2015-09-29T03:02:56.515Z,1443495776.515 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T03:02:56.518Z,1443495776.518 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T03:02:56.518Z,1443495776.518 [SyncHandler](INFO): Protected caller Thread ID is 761
2015-09-29T03:02:56.519Z,1443495776.519 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T03:02:56.522Z,1443495776.522 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T03:02:56.522Z,1443495776.522 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T03:02:56.525Z,1443495776.525 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T03:02:56.537Z,1443495776.537 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T03:02:56.542Z,1443495776.542 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T03:02:56.542Z,1443495776.542 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T03:02:56.543Z,1443495776.543 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T03:02:56.546Z,1443495776.546 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T03:02:56.546Z,1443495776.546 [logger ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T03:02:56.548Z,1443495776.548 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T03:02:56.549Z,1443495776.549 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T03:02:56.553Z,1443495776.553 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T03:02:56.941Z,1443495776.941 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T03:02:56.943Z,1443495776.943 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T03:02:57.135Z,1443495777.135 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T03:02:57.136Z,1443495777.136 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T03:02:57.279Z,1443495777.279 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T03:02:57.279Z,1443495777.279 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T03:02:57.427Z,1443495777.427 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T03:02:57.427Z,1443495777.427 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T03:02:57.522Z,1443495777.522 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T03:02:57.743Z,1443495777.743 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T03:02:57.744Z,1443495777.744 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T03:02:57.838Z,1443495777.838 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T03:02:57.839Z,1443495777.839 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T03:02:58.155Z,1443495778.155 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T03:02:58.155Z,1443495778.155 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T03:02:58.555Z,1443495778.555 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T03:02:58.556Z,1443495778.556 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T03:02:58.907Z,1443495778.907 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T03:02:58.909Z,1443495778.909 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T03:02:59.504Z,1443495779.504 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T03:02:59.504Z,1443495779.504 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T03:02:59.735Z,1443495779.735 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T03:02:59.736Z,1443495779.736 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T03:02:59.851Z,1443495779.851 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T03:02:59.851Z,1443495779.851 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T03:03:00.387Z,1443495780.387 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T03:03:00.388Z,1443495780.388 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T03:03:00.513Z,1443495780.513 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T03:03:00.515Z,1443495780.515 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T03:03:00.516Z,1443495780.516 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T03:03:00.524Z,1443495780.524 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T03:03:00.598Z,1443495780.598 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T03:03:00.731Z,1443495780.731 [VerticalControl] Loaded
2015-09-29T03:03:00.731Z,1443495780.731 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T03:03:00.732Z,1443495780.732 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T03:03:00.812Z,1443495780.812 [HorizontalControl] Loaded
2015-09-29T03:03:00.812Z,1443495780.812 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T03:03:00.813Z,1443495780.813 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T03:03:00.819Z,1443495780.819 [SpeedControl] Loaded
2015-09-29T03:03:00.819Z,1443495780.819 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T03:03:00.820Z,1443495780.820 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T03:03:00.820Z,1443495780.820 [LoopControl] Loaded
2015-09-29T03:03:00.820Z,1443495780.820 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T03:03:00.821Z,1443495780.821 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T03:03:00.821Z,1443495780.821 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T03:03:00.983Z,1443495780.983 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T03:03:00.995Z,1443495780.995 [SBIT] Loaded
2015-09-29T03:03:00.995Z,1443495780.995 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T03:03:00.996Z,1443495780.996 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T03:03:01.029Z,1443495781.029 [IBIT] Loaded
2015-09-29T03:03:01.030Z,1443495781.030 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T03:03:01.032Z,1443495781.032 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T03:03:01.185Z,1443495781.185 [CBIT] Loaded
2015-09-29T03:03:01.185Z,1443495781.185 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T03:03:01.186Z,1443495781.186 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T03:03:01.187Z,1443495781.187 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T03:03:01.224Z,1443495781.224 [DepthRateCalculator] Loaded
2015-09-29T03:03:01.224Z,1443495781.224 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T03:03:01.234Z,1443495781.234 [PitchRateCalculator] Loaded
2015-09-29T03:03:01.234Z,1443495781.234 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T03:03:01.245Z,1443495781.245 [SpeedCalculator] Loaded
2015-09-29T03:03:01.246Z,1443495781.246 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T03:03:01.267Z,1443495781.267 [TempGradientCalculator] Loaded
2015-09-29T03:03:01.267Z,1443495781.267 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T03:03:01.284Z,1443495781.284 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T03:03:01.284Z,1443495781.284 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T03:03:01.290Z,1443495781.290 [YawRateCalculator] Loaded
