2015-09-29T03:42:27.431Z,1443498147.431 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T03:42:27.434Z,1443498147.434 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T03:42:27.434Z,1443498147.434 [SyncHandler](INFO): Protected caller Thread ID is 761
2015-09-29T03:42:27.435Z,1443498147.435 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T03:42:27.436Z,1443498147.436 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T03:42:27.436Z,1443498147.436 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T03:42:27.439Z,1443498147.439 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T03:42:27.452Z,1443498147.452 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T03:42:27.456Z,1443498147.456 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T03:42:27.457Z,1443498147.457 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T03:42:27.457Z,1443498147.457 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T03:42:27.460Z,1443498147.460 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T03:42:27.460Z,1443498147.460 [logger ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T03:42:27.463Z,1443498147.463 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T03:42:27.463Z,1443498147.463 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T03:42:27.467Z,1443498147.467 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T03:42:27.891Z,1443498147.891 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T03:42:27.893Z,1443498147.893 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T03:42:28.089Z,1443498148.089 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T03:42:28.091Z,1443498148.091 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T03:42:28.241Z,1443498148.241 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T03:42:28.242Z,1443498148.242 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T03:42:28.393Z,1443498148.393 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T03:42:28.394Z,1443498148.394 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T03:42:28.493Z,1443498148.493 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T03:42:28.725Z,1443498148.725 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T03:42:28.726Z,1443498148.726 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T03:42:28.823Z,1443498148.823 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T03:42:28.824Z,1443498148.824 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T03:42:29.149Z,1443498149.149 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T03:42:29.150Z,1443498149.150 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T03:42:29.573Z,1443498149.573 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T03:42:29.574Z,1443498149.574 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T03:42:29.953Z,1443498149.953 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T03:42:29.955Z,1443498149.955 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T03:42:30.586Z,1443498150.586 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T03:42:30.586Z,1443498150.586 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T03:42:30.844Z,1443498150.844 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T03:42:30.845Z,1443498150.845 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T03:42:31.007Z,1443498151.007 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T03:42:31.008Z,1443498151.008 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T03:42:31.541Z,1443498151.541 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T03:42:31.542Z,1443498151.542 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T03:42:31.672Z,1443498151.672 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T03:42:31.674Z,1443498151.674 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T03:42:31.674Z,1443498151.674 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T03:42:31.679Z,1443498151.679 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T03:42:31.754Z,1443498151.754 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T03:42:31.894Z,1443498151.894 [VerticalControl] Loaded
2015-09-29T03:42:31.894Z,1443498151.894 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T03:42:31.895Z,1443498151.895 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T03:42:31.979Z,1443498151.979 [HorizontalControl] Loaded
2015-09-29T03:42:31.979Z,1443498151.979 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T03:42:31.980Z,1443498151.980 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T03:42:31.986Z,1443498151.986 [SpeedControl] Loaded
2015-09-29T03:42:31.986Z,1443498151.986 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T03:42:31.987Z,1443498151.987 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T03:42:31.988Z,1443498151.988 [LoopControl] Loaded
2015-09-29T03:42:31.988Z,1443498151.988 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T03:42:31.988Z,1443498151.988 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T03:42:31.989Z,1443498151.989 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T03:42:32.153Z,1443498152.153 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T03:42:32.170Z,1443498152.170 [SBIT] Loaded
2015-09-29T03:42:32.170Z,1443498152.170 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T03:42:32.171Z,1443498152.171 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T03:42:32.202Z,1443498152.202 [IBIT] Loaded
2015-09-29T03:42:32.202Z,1443498152.202 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T03:42:32.204Z,1443498152.204 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T03:42:32.363Z,1443498152.363 [CBIT] Loaded
2015-09-29T03:42:32.363Z,1443498152.363 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T03:42:32.364Z,1443498152.364 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T03:42:32.365Z,1443498152.365 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T03:42:32.406Z,1443498152.406 [DepthRateCalculator] Loaded
2015-09-29T03:42:32.407Z,1443498152.407 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T03:42:32.412Z,1443498152.412 [PitchRateCalculator] Loaded
2015-09-29T03:42:32.413Z,1443498152.413 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T03:42:32.425Z,1443498152.425 [SpeedCalculator] Loaded
2015-09-29T03:42:32.425Z,1443498152.425 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T03:42:32.447Z,1443498152.447 [TempGradientCalculator] Loaded
2015-09-29T03:42:32.447Z,1443498152.447 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T03:42:32.465Z,1443498152.465 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T03:42:32.465Z,1443498152.465 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T03:42:32.471Z,1443498152.471 [YawRateCalculator] Loaded
