443501942.950 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T04:45:42.954Z,1443501942.954 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T04:45:42.955Z,1443501942.955 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T04:45:42.956Z,1443501942.956 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T04:45:42.958Z,1443501942.958 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T04:45:42.959Z,1443501942.959 [logger ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T04:45:42.961Z,1443501942.961 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T04:45:42.961Z,1443501942.961 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T04:45:42.965Z,1443501942.965 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T04:45:43.369Z,1443501943.369 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T04:45:43.371Z,1443501943.371 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T04:45:43.566Z,1443501943.566 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T04:45:43.568Z,1443501943.568 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T04:45:43.715Z,1443501943.715 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T04:45:43.716Z,1443501943.716 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T04:45:43.867Z,1443501943.867 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T04:45:43.868Z,1443501943.868 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T04:45:43.964Z,1443501943.964 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T04:45:44.187Z,1443501944.187 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T04:45:44.188Z,1443501944.188 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T04:45:44.283Z,1443501944.283 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T04:45:44.284Z,1443501944.284 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T04:45:44.604Z,1443501944.604 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T04:45:44.604Z,1443501944.604 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T04:45:45.012Z,1443501945.012 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T04:45:45.012Z,1443501945.012 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T04:45:45.371Z,1443501945.371 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T04:45:45.373Z,1443501945.373 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T04:45:45.984Z,1443501945.984 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T04:45:45.985Z,1443501945.985 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T04:45:46.220Z,1443501946.220 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T04:45:46.220Z,1443501946.220 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T04:45:46.331Z,1443501946.331 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T04:45:46.332Z,1443501946.332 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T04:45:46.854Z,1443501946.854 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T04:45:46.855Z,1443501946.855 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T04:45:47.035Z,1443501947.035 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T04:45:47.037Z,1443501947.037 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T04:45:47.037Z,1443501947.037 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T04:45:47.042Z,1443501947.042 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T04:45:47.116Z,1443501947.116 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T04:45:47.249Z,1443501947.249 [VerticalControl] Loaded
2015-09-29T04:45:47.249Z,1443501947.249 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T04:45:47.250Z,1443501947.250 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T04:45:47.331Z,1443501947.331 [HorizontalControl] Loaded
2015-09-29T04:45:47.331Z,1443501947.331 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T04:45:47.331Z,1443501947.331 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T04:45:47.337Z,1443501947.337 [SpeedControl] Loaded
2015-09-29T04:45:47.338Z,1443501947.338 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T04:45:47.338Z,1443501947.338 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T04:45:47.339Z,1443501947.339 [LoopControl] Loaded
2015-09-29T04:45:47.339Z,1443501947.339 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T04:45:47.340Z,1443501947.340 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T04:45:47.340Z,1443501947.340 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T04:45:47.498Z,1443501947.498 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T04:45:47.510Z,1443501947.510 [SBIT] Loaded
2015-09-29T04:45:47.510Z,1443501947.510 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T04:45:47.511Z,1443501947.511 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T04:45:47.545Z,1443501947.545 [IBIT] Loaded
2015-09-29T04:45:47.545Z,1443501947.545 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T04:45:47.547Z,1443501947.547 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T04:45:47.701Z,1443501947.701 [CBIT] Loaded
2015-09-29T04:45:47.702Z,1443501947.702 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T04:45:47.702Z,1443501947.702 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T04:45:47.703Z,1443501947.703 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T04:45:47.744Z,1443501947.744 [DepthRateCalculator] Loaded
2015-09-29T04:45:47.744Z,1443501947.744 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T04:45:47.750Z,1443501947.750 [PitchRateCalculator] Loaded
2015-09-29T04:45:47.750Z,1443501947.750 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T04:45:47.761Z,1443501947.761 [SpeedCalculator] Loaded
2015-09-29T04:45:47.762Z,1443501947.762 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T04:45:47.783Z,1443501947.783 [TempGradientCalculator] Loaded
2015-09-29T04:45:47.783Z,1443501947.783 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T04:45:47.800Z,1443501947.800 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T04:45:47.801Z,1443501947.801 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T04:45:47.806Z,1443501947.806 [YawRateCalculator] Loaded
2015-09-29T04:45:47.806Z,1443501947.806 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T04:45:47.807Z,1443501947.807 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T04:45:47.807Z,1443501947.807 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T04:45:47.931Z,1443501947.931 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T04:45:47.931Z,1443501947.931 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T04:45:47.932Z,1443501947.932 [StratificationFrontDetector] Loaded
