2015-09-29T01:12:15.321Z,1443489135.321 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T01:12:15.325Z,1443489135.325 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T01:12:15.325Z,1443489135.325 [SyncHandler](INFO): Protected caller Thread ID is 761
2015-09-29T01:12:15.326Z,1443489135.326 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T01:12:15.329Z,1443489135.329 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T01:12:15.329Z,1443489135.329 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T01:12:15.332Z,1443489135.332 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T01:12:15.345Z,1443489135.345 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T01:12:15.349Z,1443489135.349 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T01:12:15.349Z,1443489135.349 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T01:12:15.350Z,1443489135.350 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T01:12:15.353Z,1443489135.353 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T01:12:15.353Z,1443489135.353 [logger ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T01:12:15.355Z,1443489135.355 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T01:12:15.356Z,1443489135.356 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T01:12:15.360Z,1443489135.360 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T01:12:15.754Z,1443489135.754 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T01:12:15.756Z,1443489135.756 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T01:12:15.950Z,1443489135.950 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T01:12:15.952Z,1443489135.952 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T01:12:16.096Z,1443489136.096 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T01:12:16.097Z,1443489136.097 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T01:12:16.246Z,1443489136.246 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T01:12:16.246Z,1443489136.246 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T01:12:16.341Z,1443489136.341 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T01:12:16.562Z,1443489136.562 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T01:12:16.562Z,1443489136.562 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T01:12:16.657Z,1443489136.657 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T01:12:16.658Z,1443489136.658 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T01:12:16.972Z,1443489136.972 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T01:12:16.973Z,1443489136.973 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T01:12:17.374Z,1443489137.374 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T01:12:17.375Z,1443489137.375 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T01:12:17.730Z,1443489137.730 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T01:12:17.732Z,1443489137.732 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T01:12:18.330Z,1443489138.330 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T01:12:18.331Z,1443489138.331 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T01:12:18.562Z,1443489138.562 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T01:12:18.563Z,1443489138.563 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T01:12:18.678Z,1443489138.678 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T01:12:18.678Z,1443489138.678 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T01:12:19.211Z,1443489139.211 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T01:12:19.211Z,1443489139.211 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T01:12:19.360Z,1443489139.360 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T01:12:19.362Z,1443489139.362 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T01:12:19.363Z,1443489139.363 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T01:12:19.367Z,1443489139.367 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T01:12:19.444Z,1443489139.444 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T01:12:19.586Z,1443489139.586 [VerticalControl] Loaded
2015-09-29T01:12:19.586Z,1443489139.586 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T01:12:19.587Z,1443489139.587 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T01:12:19.666Z,1443489139.666 [HorizontalControl] Loaded
2015-09-29T01:12:19.666Z,1443489139.666 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T01:12:19.667Z,1443489139.667 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T01:12:19.678Z,1443489139.678 [SpeedControl] Loaded
2015-09-29T01:12:19.678Z,1443489139.678 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T01:12:19.678Z,1443489139.678 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T01:12:19.679Z,1443489139.679 [LoopControl] Loaded
2015-09-29T01:12:19.679Z,1443489139.679 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T01:12:19.680Z,1443489139.680 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T01:12:19.681Z,1443489139.681 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T01:12:19.847Z,1443489139.847 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T01:12:19.859Z,1443489139.859 [SBIT] Loaded
2015-09-29T01:12:19.859Z,1443489139.859 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T01:12:19.860Z,1443489139.860 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T01:12:19.899Z,1443489139.899 [IBIT] Loaded
2015-09-29T01:12:19.899Z,1443489139.899 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T01:12:19.901Z,1443489139.901 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T01:12:20.057Z,1443489140.057 [CBIT] Loaded
2015-09-29T01:12:20.057Z,1443489140.057 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T01:12:20.057Z,1443489140.057 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T01:12:20.058Z,1443489140.058 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T01:12:20.104Z,1443489140.104 [DepthRateCalculator] Loaded
2015-09-29T01:12:20.104Z,1443489140.104 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T01:12:20.110Z,1443489140.110 [PitchRateCalculator] Loaded
2015-09-29T01:12:20.110Z,1443489140.110 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T01:12:20.122Z,1443489140.122 [SpeedCalculator] Loaded
2015-09-29T01:12:20.122Z,1443489140.122 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T01:12:20.144Z,1443489140.144 [TempGradientCalculator] Loaded
2015-09-29T01:12:20.144Z,1443489140.144 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T01:12:20.162Z,1443489140.162 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T01:12:20.163Z,1443489140.163 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T01:12:20.168Z,1443489140.168 [YawRateCalculator] Loaded