2015-09-29T03:42:32.471Z,1443498152.471 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T03:42:32.472Z,1443498152.472 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T03:42:32.476Z,1443498152.476 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T03:42:32.595Z,1443498152.595 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T03:42:32.595Z,1443498152.595 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T03:42:32.595Z,1443498152.595 [StratificationFrontDetector] Loaded
2015-09-29T03:42:32.596Z,1443498152.596 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T03:42:32.596Z,1443498152.596 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T03:42:32.597Z,1443498152.597 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T03:42:32.895Z,1443498152.895 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T03:42:32.896Z,1443498152.896 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T03:42:33.030Z,1443498153.030 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T03:42:33.030Z,1443498153.030 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T03:42:33.096Z,1443498153.096 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T03:42:33.096Z,1443498153.096 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T03:42:33.115Z,1443498153.115 [NavChart] Loaded
2015-09-29T03:42:33.115Z,1443498153.115 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T03:42:33.120Z,1443498153.120 [UniversalFixResidualReporter] Loaded
2015-09-29T03:42:33.121Z,1443498153.121 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T03:42:33.121Z,1443498153.121 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T03:42:33.122Z,1443498153.122 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T03:42:33.130Z,1443498153.130 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T03:42:33.131Z,1443498153.131 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T03:42:33.435Z,1443498153.435 [CTD_NeilBrown] Loaded
2015-09-29T03:42:33.436Z,1443498153.436 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T03:42:33.444Z,1443498153.444 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T03:42:33.444Z,1443498153.444 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T03:42:33.458Z,1443498153.458 [ISUS] Loaded
2015-09-29T03:42:33.458Z,1443498153.458 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T03:42:33.477Z,1443498153.477 [PAR_Licor] Loaded
2015-09-29T03:42:33.477Z,1443498153.477 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T03:42:33.535Z,1443498153.535 [WetLabsBB2FL] Loaded
2015-09-29T03:42:33.535Z,1443498153.535 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T03:42:33.540Z,1443498153.540 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T03:42:33.540Z,1443498153.540 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T03:42:33.541Z,1443498153.541 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T03:42:33.542Z,1443498153.542 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T03:42:34.276Z,1443498154.276 [AHRS_sp3003D] Loaded
2015-09-29T03:42:34.276Z,1443498154.276 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T03:42:34.474Z,1443498154.474 [DataOverHttps] Loaded
2015-09-29T03:42:34.474Z,1443498154.474 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T03:42:34.492Z,1443498154.492 [Depth_Keller] Loaded
2015-09-29T03:42:34.493Z,1443498154.493 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T03:42:34.498Z,1443498154.498 [DropWeight] Loaded
2015-09-29T03:42:34.498Z,1443498154.498 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T03:42:34.655Z,1443498154.655 [DVL_micro] Loaded
2015-09-29T03:42:34.655Z,1443498154.655 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T03:42:34.767Z,1443498154.767 [NAL9602] Loaded
2015-09-29T03:42:34.767Z,1443498154.767 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T03:42:34.816Z,1443498154.816 [Onboard] Loaded
2015-09-29T03:42:34.816Z,1443498154.816 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T03:42:34.832Z,1443498154.832 [Radio_Surface] Loaded
2015-09-29T03:42:34.833Z,1443498154.833 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T03:42:34.836Z,1443498154.836 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T03:42:34.836Z,1443498154.836 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T03:42:34.000Z,1443498155.000 [DAT] Loaded
2015-09-29T03:42:35.000Z,1443498155.000 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T03:42:35.007Z,1443498155.007 [SCPI] Loaded
2015-09-29T03:42:35.007Z,1443498155.007 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T03:42:35.008Z,1443498155.008 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T03:42:35.009Z,1443498155.009 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T03:42:35.147Z,1443498155.147 [BuoyancyServo] Loaded
2015-09-29T03:42:35.147Z,1443498155.147 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T03:42:35.160Z,1443498155.160 [ElevatorServo] Loaded
2015-09-29T03:42:35.161Z,1443498155.161 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T03:42:35.173Z,1443498155.173 [MassServo] Loaded
2015-09-29T03:42:35.173Z,1443498155.173 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T03:42:35.189Z,1443498155.189 [RudderServo] Loaded
2015-09-29T03:42:35.190Z,1443498155.190 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T03:42:35.201Z,1443498155.201 [ThrusterServo] Loaded
2015-09-29T03:42:35.202Z,1443498155.202 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T03:42:35.202Z,1443498155.202 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T03:42:35.203Z,1443498155.203 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T03:42:35.409Z,1443498155.409 [InternalSim] Loaded
2015-09-29T03:42:35.410Z,1443498155.410 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T03:42:35.410Z,1443498155.410 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T03:42:35.411Z,1443498155.411 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T03:42:35.454Z,1443498155.454 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T03:42:35.459Z,1443498155.459 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T03:42:35.460Z,1443498155.460 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T03:42:35.471Z,1443498155.471 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T03:42:35.472Z,1443498155.472 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T03:42:35.473Z,1443498155.473 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T03:42:35.478Z,1443498155.478 [Supervisor](INFO): Main Thread ID is 760
2015-09-29T03:42:35.478Z,1443498155.478 [Supervisor](DEBUG): Running supervisor.