2015-09-29T04:45:47.932Z,1443501947.932 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T04:45:47.932Z,1443501947.932 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T04:45:47.933Z,1443501947.933 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T04:45:48.221Z,1443501948.221 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T04:45:48.222Z,1443501948.222 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T04:45:48.353Z,1443501948.353 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T04:45:48.354Z,1443501948.354 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T04:45:48.419Z,1443501948.419 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T04:45:48.419Z,1443501948.419 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T04:45:48.437Z,1443501948.437 [NavChart] Loaded
2015-09-29T04:45:48.437Z,1443501948.437 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T04:45:48.447Z,1443501948.447 [UniversalFixResidualReporter] Loaded
2015-09-29T04:45:48.447Z,1443501948.447 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T04:45:48.447Z,1443501948.447 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T04:45:48.448Z,1443501948.448 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T04:45:48.457Z,1443501948.457 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T04:45:48.457Z,1443501948.457 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T04:45:48.759Z,1443501948.759 [CTD_NeilBrown] Loaded
2015-09-29T04:45:48.760Z,1443501948.760 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T04:45:48.762Z,1443501948.762 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T04:45:48.763Z,1443501948.763 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T04:45:48.776Z,1443501948.776 [ISUS] Loaded
2015-09-29T04:45:48.776Z,1443501948.776 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T04:45:48.795Z,1443501948.795 [PAR_Licor] Loaded
2015-09-29T04:45:48.795Z,1443501948.795 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T04:45:48.850Z,1443501948.850 [WetLabsBB2FL] Loaded
2015-09-29T04:45:48.851Z,1443501948.851 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T04:45:48.854Z,1443501948.854 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T04:45:48.855Z,1443501948.855 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T04:45:48.855Z,1443501948.855 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T04:45:48.856Z,1443501948.856 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T04:45:49.572Z,1443501949.572 [AHRS_sp3003D] Loaded
2015-09-29T04:45:49.573Z,1443501949.573 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T04:45:49.772Z,1443501949.772 [DataOverHttps] Loaded
2015-09-29T04:45:49.772Z,1443501949.772 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T04:45:49.790Z,1443501949.790 [Depth_Keller] Loaded
2015-09-29T04:45:49.790Z,1443501949.790 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T04:45:49.795Z,1443501949.795 [DropWeight] Loaded
2015-09-29T04:45:49.796Z,1443501949.796 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T04:45:49.939Z,1443501949.939 [DVL_micro] Loaded
2015-09-29T04:45:49.940Z,1443501949.940 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T04:45:50.035Z,1443501950.035 [NAL9602] Loaded
2015-09-29T04:45:50.036Z,1443501950.036 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T04:45:50.078Z,1443501950.078 [Onboard] Loaded
2015-09-29T04:45:50.078Z,1443501950.078 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T04:45:50.090Z,1443501950.090 [Radio_Surface] Loaded
2015-09-29T04:45:50.090Z,1443501950.090 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T04:45:50.091Z,1443501950.091 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T04:45:50.092Z,1443501950.092 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T04:45:50.234Z,1443501950.234 [DAT] Loaded
2015-09-29T04:45:50.234Z,1443501950.234 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T04:45:50.241Z,1443501950.241 [SCPI] Loaded
2015-09-29T04:45:50.241Z,1443501950.241 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T04:45:50.242Z,1443501950.242 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T04:45:50.243Z,1443501950.243 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T04:45:50.364Z,1443501950.364 [BuoyancyServo] Loaded
2015-09-29T04:45:50.365Z,1443501950.365 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T04:45:50.377Z,1443501950.377 [ElevatorServo] Loaded
2015-09-29T04:45:50.378Z,1443501950.378 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T04:45:50.389Z,1443501950.389 [MassServo] Loaded
2015-09-29T04:45:50.390Z,1443501950.390 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T04:45:50.401Z,1443501950.401 [RudderServo] Loaded
2015-09-29T04:45:50.402Z,1443501950.402 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T04:45:50.413Z,1443501950.413 [ThrusterServo] Loaded
2015-09-29T04:45:50.414Z,1443501950.414 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T04:45:50.414Z,1443501950.414 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T04:45:50.415Z,1443501950.415 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T04:45:50.596Z,1443501950.596 [InternalSim] Loaded
2015-09-29T04:45:50.597Z,1443501950.597 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T04:45:50.597Z,1443501950.597 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T04:45:50.598Z,1443501950.598 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T04:45:50.637Z,1443501950.637 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T04:45:50.641Z,1443501950.641 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T04:45:50.642Z,1443501950.642 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T04:45:50.649Z,1443501950.649 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T04:45:50.650Z,1443501950.650 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T04:45:50.650Z,1443501950.650 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T04:45:50.655Z,1443501950.655 [Supervisor](INFO): Main Thread ID is 760
2015-09-29T04:45:50.655Z,1443501950.655 [Supervisor](DEBUG): Running supervisor.
