2015-09-29T02:39:11.740Z,1443494351.740 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T02:39:11.744Z,1443494351.744 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T02:39:11.744Z,1443494351.744 [SyncHandler](INFO): Protected caller Thread ID is 761
2015-09-29T02:39:11.745Z,1443494351.745 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T02:39:11.746Z,1443494351.746 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T02:39:11.746Z,1443494351.746 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T02:39:11.749Z,1443494351.749 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T02:39:11.761Z,1443494351.761 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T02:39:11.766Z,1443494351.766 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T02:39:11.766Z,1443494351.766 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T02:39:11.767Z,1443494351.767 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T02:39:11.770Z,1443494351.770 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T02:39:11.770Z,1443494351.770 [logger ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T02:39:11.772Z,1443494351.772 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T02:39:11.773Z,1443494351.773 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T02:39:11.777Z,1443494351.777 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T02:39:12.171Z,1443494352.171 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T02:39:12.173Z,1443494352.173 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T02:39:12.366Z,1443494352.366 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T02:39:12.368Z,1443494352.368 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T02:39:12.511Z,1443494352.511 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T02:39:12.511Z,1443494352.511 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T02:39:12.659Z,1443494352.659 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T02:39:12.659Z,1443494352.659 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T02:39:12.754Z,1443494352.754 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T02:39:12.975Z,1443494352.975 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T02:39:12.975Z,1443494352.975 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T02:39:13.071Z,1443494353.071 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T02:39:13.071Z,1443494353.071 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T02:39:13.387Z,1443494353.387 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T02:39:13.388Z,1443494353.388 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T02:39:13.787Z,1443494353.787 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T02:39:13.788Z,1443494353.788 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T02:39:14.139Z,1443494354.139 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T02:39:14.141Z,1443494354.141 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T02:39:14.736Z,1443494354.736 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T02:39:14.736Z,1443494354.736 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T02:39:14.967Z,1443494354.967 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T02:39:14.968Z,1443494354.968 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T02:39:15.087Z,1443494355.087 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T02:39:15.087Z,1443494355.087 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T02:39:15.602Z,1443494355.602 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T02:39:15.603Z,1443494355.603 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T02:39:15.799Z,1443494355.799 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T02:39:15.801Z,1443494355.801 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T02:39:15.801Z,1443494355.801 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T02:39:15.805Z,1443494355.805 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T02:39:15.881Z,1443494355.881 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T02:39:16.014Z,1443494356.014 [VerticalControl] Loaded
2015-09-29T02:39:16.015Z,1443494356.015 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T02:39:16.015Z,1443494356.015 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T02:39:16.096Z,1443494356.096 [HorizontalControl] Loaded
2015-09-29T02:39:16.096Z,1443494356.096 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T02:39:16.097Z,1443494356.097 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T02:39:16.103Z,1443494356.103 [SpeedControl] Loaded
2015-09-29T02:39:16.103Z,1443494356.103 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T02:39:16.104Z,1443494356.104 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T02:39:16.104Z,1443494356.104 [LoopControl] Loaded
2015-09-29T02:39:16.105Z,1443494356.105 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T02:39:16.105Z,1443494356.105 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T02:39:16.106Z,1443494356.106 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T02:39:16.266Z,1443494356.266 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T02:39:16.279Z,1443494356.279 [SBIT] Loaded
2015-09-29T02:39:16.279Z,1443494356.279 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T02:39:16.280Z,1443494356.280 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T02:39:16.313Z,1443494356.313 [IBIT] Loaded
2015-09-29T02:39:16.313Z,1443494356.313 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T02:39:16.316Z,1443494356.316 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T02:39:16.469Z,1443494356.469 [CBIT] Loaded
2015-09-29T02:39:16.470Z,1443494356.470 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T02:39:16.470Z,1443494356.470 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T02:39:16.471Z,1443494356.471 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T02:39:16.512Z,1443494356.512 [DepthRateCalculator] Loaded
2015-09-29T02:39:16.512Z,1443494356.512 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T02:39:16.518Z,1443494356.518 [PitchRateCalculator] Loaded
2015-09-29T02:39:16.518Z,1443494356.518 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T02:39:16.529Z,1443494356.529 [SpeedCalculator] Loaded
2015-09-29T02:39:16.530Z,1443494356.530 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T02:39:16.551Z,1443494356.551 [TempGradientCalculator] Loaded
2015-09-29T02:39:16.551Z,1443494356.551 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T02:39:16.568Z,1443494356.568 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T02:39:16.568Z,1443494356.568 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T02:39:16.574Z,1443494356.574 [YawRateCalculator] Loaded