2015-09-29T03:03:01.290Z,1443495781.290 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T03:03:01.290Z,1443495781.290 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T03:03:01.291Z,1443495781.291 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T03:03:01.418Z,1443495781.418 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T03:03:01.418Z,1443495781.418 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T03:03:01.419Z,1443495781.419 [StratificationFrontDetector] Loaded
2015-09-29T03:03:01.419Z,1443495781.419 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T03:03:01.420Z,1443495781.420 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T03:03:01.420Z,1443495781.420 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T03:03:01.712Z,1443495781.712 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T03:03:01.713Z,1443495781.713 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T03:03:01.841Z,1443495781.841 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T03:03:01.841Z,1443495781.841 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T03:03:01.906Z,1443495781.906 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T03:03:01.906Z,1443495781.906 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T03:03:01.928Z,1443495781.928 [NavChart] Loaded
2015-09-29T03:03:01.928Z,1443495781.928 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T03:03:01.933Z,1443495781.933 [UniversalFixResidualReporter] Loaded
2015-09-29T03:03:01.934Z,1443495781.934 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T03:03:01.934Z,1443495781.934 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T03:03:01.935Z,1443495781.935 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T03:03:01.943Z,1443495781.943 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T03:03:01.944Z,1443495781.944 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T03:03:02.230Z,1443495782.230 [CTD_NeilBrown] Loaded
2015-09-29T03:03:02.231Z,1443495782.231 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T03:03:02.234Z,1443495782.234 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T03:03:02.234Z,1443495782.234 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T03:03:02.247Z,1443495782.247 [ISUS] Loaded
2015-09-29T03:03:02.247Z,1443495782.247 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T03:03:02.266Z,1443495782.266 [PAR_Licor] Loaded
2015-09-29T03:03:02.266Z,1443495782.266 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T03:03:02.321Z,1443495782.321 [WetLabsBB2FL] Loaded
2015-09-29T03:03:02.322Z,1443495782.322 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T03:03:02.326Z,1443495782.326 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T03:03:02.326Z,1443495782.326 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T03:03:02.327Z,1443495782.327 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T03:03:02.328Z,1443495782.328 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T03:03:03.058Z,1443495783.058 [AHRS_sp3003D] Loaded
2015-09-29T03:03:03.058Z,1443495783.058 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T03:03:03.248Z,1443495783.248 [DataOverHttps] Loaded
2015-09-29T03:03:03.249Z,1443495783.249 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T03:03:03.262Z,1443495783.262 [Depth_Keller] Loaded
2015-09-29T03:03:03.262Z,1443495783.262 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T03:03:03.267Z,1443495783.267 [DropWeight] Loaded
2015-09-29T03:03:03.268Z,1443495783.268 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T03:03:03.423Z,1443495783.423 [DVL_micro] Loaded
2015-09-29T03:03:03.423Z,1443495783.423 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T03:03:03.531Z,1443495783.531 [NAL9602] Loaded
2015-09-29T03:03:03.532Z,1443495783.532 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T03:03:03.578Z,1443495783.578 [Onboard] Loaded
2015-09-29T03:03:03.578Z,1443495783.578 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T03:03:03.590Z,1443495783.590 [Radio_Surface] Loaded
2015-09-29T03:03:03.590Z,1443495783.590 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T03:03:03.594Z,1443495783.594 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T03:03:03.594Z,1443495783.594 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T03:03:03.752Z,1443495783.752 [DAT] Loaded
2015-09-29T03:03:03.753Z,1443495783.753 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T03:03:03.759Z,1443495783.759 [SCPI] Loaded
2015-09-29T03:03:03.759Z,1443495783.759 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T03:03:03.760Z,1443495783.760 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T03:03:03.761Z,1443495783.761 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T03:03:03.890Z,1443495783.890 [BuoyancyServo] Loaded
2015-09-29T03:03:03.890Z,1443495783.890 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T03:03:03.907Z,1443495783.907 [ElevatorServo] Loaded
2015-09-29T03:03:03.908Z,1443495783.908 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T03:03:03.919Z,1443495783.919 [MassServo] Loaded
2015-09-29T03:03:03.920Z,1443495783.920 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T03:03:03.931Z,1443495783.931 [RudderServo] Loaded
2015-09-29T03:03:03.932Z,1443495783.932 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T03:03:03.947Z,1443495783.947 [ThrusterServo] Loaded
2015-09-29T03:03:03.947Z,1443495783.947 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T03:03:03.948Z,1443495783.948 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T03:03:03.948Z,1443495783.948 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T03:03:04.145Z,1443495784.145 [InternalSim] Loaded
2015-09-29T03:03:04.150Z,1443495784.150 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T03:03:04.150Z,1443495784.150 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T03:03:04.151Z,1443495784.151 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T03:03:04.195Z,1443495784.195 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T03:03:04.199Z,1443495784.199 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T03:03:04.200Z,1443495784.200 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T03:03:04.210Z,1443495784.210 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T03:03:04.214Z,1443495784.214 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T03:03:04.214Z,1443495784.214 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T03:03:04.219Z,1443495784.219 [Supervisor](INFO): Main Thread ID is 760
2015-09-29T03:03:04.219Z,1443495784.219 [Supervisor](DEBUG): Running supervisor.