2015-09-29T04:45:50.656Z,1443501950.656 [CommandLine ThreadHandler](INFO): Handler Thread ID is 814
2015-09-29T04:45:50.658Z,1443501950.658 [controlThread ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T04:45:50.659Z,1443501950.659 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T04:45:50.660Z,1443501950.660 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T04:45:50.662Z,1443501950.662 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T04:45:50.662Z,1443501950.662 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T04:45:50.663Z,1443501950.663 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T04:45:50.663Z,1443501950.663 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T04:45:50.664Z,1443501950.664 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T04:45:50.665Z,1443501950.665 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T04:45:50.666Z,1443501950.666 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T04:45:50.667Z,1443501950.667 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T04:45:50.667Z,1443501950.667 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T04:45:50.668Z,1443501950.668 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T04:45:50.668Z,1443501950.668 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T04:45:50.668Z,1443501950.668 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T04:45:50.669Z,1443501950.669 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T04:45:50.669Z,1443501950.669 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T04:45:50.670Z,1443501950.670 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T04:45:50.670Z,1443501950.670 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T04:45:50.670Z,1443501950.670 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T04:45:50.671Z,1443501950.671 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T04:45:50.672Z,1443501950.672 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T04:45:50.673Z,1443501950.673 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T04:45:50.673Z,1443501950.673 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T04:45:50.673Z,1443501950.673 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T04:45:50.674Z,1443501950.674 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T04:45:50.674Z,1443501950.674 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T04:45:50.675Z,1443501950.675 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T04:45:50.675Z,1443501950.675 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T04:45:50.680Z,1443501950.680 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T04:45:50.695Z,1443501950.695 [logger ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T04:45:50.727Z,1443501950.727 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T04:45:50.743Z,1443501950.743 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T04:45:50.805Z,1443501950.805 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T04:45:50.819Z,1443501950.819 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T04:45:50.866Z,1443501950.866 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T04:45:50.868Z,1443501950.868 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T04:45:50.868Z,1443501950.868 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T04:45:50.869Z,1443501950.869 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T04:45:50.869Z,1443501950.869 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T04:45:50.869Z,1443501950.869 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T04:45:50.869Z,1443501950.869 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T04:45:50.869Z,1443501950.869 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T04:45:50.870Z,1443501950.870 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T04:45:50.883Z,1443501950.883 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T04:45:50.915Z,1443501950.915 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T04:45:50.926Z,1443501950.926 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T04:45:50.946Z,1443501950.946 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T04:45:50.986Z,1443501950.986 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T04:45:51.011Z,1443501951.011 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T04:45:51.042Z,1443501951.042 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T04:45:51.057Z,1443501951.057 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T04:45:51.086Z,1443501951.086 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T04:45:51.089Z,1443501951.089 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T04:45:51.108Z,1443501951.108 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T04:45:51.322Z,1443501951.322 [DVL_micro](INFO): Initializing
2015-09-29T04:45:51.480Z,1443501951.480 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T04:45:51.499Z,1443501951.499 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T04:45:51.595Z,1443501951.595 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T04:45:51.615Z,1443501951.615 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T04:45:51.621Z,1443501951.621 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T04:45:51.639Z,1443501951.639 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T04:45:51.644Z,1443501951.644 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T04:45:51.881Z,1443501951.881 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T04:45:51.882Z,1443501951.882 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T04:46:00.674Z,1443501960.674 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:01.009Z,1443501961.009 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:01.150Z,1443501961.150 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:01.550Z,1443501961.550 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003000
2015-09-29T04:46:01.553Z,1443501961.553 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:01.948Z,1443501961.948 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:02.348Z,1443501962.348 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:02.749Z,1443501962.749 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:03.148Z,1443501963.148 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:03.548Z,1443501963.548 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:03.947Z,1443501963.947 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:04.346Z,1443501964.346 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:04.748Z,1443501964.748 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:05.148Z,1443501965.148 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:05.547Z,1443501965.547 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:05.947Z,1443501965.947 [NAL9602](INFO): No messages in MT queue
2015-09-29T04:46:05.948Z,1443501965.948 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:06.347Z,1443501966.347 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:06.748Z,1443501966.748 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:07.148Z,1443501967.148 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:07.547Z,1443501967.547 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:07.947Z,1443501967.947 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:08.347Z,1443501968.347 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:08.747Z,1443501968.747 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:09.148Z,1443501969.148 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:09.547Z,1443501969.547 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:09.947Z,1443501969.947 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:10.347Z,1443501970.347 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:10.747Z,1443501970.747 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:11.148Z,1443501971.148 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:11.162Z,1443501971.162 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T04:46:11.547Z,1443501971.547 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:11.947Z,1443501971.947 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:12.347Z,1443501972.347 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:12.747Z,1443501972.747 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:13.148Z,1443501973.148 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:13.549Z,1443501973.549 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:13.948Z,1443501973.948 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:14.347Z,1443501974.347 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:14.747Z,1443501974.747 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T04:46:15.147Z,1443501975.147 [D