2015-09-29T02:39:16.574Z,1443494356.574 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T02:39:16.574Z,1443494356.574 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T02:39:16.575Z,1443494356.575 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T02:39:16.694Z,1443494356.694 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T02:39:16.694Z,1443494356.694 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T02:39:16.695Z,1443494356.695 [StratificationFrontDetector] Loaded
2015-09-29T02:39:16.695Z,1443494356.695 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T02:39:16.695Z,1443494356.695 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T02:39:16.696Z,1443494356.696 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T02:39:16.987Z,1443494356.987 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T02:39:16.987Z,1443494356.987 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T02:39:17.120Z,1443494357.120 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T02:39:17.121Z,1443494357.121 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T02:39:17.185Z,1443494357.185 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T02:39:17.185Z,1443494357.185 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T02:39:17.203Z,1443494357.203 [NavChart] Loaded
2015-09-29T02:39:17.203Z,1443494357.203 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T02:39:17.208Z,1443494357.208 [UniversalFixResidualReporter] Loaded
2015-09-29T02:39:17.209Z,1443494357.209 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T02:39:17.209Z,1443494357.209 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T02:39:17.210Z,1443494357.210 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T02:39:17.218Z,1443494357.218 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T02:39:17.219Z,1443494357.219 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T02:39:17.514Z,1443494357.514 [CTD_NeilBrown] Loaded
2015-09-29T02:39:17.515Z,1443494357.515 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T02:39:17.518Z,1443494357.518 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T02:39:17.518Z,1443494357.518 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T02:39:17.531Z,1443494357.531 [ISUS] Loaded
2015-09-29T02:39:17.531Z,1443494357.531 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T02:39:17.550Z,1443494357.550 [PAR_Licor] Loaded
2015-09-29T02:39:17.550Z,1443494357.550 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T02:39:17.606Z,1443494357.606 [WetLabsBB2FL] Loaded
2015-09-29T02:39:17.606Z,1443494357.606 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T02:39:17.610Z,1443494357.610 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T02:39:17.610Z,1443494357.610 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T02:39:17.611Z,1443494357.611 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T02:39:17.612Z,1443494357.612 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T02:39:18.346Z,1443494358.346 [AHRS_sp3003D] Loaded
2015-09-29T02:39:18.346Z,1443494358.346 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T02:39:18.538Z,1443494358.538 [DataOverHttps] Loaded
2015-09-29T02:39:18.538Z,1443494358.538 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T02:39:18.552Z,1443494358.552 [Depth_Keller] Loaded
2015-09-29T02:39:18.552Z,1443494358.552 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T02:39:18.557Z,1443494358.557 [DropWeight] Loaded
2015-09-29T02:39:18.557Z,1443494358.557 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T02:39:18.713Z,1443494358.713 [DVL_micro] Loaded
2015-09-29T02:39:18.713Z,1443494358.713 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T02:39:18.817Z,1443494358.817 [NAL9602] Loaded
2015-09-29T02:39:18.817Z,1443494358.817 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T02:39:18.868Z,1443494358.868 [Onboard] Loaded
2015-09-29T02:39:18.868Z,1443494358.868 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T02:39:18.880Z,1443494358.880 [Radio_Surface] Loaded
2015-09-29T02:39:18.880Z,1443494358.880 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T02:39:18.882Z,1443494358.882 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T02:39:18.882Z,1443494358.882 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T02:39:19.041Z,1443494359.041 [DAT] Loaded
2015-09-29T02:39:19.042Z,1443494359.042 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T02:39:19.048Z,1443494359.048 [SCPI] Loaded
2015-09-29T02:39:19.049Z,1443494359.049 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T02:39:19.049Z,1443494359.049 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T02:39:19.050Z,1443494359.050 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T02:39:19.180Z,1443494359.180 [BuoyancyServo] Loaded
2015-09-29T02:39:19.181Z,1443494359.181 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T02:39:19.193Z,1443494359.193 [ElevatorServo] Loaded
2015-09-29T02:39:19.194Z,1443494359.194 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T02:39:19.210Z,1443494359.210 [MassServo] Loaded
2015-09-29T02:39:19.210Z,1443494359.210 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T02:39:19.222Z,1443494359.222 [RudderServo] Loaded
2015-09-29T02:39:19.222Z,1443494359.222 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T02:39:19.233Z,1443494359.233 [ThrusterServo] Loaded
2015-09-29T02:39:19.234Z,1443494359.234 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T02:39:19.234Z,1443494359.234 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T02:39:19.235Z,1443494359.235 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T02:39:19.432Z,1443494359.432 [InternalSim] Loaded
2015-09-29T02:39:19.433Z,1443494359.433 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T02:39:19.433Z,1443494359.433 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T02:39:19.434Z,1443494359.434 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T02:39:19.478Z,1443494359.478 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T02:39:19.482Z,1443494359.482 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T02:39:19.483Z,1443494359.483 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T02:39:19.490Z,1443494359.490 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T02:39:19.494Z,1443494359.494 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T02:39:19.494Z,1443494359.494 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T02:39:19.499Z,1443494359.499 [Supervisor](INFO): Main Thread ID is 760
2015-09-29T02:39:19.499Z,1443494359.499 [Supervisor](DEBUG): Running supervisor.
