2015-09-29T01:36:01.407Z,1443490561.407 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T01:36:01.413Z,1443490561.413 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T01:36:01.413Z,1443490561.413 [SyncHandler](INFO): Protected caller Thread ID is 761
2015-09-29T01:36:01.414Z,1443490561.414 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T01:36:01.416Z,1443490561.416 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T01:36:01.417Z,1443490561.417 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T01:36:01.420Z,1443490561.420 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T01:36:01.432Z,1443490561.432 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T01:36:01.436Z,1443490561.436 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T01:36:01.437Z,1443490561.437 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T01:36:01.438Z,1443490561.438 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T01:36:01.440Z,1443490561.440 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T01:36:01.441Z,1443490561.441 [logger ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T01:36:01.443Z,1443490561.443 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T01:36:01.443Z,1443490561.443 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T01:36:01.447Z,1443490561.447 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T01:36:01.830Z,1443490561.830 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T01:36:01.832Z,1443490561.832 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T01:36:02.020Z,1443490562.020 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T01:36:02.022Z,1443490562.022 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T01:36:02.165Z,1443490562.165 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T01:36:02.166Z,1443490562.166 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T01:36:02.313Z,1443490562.313 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T01:36:02.314Z,1443490562.314 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T01:36:02.408Z,1443490562.408 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T01:36:02.625Z,1443490562.625 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T01:36:02.626Z,1443490562.626 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T01:36:02.721Z,1443490562.721 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T01:36:02.722Z,1443490562.722 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T01:36:03.034Z,1443490563.034 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T01:36:03.034Z,1443490563.034 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T01:36:03.430Z,1443490563.430 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T01:36:03.430Z,1443490563.430 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T01:36:03.781Z,1443490563.781 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T01:36:03.783Z,1443490563.783 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T01:36:04.374Z,1443490564.374 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T01:36:04.375Z,1443490564.375 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T01:36:04.606Z,1443490564.606 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T01:36:04.606Z,1443490564.606 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T01:36:04.718Z,1443490564.718 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T01:36:04.718Z,1443490564.718 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T01:36:05.270Z,1443490565.270 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T01:36:05.271Z,1443490565.271 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T01:36:05.394Z,1443490565.394 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T01:36:05.396Z,1443490565.396 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T01:36:05.396Z,1443490565.396 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T01:36:05.401Z,1443490565.401 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T01:36:05.474Z,1443490565.474 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T01:36:05.607Z,1443490565.607 [VerticalControl] Loaded
2015-09-29T01:36:05.607Z,1443490565.607 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T01:36:05.608Z,1443490565.608 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T01:36:05.688Z,1443490565.688 [HorizontalControl] Loaded
2015-09-29T01:36:05.688Z,1443490565.688 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T01:36:05.688Z,1443490565.688 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T01:36:05.694Z,1443490565.694 [SpeedControl] Loaded
2015-09-29T01:36:05.695Z,1443490565.695 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T01:36:05.695Z,1443490565.695 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T01:36:05.696Z,1443490565.696 [LoopControl] Loaded
2015-09-29T01:36:05.696Z,1443490565.696 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T01:36:05.697Z,1443490565.697 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T01:36:05.697Z,1443490565.697 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T01:36:05.856Z,1443490565.856 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T01:36:05.868Z,1443490565.868 [SBIT] Loaded
2015-09-29T01:36:05.868Z,1443490565.868 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T01:36:05.869Z,1443490565.869 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T01:36:05.903Z,1443490565.903 [IBIT] Loaded
2015-09-29T01:36:05.903Z,1443490565.903 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T01:36:05.905Z,1443490565.905 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T01:36:06.059Z,1443490566.059 [CBIT] Loaded
2015-09-29T01:36:06.059Z,1443490566.059 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T01:36:06.060Z,1443490566.060 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T01:36:06.061Z,1443490566.061 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T01:36:06.102Z,1443490566.102 [DepthRateCalculator] Loaded
2015-09-29T01:36:06.102Z,1443490566.102 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T01:36:06.107Z,1443490566.107 [PitchRateCalculator] Loaded
2015-09-29T01:36:06.108Z,1443490566.108 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T01:36:06.119Z,1443490566.119 [SpeedCalculator] Loaded
2015-09-29T01:36:06.119Z,1443490566.119 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T01:36:06.140Z,1443490566.140 [TempGradientCalculator] Loaded
2015-09-29T01:36:06.141Z,1443490566.141 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T01:36:06.158Z,1443490566.158 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T01:36:06.158Z,1443490566.158 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T01:36:06.163Z,1443490566.163 [YawRateCalculator] Loaded