2015-09-29T03:03:04.220Z,1443495784.220 [CommandLine ThreadHandler](INFO): Handler Thread ID is 814
2015-09-29T03:03:04.226Z,1443495784.226 [controlThread ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T03:03:04.227Z,1443495784.227 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T03:03:04.228Z,1443495784.228 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T03:03:04.230Z,1443495784.230 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T03:03:04.230Z,1443495784.230 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T03:03:04.231Z,1443495784.231 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T03:03:04.231Z,1443495784.231 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T03:03:04.232Z,1443495784.232 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T03:03:04.233Z,1443495784.233 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T03:03:04.234Z,1443495784.234 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T03:03:04.235Z,1443495784.235 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T03:03:04.235Z,1443495784.235 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T03:03:04.236Z,1443495784.236 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T03:03:04.236Z,1443495784.236 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T03:03:04.236Z,1443495784.236 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T03:03:04.237Z,1443495784.237 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T03:03:04.237Z,1443495784.237 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T03:03:04.237Z,1443495784.237 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T03:03:04.237Z,1443495784.237 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T03:03:04.238Z,1443495784.238 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T03:03:04.239Z,1443495784.239 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T03:03:04.239Z,1443495784.239 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T03:03:04.240Z,1443495784.240 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T03:03:04.240Z,1443495784.240 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T03:03:04.241Z,1443495784.241 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T03:03:04.241Z,1443495784.241 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T03:03:04.241Z,1443495784.241 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T03:03:04.242Z,1443495784.242 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T03:03:04.242Z,1443495784.242 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T03:03:04.247Z,1443495784.247 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T03:03:04.282Z,1443495784.282 [logger ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T03:03:04.382Z,1443495784.382 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T03:03:04.384Z,1443495784.384 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T03:03:04.462Z,1443495784.462 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T03:03:04.474Z,1443495784.474 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T03:03:04.492Z,1443495784.492 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T03:03:04.517Z,1443495784.517 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T03:03:04.519Z,1443495784.519 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T03:03:04.520Z,1443495784.520 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T03:03:04.520Z,1443495784.520 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T03:03:04.520Z,1443495784.520 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T03:03:04.520Z,1443495784.520 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T03:03:04.521Z,1443495784.521 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T03:03:04.521Z,1443495784.521 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T03:03:04.521Z,1443495784.521 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T03:03:04.525Z,1443495784.525 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T03:03:04.575Z,1443495784.575 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T03:03:04.576Z,1443495784.576 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T03:03:04.655Z,1443495784.655 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T03:03:04.656Z,1443495784.656 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T03:03:04.699Z,1443495784.699 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T03:03:04.702Z,1443495784.702 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T03:03:04.732Z,1443495784.732 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T03:03:04.735Z,1443495784.735 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T03:03:04.747Z,1443495784.747 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T03:03:04.934Z,1443495784.934 [DVL_micro](INFO): Initializing
2015-09-29T03:03:05.103Z,1443495785.103 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T03:03:05.127Z,1443495785.127 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T03:03:05.242Z,1443495785.242 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T03:03:05.254Z,1443495785.254 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T03:03:05.266Z,1443495785.266 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T03:03:05.275Z,1443495785.275 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T03:03:05.297Z,1443495785.297 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T03:03:05.528Z,1443495785.528 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T03:03:05.529Z,1443495785.529 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T03:03:14.609Z,1443495794.609 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:14.949Z,1443495794.949 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:15.115Z,1443495795.115 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:15.497Z,1443495795.497 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003000
2015-09-29T03:03:15.500Z,1443495795.500 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:15.898Z,1443495795.898 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:16.295Z,1443495796.295 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:16.696Z,1443495796.696 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:17.095Z,1443495797.095 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:17.495Z,1443495797.495 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:17.896Z,1443495797.896 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:18.295Z,1443495798.295 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:18.695Z,1443495798.695 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:19.096Z,1443495799.096 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:19.495Z,1443495799.495 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:19.904Z,1443495799.904 [NAL9602](INFO): No messages in MT queue
2015-09-29T03:03:19.905Z,1443495799.905 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:20.305Z,1443495800.305 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:20.704Z,1443495800.704 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:21.095Z,1443495801.095 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:21.504Z,1443495801.504 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:21.905Z,1443495801.905 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:22.303Z,1443495802.303 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:22.696Z,1443495802.696 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:23.094Z,1443495803.094 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:23.494Z,1443495803.494 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:23.895Z,1443495803.895 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:24.295Z,1443495804.295 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:24.695Z,1443495804.695 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:24.730Z,1443495804.730 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T03:03:25.096Z,1443495805.096 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:25.494Z,1443495805.494 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:25.896Z,1443495805.896 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:26.295Z,1443495806.295 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:26.695Z,1443495806.695 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:27.095Z,1443495807.095 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:27.495Z,1443495807.495 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:27.895Z,1443495807.895 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:28.295Z,1443495808.295 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:28.694Z,1443495808.694 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T03:03:29.095Z,1443495809.095 [D