2015-09-29T02:39:19.500Z,1443494359.500 [CommandLine ThreadHandler](INFO): Handler Thread ID is 814
2015-09-29T02:39:19.506Z,1443494359.506 [controlThread ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T02:39:19.507Z,1443494359.507 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T02:39:19.508Z,1443494359.508 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T02:39:19.510Z,1443494359.510 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T02:39:19.510Z,1443494359.510 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T02:39:19.511Z,1443494359.511 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T02:39:19.511Z,1443494359.511 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T02:39:19.512Z,1443494359.512 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T02:39:19.513Z,1443494359.513 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T02:39:19.514Z,1443494359.514 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T02:39:19.515Z,1443494359.515 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T02:39:19.515Z,1443494359.515 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T02:39:19.516Z,1443494359.516 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T02:39:19.516Z,1443494359.516 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T02:39:19.516Z,1443494359.516 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T02:39:19.517Z,1443494359.517 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T02:39:19.517Z,1443494359.517 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T02:39:19.517Z,1443494359.517 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T02:39:19.517Z,1443494359.517 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T02:39:19.518Z,1443494359.518 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T02:39:19.519Z,1443494359.519 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T02:39:19.519Z,1443494359.519 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T02:39:19.520Z,1443494359.520 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T02:39:19.520Z,1443494359.520 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T02:39:19.521Z,1443494359.521 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T02:39:19.521Z,1443494359.521 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T02:39:19.522Z,1443494359.522 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T02:39:19.522Z,1443494359.522 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T02:39:19.522Z,1443494359.522 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T02:39:19.528Z,1443494359.528 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T02:39:19.562Z,1443494359.562 [logger ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T02:39:19.650Z,1443494359.650 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T02:39:19.659Z,1443494359.659 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T02:39:19.729Z,1443494359.729 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T02:39:19.745Z,1443494359.745 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T02:39:19.783Z,1443494359.783 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T02:39:19.800Z,1443494359.800 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T02:39:19.805Z,1443494359.805 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T02:39:19.805Z,1443494359.805 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T02:39:19.806Z,1443494359.806 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T02:39:19.806Z,1443494359.806 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T02:39:19.806Z,1443494359.806 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T02:39:19.807Z,1443494359.807 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T02:39:19.807Z,1443494359.807 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T02:39:19.807Z,1443494359.807 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T02:39:19.843Z,1443494359.843 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T02:39:19.871Z,1443494359.871 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T02:39:19.872Z,1443494359.872 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T02:39:19.926Z,1443494359.926 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T02:39:19.927Z,1443494359.927 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T02:39:19.957Z,1443494359.957 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T02:39:19.977Z,1443494359.977 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T02:39:20.003Z,1443494360.003 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T02:39:20.006Z,1443494360.006 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T02:39:20.012Z,1443494360.012 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T02:39:20.213Z,1443494360.213 [DVL_micro](INFO): Initializing
2015-09-29T02:39:20.378Z,1443494360.378 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T02:39:20.391Z,1443494360.391 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T02:39:20.518Z,1443494360.518 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T02:39:20.530Z,1443494360.530 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T02:39:20.543Z,1443494360.543 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T02:39:20.558Z,1443494360.558 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T02:39:20.570Z,1443494360.570 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T02:39:20.832Z,1443494360.832 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T02:39:20.833Z,1443494360.833 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T02:39:29.979Z,1443494369.979 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:30.305Z,1443494370.305 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:30.472Z,1443494370.472 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:30.849Z,1443494370.849 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003000
2015-09-29T02:39:30.852Z,1443494370.852 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:31.247Z,1443494371.247 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:31.647Z,1443494371.647 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:32.051Z,1443494372.051 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:32.451Z,1443494372.451 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:32.847Z,1443494372.847 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:33.247Z,1443494373.247 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:33.647Z,1443494373.647 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:34.047Z,1443494374.047 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:34.446Z,1443494374.446 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:34.858Z,1443494374.858 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:35.246Z,1443494375.246 [NAL9602](INFO): No messages in MT queue
2015-09-29T02:39:35.247Z,1443494375.247 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:35.647Z,1443494375.647 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:36.047Z,1443494376.047 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:36.446Z,1443494376.446 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:36.846Z,1443494376.846 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:37.246Z,1443494377.246 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:37.646Z,1443494377.646 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:38.055Z,1443494378.055 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:38.447Z,1443494378.447 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:38.847Z,1443494378.847 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:39.250Z,1443494379.250 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:39.650Z,1443494379.650 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:40.047Z,1443494380.047 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:40.061Z,1443494380.061 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T02:39:40.450Z,1443494380.450 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:40.847Z,1443494380.847 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:41.247Z,1443494381.247 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:41.646Z,1443494381.646 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:42.047Z,1443494382.047 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:42.452Z,1443494382.452 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:42.846Z,1443494382.846 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:43.251Z,1443494383.251 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:43.647Z,1443494383.647 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:44.052Z,1443494384.052 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T02:39:44.450Z,1443494384.450 [D