2015-09-29T01:36:06.164Z,1443490566.164 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T01:36:06.164Z,1443490566.164 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T01:36:06.165Z,1443490566.165 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T01:36:06.285Z,1443490566.285 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T01:36:06.285Z,1443490566.285 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T01:36:06.285Z,1443490566.285 [StratificationFrontDetector] Loaded
2015-09-29T01:36:06.285Z,1443490566.285 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T01:36:06.286Z,1443490566.286 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T01:36:06.286Z,1443490566.286 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T01:36:06.573Z,1443490566.573 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T01:36:06.573Z,1443490566.573 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T01:36:06.702Z,1443490566.702 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T01:36:06.702Z,1443490566.702 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T01:36:06.766Z,1443490566.766 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T01:36:06.766Z,1443490566.766 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T01:36:06.784Z,1443490566.784 [NavChart] Loaded
2015-09-29T01:36:06.784Z,1443490566.784 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T01:36:06.790Z,1443490566.790 [UniversalFixResidualReporter] Loaded
2015-09-29T01:36:06.790Z,1443490566.790 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T01:36:06.790Z,1443490566.790 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T01:36:06.791Z,1443490566.791 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T01:36:06.799Z,1443490566.799 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T01:36:06.800Z,1443490566.800 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T01:36:07.097Z,1443490567.097 [CTD_NeilBrown] Loaded
2015-09-29T01:36:07.097Z,1443490567.097 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T01:36:07.100Z,1443490567.100 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T01:36:07.101Z,1443490567.101 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T01:36:07.114Z,1443490567.114 [ISUS] Loaded
2015-09-29T01:36:07.114Z,1443490567.114 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T01:36:07.133Z,1443490567.133 [PAR_Licor] Loaded
2015-09-29T01:36:07.133Z,1443490567.133 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T01:36:07.188Z,1443490567.188 [WetLabsBB2FL] Loaded
2015-09-29T01:36:07.188Z,1443490567.188 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T01:36:07.192Z,1443490567.192 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T01:36:07.193Z,1443490567.193 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T01:36:07.193Z,1443490567.193 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T01:36:07.194Z,1443490567.194 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T01:36:07.918Z,1443490567.918 [AHRS_sp3003D] Loaded
2015-09-29T01:36:07.918Z,1443490567.918 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T01:36:08.113Z,1443490568.113 [DataOverHttps] Loaded
2015-09-29T01:36:08.113Z,1443490568.113 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T01:36:08.127Z,1443490568.127 [Depth_Keller] Loaded
2015-09-29T01:36:08.127Z,1443490568.127 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T01:36:08.132Z,1443490568.132 [DropWeight] Loaded
2015-09-29T01:36:08.136Z,1443490568.136 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T01:36:08.287Z,1443490568.287 [DVL_micro] Loaded
2015-09-29T01:36:08.287Z,1443490568.287 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T01:36:08.395Z,1443490568.395 [NAL9602] Loaded
2015-09-29T01:36:08.395Z,1443490568.395 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T01:36:08.442Z,1443490568.442 [Onboard] Loaded
2015-09-29T01:36:08.442Z,1443490568.442 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T01:36:08.453Z,1443490568.453 [Radio_Surface] Loaded
2015-09-29T01:36:08.454Z,1443490568.454 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T01:36:08.456Z,1443490568.456 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T01:36:08.457Z,1443490568.457 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T01:36:08.614Z,1443490568.614 [DAT] Loaded
2015-09-29T01:36:08.615Z,1443490568.615 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T01:36:08.621Z,1443490568.621 [SCPI] Loaded
2015-09-29T01:36:08.622Z,1443490568.622 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T01:36:08.622Z,1443490568.622 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T01:36:08.623Z,1443490568.623 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T01:36:08.753Z,1443490568.753 [BuoyancyServo] Loaded
2015-09-29T01:36:08.753Z,1443490568.753 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T01:36:08.770Z,1443490568.770 [ElevatorServo] Loaded
2015-09-29T01:36:08.771Z,1443490568.771 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T01:36:08.782Z,1443490568.782 [MassServo] Loaded
2015-09-29T01:36:08.783Z,1443490568.783 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T01:36:08.794Z,1443490568.794 [RudderServo] Loaded
2015-09-29T01:36:08.795Z,1443490568.795 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T01:36:08.806Z,1443490568.806 [ThrusterServo] Loaded
2015-09-29T01:36:08.806Z,1443490568.806 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T01:36:08.807Z,1443490568.807 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T01:36:08.807Z,1443490568.807 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T01:36:09.003Z,1443490569.003 [InternalSim] Loaded
2015-09-29T01:36:09.003Z,1443490569.003 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T01:36:09.003Z,1443490569.003 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T01:36:09.004Z,1443490569.004 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T01:36:09.047Z,1443490569.047 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T01:36:09.051Z,1443490569.051 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T01:36:09.052Z,1443490569.052 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T01:36:09.059Z,1443490569.059 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T01:36:09.060Z,1443490569.060 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T01:36:09.060Z,1443490569.060 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T01:36:09.065Z,1443490569.065 [Supervisor](INFO): Main Thread ID is 760
2015-09-29T01:36:09.065Z,1443490569.065 [Supervisor](DEBUG): Running supervisor.