2015-09-29T01:12:20.168Z,1443489140.168 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T01:12:20.169Z,1443489140.169 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T01:12:20.169Z,1443489140.169 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T01:12:20.292Z,1443489140.292 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T01:12:20.292Z,1443489140.292 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T01:12:20.297Z,1443489140.297 [StratificationFrontDetector] Loaded
2015-09-29T01:12:20.297Z,1443489140.297 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T01:12:20.298Z,1443489140.298 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T01:12:20.298Z,1443489140.298 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T01:12:20.607Z,1443489140.607 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T01:12:20.607Z,1443489140.607 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T01:12:20.740Z,1443489140.740 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T01:12:20.740Z,1443489140.740 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T01:12:20.806Z,1443489140.806 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T01:12:20.807Z,1443489140.807 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T01:12:20.829Z,1443489140.829 [NavChart] Loaded
2015-09-29T01:12:20.829Z,1443489140.829 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T01:12:20.835Z,1443489140.835 [UniversalFixResidualReporter] Loaded
2015-09-29T01:12:20.835Z,1443489140.835 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T01:12:20.835Z,1443489140.835 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T01:12:20.836Z,1443489140.836 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T01:12:20.845Z,1443489140.845 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T01:12:20.846Z,1443489140.846 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T01:12:21.148Z,1443489141.148 [CTD_NeilBrown] Loaded
2015-09-29T01:12:21.153Z,1443489141.153 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T01:12:21.157Z,1443489141.157 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T01:12:21.157Z,1443489141.157 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T01:12:21.170Z,1443489141.170 [ISUS] Loaded
2015-09-29T01:12:21.171Z,1443489141.171 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T01:12:21.190Z,1443489141.190 [PAR_Licor] Loaded
2015-09-29T01:12:21.190Z,1443489141.190 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T01:12:21.248Z,1443489141.248 [WetLabsBB2FL] Loaded
2015-09-29T01:12:21.248Z,1443489141.248 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T01:12:21.253Z,1443489141.253 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T01:12:21.253Z,1443489141.253 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T01:12:21.254Z,1443489141.254 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T01:12:21.255Z,1443489141.255 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T01:12:21.991Z,1443489141.991 [AHRS_sp3003D] Loaded
2015-09-29T01:12:21.991Z,1443489141.991 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T01:12:22.191Z,1443489142.191 [DataOverHttps] Loaded
2015-09-29T01:12:22.192Z,1443489142.192 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T01:12:22.210Z,1443489142.210 [Depth_Keller] Loaded
2015-09-29T01:12:22.210Z,1443489142.210 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T01:12:22.215Z,1443489142.215 [DropWeight] Loaded
2015-09-29T01:12:22.215Z,1443489142.215 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T01:12:22.372Z,1443489142.372 [DVL_micro] Loaded
2015-09-29T01:12:22.372Z,1443489142.372 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T01:12:22.484Z,1443489142.484 [NAL9602] Loaded
2015-09-29T01:12:22.484Z,1443489142.484 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T01:12:22.533Z,1443489142.533 [Onboard] Loaded
2015-09-29T01:12:22.534Z,1443489142.534 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T01:12:22.550Z,1443489142.550 [Radio_Surface] Loaded
2015-09-29T01:12:22.550Z,1443489142.550 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T01:12:22.553Z,1443489142.553 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T01:12:22.553Z,1443489142.553 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T01:12:22.717Z,1443489142.717 [DAT] Loaded
2015-09-29T01:12:22.717Z,1443489142.717 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T01:12:22.725Z,1443489142.725 [SCPI] Loaded
2015-09-29T01:12:22.725Z,1443489142.725 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T01:12:22.726Z,1443489142.726 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T01:12:22.726Z,1443489142.726 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T01:12:22.865Z,1443489142.865 [BuoyancyServo] Loaded
2015-09-29T01:12:22.865Z,1443489142.865 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T01:12:22.878Z,1443489142.878 [ElevatorServo] Loaded
2015-09-29T01:12:22.878Z,1443489142.878 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T01:12:22.895Z,1443489142.895 [MassServo] Loaded
2015-09-29T01:12:22.895Z,1443489142.895 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T01:12:22.907Z,1443489142.907 [RudderServo] Loaded
2015-09-29T01:12:22.908Z,1443489142.908 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T01:12:22.919Z,1443489142.919 [ThrusterServo] Loaded
2015-09-29T01:12:22.919Z,1443489142.919 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T01:12:22.920Z,1443489142.920 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T01:12:22.921Z,1443489142.921 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T01:12:23.131Z,1443489143.131 [InternalSim] Loaded
2015-09-29T01:12:23.131Z,1443489143.131 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T01:12:23.131Z,1443489143.131 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T01:12:23.132Z,1443489143.132 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T01:12:23.173Z,1443489143.173 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T01:12:23.181Z,1443489143.181 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T01:12:23.182Z,1443489143.182 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T01:12:23.189Z,1443489143.189 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T01:12:23.193Z,1443489143.193 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T01:12:23.193Z,1443489143.193 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T01:12:23.198Z,1443489143.198 [Supervisor](INFO): Main Thread ID is 760
2015-09-29T01:12:23.198Z,1443489143.198 [Supervisor](DEBUG): Running supervisor.