2015-09-29T03:42:35.478Z,1443498155.478 [CommandLine ThreadHandler](INFO): Handler Thread ID is 814
2015-09-29T03:42:35.485Z,1443498155.485 [controlThread ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T03:42:35.485Z,1443498155.485 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T03:42:35.486Z,1443498155.486 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T03:42:35.488Z,1443498155.488 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T03:42:35.489Z,1443498155.489 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T03:42:35.489Z,1443498155.489 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T03:42:35.489Z,1443498155.489 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T03:42:35.490Z,1443498155.490 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T03:42:35.491Z,1443498155.491 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T03:42:35.492Z,1443498155.492 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T03:42:35.493Z,1443498155.493 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T03:42:35.493Z,1443498155.493 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T03:42:35.494Z,1443498155.494 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T03:42:35.494Z,1443498155.494 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T03:42:35.494Z,1443498155.494 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T03:42:35.495Z,1443498155.495 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T03:42:35.495Z,1443498155.495 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T03:42:35.495Z,1443498155.495 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T03:42:35.496Z,1443498155.496 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T03:42:35.496Z,1443498155.496 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T03:42:35.497Z,1443498155.497 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T03:42:35.497Z,1443498155.497 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T03:42:35.498Z,1443498155.498 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T03:42:35.498Z,1443498155.498 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T03:42:35.499Z,1443498155.499 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T03:42:35.499Z,1443498155.499 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T03:42:35.500Z,1443498155.500 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T03:42:35.500Z,1443498155.500 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T03:42:35.500Z,1443498155.500 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T03:42:35.505Z,1443498155.505 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T03:42:35.541Z,1443498155.541 [logger ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T03:42:35.590Z,1443498155.590 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T03:42:35.597Z,1443498155.597 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T03:42:35.637Z,1443498155.637 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T03:42:35.651Z,1443498155.651 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T03:42:35.665Z,1443498155.665 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T03:42:35.682Z,1443498155.682 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T03:42:35.685Z,1443498155.685 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T03:42:35.685Z,1443498155.685 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T03:42:35.685Z,1443498155.685 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T03:42:35.685Z,1443498155.685 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T03:42:35.686Z,1443498155.686 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T03:42:35.686Z,1443498155.686 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T03:42:35.686Z,1443498155.686 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T03:42:35.686Z,1443498155.686 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T03:42:35.743Z,1443498155.743 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T03:42:35.753Z,1443498155.753 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T03:42:35.754Z,1443498155.754 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T03:42:35.819Z,1443498155.819 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T03:42:35.820Z,1443498155.820 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T03:42:35.843Z,1443498155.843 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T03:42:35.858Z,1443498155.858 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T03:42:35.864Z,1443498155.864 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T03:42:35.899Z,1443498155.899 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T03:42:35.905Z,1443498155.905 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T03:42:36.168Z,1443498156.168 [DVL_micro](INFO): Initializing
2015-09-29T03:42:36.329Z,1443498156.329 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T03:42:36.360Z,1443498156.360 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T03:42:36.472Z,1443498156.472 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T03:42:36.478Z,1443498156.478 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T03:42:36.489Z,1443498156.489 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T03:42:36.508Z,1443498156.508 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T03:42:36.513Z,1443498156.513 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T03:42:36.751Z,1443498156.751 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T03:42:36.752Z,1443498156.752 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T03:42:45.857Z,1443498165.857 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:42:46.183Z,1443498166.183 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:42:46.340Z,1443498166.340 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:42:46.752Z,1443498166.752 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003300
2015-09-29T03:42:46.756Z,1443498166.756 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:42:47.137Z,1443498167.137 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:42:47.541Z,1443498167.541 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:42:47.941Z,1443498167.941 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:42:48.338Z,1443498168.338 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:42:48.737Z,1443498168.737 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:42:49.138Z,1443498169.138 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:42:49.536Z,1443498169.536 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:42:49.937Z,1443498169.937 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:42:50.337Z,1443498170.337 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:42:50.737Z,1443498170.737 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:42:51.137Z,1443498171.137 [NAL9602](INFO): No messages in MT queue
2015-09-29T03:42:51.138Z,1443498171.138 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:42:51.537Z,1443498171.537 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:42:51.937Z,1443498171.937 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:42:52.336Z,1443498172.336 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:42:52.737Z,1443498172.737 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:42:53.136Z,1443498173.136 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:42:53.537Z,1443498173.537 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:42:53.936Z,1443498173.936 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:42:54.336Z,1443498174.336 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:42:54.737Z,1443498174.737 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:42:55.137Z,1443498175.137 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:42:55.536Z,1443498175.536 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:42:55.940Z,1443498175.940 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:42:55.980Z,1443498175.980 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T03:42:56.338Z,1443498176.338 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:42:56.741Z,1443498176.741 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:42:57.137Z,1443498177.137 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:42:57.538Z,1443498177.538 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:42:57.937Z,1443498177.937 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:42:58.338Z,1443498178.338 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:42:58.737Z,1443498178.737 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:42:59.138Z,1443498179.138 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:42:59.537Z,1443498179.537 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:42:59.941Z,1443498179.941 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:43:00.337Z,1443498180.337 [D