2015-09-29T01:36:09.066Z,1443490569.066 [CommandLine ThreadHandler](INFO): Handler Thread ID is 814
2015-09-29T01:36:09.069Z,1443490569.069 [controlThread ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T01:36:09.069Z,1443490569.069 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T01:36:09.070Z,1443490569.070 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T01:36:09.072Z,1443490569.072 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T01:36:09.073Z,1443490569.073 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T01:36:09.073Z,1443490569.073 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T01:36:09.074Z,1443490569.074 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T01:36:09.074Z,1443490569.074 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T01:36:09.076Z,1443490569.076 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T01:36:09.076Z,1443490569.076 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T01:36:09.077Z,1443490569.077 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T01:36:09.077Z,1443490569.077 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T01:36:09.078Z,1443490569.078 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T01:36:09.079Z,1443490569.079 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T01:36:09.079Z,1443490569.079 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T01:36:09.079Z,1443490569.079 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T01:36:09.079Z,1443490569.079 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T01:36:09.080Z,1443490569.080 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T01:36:09.080Z,1443490569.080 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T01:36:09.081Z,1443490569.081 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T01:36:09.081Z,1443490569.081 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T01:36:09.082Z,1443490569.082 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T01:36:09.082Z,1443490569.082 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T01:36:09.083Z,1443490569.083 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T01:36:09.083Z,1443490569.083 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T01:36:09.084Z,1443490569.084 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T01:36:09.084Z,1443490569.084 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T01:36:09.084Z,1443490569.084 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T01:36:09.085Z,1443490569.085 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T01:36:09.090Z,1443490569.090 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T01:36:09.109Z,1443490569.109 [logger ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T01:36:09.149Z,1443490569.149 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T01:36:09.203Z,1443490569.203 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T01:36:09.210Z,1443490569.210 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T01:36:09.257Z,1443490569.257 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T01:36:09.265Z,1443490569.265 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T01:36:09.269Z,1443490569.269 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T01:36:09.269Z,1443490569.269 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T01:36:09.269Z,1443490569.269 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T01:36:09.270Z,1443490569.270 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T01:36:09.270Z,1443490569.270 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T01:36:09.270Z,1443490569.270 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T01:36:09.270Z,1443490569.270 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T01:36:09.271Z,1443490569.271 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T01:36:09.286Z,1443490569.286 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T01:36:09.327Z,1443490569.327 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T01:36:09.346Z,1443490569.346 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T01:36:09.347Z,1443490569.347 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T01:36:09.412Z,1443490569.412 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T01:36:09.433Z,1443490569.433 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T01:36:09.459Z,1443490569.459 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T01:36:09.462Z,1443490569.462 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T01:36:09.489Z,1443490569.489 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T01:36:09.492Z,1443490569.492 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T01:36:09.522Z,1443490569.522 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T01:36:09.704Z,1443490569.704 [DVL_micro](INFO): Initializing
2015-09-29T01:36:09.857Z,1443490569.857 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T01:36:09.880Z,1443490569.880 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T01:36:09.984Z,1443490569.984 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T01:36:10.001Z,1443490570.001 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T01:36:10.014Z,1443490570.014 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T01:36:10.025Z,1443490570.025 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T01:36:10.037Z,1443490570.037 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T01:36:10.289Z,1443490570.289 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T01:36:10.290Z,1443490570.290 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T01:36:19.138Z,1443490579.138 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:19.475Z,1443490579.475 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:19.611Z,1443490579.611 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:20.012Z,1443490580.012 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003000
2015-09-29T01:36:20.015Z,1443490580.015 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:20.410Z,1443490580.410 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:20.810Z,1443490580.810 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:21.210Z,1443490581.210 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:21.610Z,1443490581.610 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:22.009Z,1443490582.009 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:22.410Z,1443490582.410 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:22.809Z,1443490582.809 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:23.209Z,1443490583.209 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:23.615Z,1443490583.615 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:24.015Z,1443490584.015 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:24.414Z,1443490584.414 [NAL9602](INFO): No messages in MT queue
2015-09-29T01:36:24.415Z,1443490584.415 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:24.810Z,1443490584.810 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:25.209Z,1443490585.209 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:25.609Z,1443490585.609 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:26.009Z,1443490586.009 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:26.409Z,1443490586.409 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:26.809Z,1443490586.809 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:27.209Z,1443490587.209 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:27.609Z,1443490587.609 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:28.009Z,1443490588.009 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:28.409Z,1443490588.409 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:28.809Z,1443490588.809 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:29.209Z,1443490589.209 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:29.609Z,1443490589.609 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:29.623Z,1443490589.623 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T01:36:30.009Z,1443490590.009 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:30.410Z,1443490590.410 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:30.810Z,1443490590.810 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:31.211Z,1443490591.211 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:31.609Z,1443490591.609 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:32.010Z,1443490592.010 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:32.409Z,1443490592.409 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:32.810Z,1443490592.810 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:33.209Z,1443490593.209 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:36:33.609Z,1443490593.609 [D