2015-09-29T01:12:23.199Z,1443489143.199 [CommandLine ThreadHandler](INFO): Handler Thread ID is 814
2015-09-29T01:12:23.205Z,1443489143.205 [controlThread ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T01:12:23.206Z,1443489143.206 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T01:12:23.207Z,1443489143.207 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T01:12:23.209Z,1443489143.209 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T01:12:23.209Z,1443489143.209 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T01:12:23.210Z,1443489143.210 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T01:12:23.210Z,1443489143.210 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T01:12:23.211Z,1443489143.211 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T01:12:23.212Z,1443489143.212 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T01:12:23.213Z,1443489143.213 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T01:12:23.214Z,1443489143.214 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T01:12:23.214Z,1443489143.214 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T01:12:23.215Z,1443489143.215 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T01:12:23.215Z,1443489143.215 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T01:12:23.215Z,1443489143.215 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T01:12:23.216Z,1443489143.216 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T01:12:23.216Z,1443489143.216 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T01:12:23.216Z,1443489143.216 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T01:12:23.216Z,1443489143.216 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T01:12:23.217Z,1443489143.217 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T01:12:23.218Z,1443489143.218 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T01:12:23.218Z,1443489143.218 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T01:12:23.219Z,1443489143.219 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T01:12:23.219Z,1443489143.219 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T01:12:23.220Z,1443489143.220 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T01:12:23.220Z,1443489143.220 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T01:12:23.220Z,1443489143.220 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T01:12:23.221Z,1443489143.221 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T01:12:23.221Z,1443489143.221 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T01:12:23.226Z,1443489143.226 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T01:12:23.261Z,1443489143.261 [logger ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T01:12:23.357Z,1443489143.357 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T01:12:23.359Z,1443489143.359 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T01:12:23.428Z,1443489143.428 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T01:12:23.443Z,1443489143.443 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T01:12:23.455Z,1443489143.455 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T01:12:23.474Z,1443489143.474 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T01:12:23.477Z,1443489143.477 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T01:12:23.477Z,1443489143.477 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T01:12:23.478Z,1443489143.478 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T01:12:23.478Z,1443489143.478 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T01:12:23.478Z,1443489143.478 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T01:12:23.478Z,1443489143.478 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T01:12:23.479Z,1443489143.479 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T01:12:23.479Z,1443489143.479 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T01:12:23.509Z,1443489143.509 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T01:12:23.531Z,1443489143.531 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T01:12:23.532Z,1443489143.532 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T01:12:23.585Z,1443489143.585 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T01:12:23.586Z,1443489143.586 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T01:12:23.621Z,1443489143.621 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T01:12:23.624Z,1443489143.624 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T01:12:23.646Z,1443489143.646 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T01:12:23.665Z,1443489143.665 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T01:12:23.671Z,1443489143.671 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T01:12:23.942Z,1443489143.942 [DVL_micro](INFO): Initializing
2015-09-29T01:12:24.091Z,1443489144.091 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T01:12:24.123Z,1443489144.123 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T01:12:24.230Z,1443489144.230 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T01:12:24.257Z,1443489144.257 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T01:12:24.273Z,1443489144.273 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T01:12:24.285Z,1443489144.285 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T01:12:24.301Z,1443489144.301 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T01:12:24.540Z,1443489144.540 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T01:12:24.541Z,1443489144.541 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T01:12:33.629Z,1443489153.629 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:33.984Z,1443489153.984 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:34.116Z,1443489154.116 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:34.517Z,1443489154.517 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003400
2015-09-29T01:12:34.520Z,1443489154.520 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:34.915Z,1443489154.915 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:35.315Z,1443489155.315 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:35.715Z,1443489155.715 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:36.114Z,1443489156.114 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:36.514Z,1443489156.514 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:36.914Z,1443489156.914 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:37.313Z,1443489157.313 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:37.714Z,1443489157.714 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:38.119Z,1443489158.119 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:38.520Z,1443489158.520 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:38.915Z,1443489158.915 [NAL9602](INFO): No messages in MT queue
2015-09-29T01:12:38.916Z,1443489158.916 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:39.319Z,1443489159.319 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:39.716Z,1443489159.716 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:40.116Z,1443489160.116 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:40.516Z,1443489160.516 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:40.920Z,1443489160.920 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:41.318Z,1443489161.318 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:41.718Z,1443489161.718 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:42.117Z,1443489162.117 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:42.516Z,1443489162.516 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:42.919Z,1443489162.919 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:43.320Z,1443489163.320 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:43.718Z,1443489163.718 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:43.733Z,1443489163.733 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T01:12:44.116Z,1443489164.116 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:44.517Z,1443489164.517 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:44.917Z,1443489164.917 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:45.317Z,1443489165.317 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:45.734Z,1443489165.734 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:46.117Z,1443489166.117 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:46.517Z,1443489166.517 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:46.919Z,1443489166.919 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:47.324Z,1443489167.324 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:47.724Z,1443489167.724 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:12:48.118Z,1443489168.118 [D