2015-09-29T01:04:20.727Z,1443488660.727 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T01:04:20.730Z,1443488660.730 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T01:04:20.730Z,1443488660.730 [SyncHandler](INFO): Protected caller Thread ID is 761
2015-09-29T01:04:20.731Z,1443488660.731 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T01:04:20.733Z,1443488660.733 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T01:04:20.733Z,1443488660.733 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T01:04:20.736Z,1443488660.736 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T01:04:20.748Z,1443488660.748 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T01:04:20.753Z,1443488660.753 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T01:04:20.753Z,1443488660.753 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T01:04:20.754Z,1443488660.754 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T01:04:20.757Z,1443488660.757 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T01:04:20.757Z,1443488660.757 [logger ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T01:04:20.759Z,1443488660.759 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T01:04:20.760Z,1443488660.760 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T01:04:20.763Z,1443488660.763 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T01:04:21.166Z,1443488661.166 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T01:04:21.168Z,1443488661.168 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T01:04:21.360Z,1443488661.360 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T01:04:21.362Z,1443488661.362 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T01:04:21.510Z,1443488661.510 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T01:04:21.510Z,1443488661.510 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T01:04:21.666Z,1443488661.666 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T01:04:21.666Z,1443488661.666 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T01:04:21.762Z,1443488661.762 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T01:04:21.990Z,1443488661.990 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T01:04:21.990Z,1443488661.990 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T01:04:22.089Z,1443488662.089 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T01:04:22.090Z,1443488662.090 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T01:04:22.410Z,1443488662.410 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T01:04:22.411Z,1443488662.411 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T01:04:22.822Z,1443488662.822 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T01:04:22.823Z,1443488662.823 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T01:04:23.192Z,1443488663.192 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T01:04:23.194Z,1443488663.194 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T01:04:23.800Z,1443488663.800 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T01:04:23.801Z,1443488663.801 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T01:04:24.038Z,1443488664.038 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T01:04:24.039Z,1443488664.039 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T01:04:24.160Z,1443488664.160 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T01:04:24.161Z,1443488664.161 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T01:04:24.734Z,1443488664.734 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T01:04:24.735Z,1443488664.735 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T01:04:24.862Z,1443488664.862 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T01:04:24.864Z,1443488664.864 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T01:04:24.864Z,1443488664.864 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T01:04:24.869Z,1443488664.869 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T01:04:24.944Z,1443488664.944 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T01:04:25.079Z,1443488665.079 [VerticalControl] Loaded
2015-09-29T01:04:25.079Z,1443488665.079 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T01:04:25.080Z,1443488665.080 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T01:04:25.161Z,1443488665.161 [HorizontalControl] Loaded
2015-09-29T01:04:25.162Z,1443488665.162 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T01:04:25.162Z,1443488665.162 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T01:04:25.168Z,1443488665.168 [SpeedControl] Loaded
2015-09-29T01:04:25.168Z,1443488665.168 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T01:04:25.173Z,1443488665.173 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T01:04:25.174Z,1443488665.174 [LoopControl] Loaded
2015-09-29T01:04:25.174Z,1443488665.174 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T01:04:25.175Z,1443488665.175 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T01:04:25.175Z,1443488665.175 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T01:04:25.337Z,1443488665.337 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T01:04:25.353Z,1443488665.353 [SBIT] Loaded
2015-09-29T01:04:25.354Z,1443488665.354 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T01:04:25.355Z,1443488665.355 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T01:04:25.384Z,1443488665.384 [IBIT] Loaded
2015-09-29T01:04:25.389Z,1443488665.389 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T01:04:25.391Z,1443488665.391 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T01:04:25.543Z,1443488665.543 [CBIT] Loaded
2015-09-29T01:04:25.543Z,1443488665.543 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T01:04:25.544Z,1443488665.544 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T01:04:25.545Z,1443488665.545 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T01:04:25.588Z,1443488665.588 [DepthRateCalculator] Loaded
2015-09-29T01:04:25.588Z,1443488665.588 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T01:04:25.593Z,1443488665.593 [PitchRateCalculator] Loaded
2015-09-29T01:04:25.594Z,1443488665.594 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T01:04:25.609Z,1443488665.609 [SpeedCalculator] Loaded
2015-09-29T01:04:25.610Z,1443488665.610 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T01:04:25.627Z,1443488665.627 [TempGradientCalculator] Loaded
2015-09-29T01:04:25.627Z,1443488665.627 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T01:04:25.644Z,1443488665.644 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T01:04:25.649Z,1443488665.649 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T01:04:25.654Z,1443488665.654 [YawRateCalculator] Loaded
2015-09-29T01:04:25.655Z,1443488665.655 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T01:04:25.655Z,1443488665.655 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T01:04:25.656Z,1443488665.656 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T01:04:25.776Z,1443488665.776 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T01:04:25.776Z,1443488665.776 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T01:04:25.776Z,1443488665.776 [StratificationFrontDetector] Loaded
2015-09-29T01:04:25.776Z,1443488665.776 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T01:04:25.777Z,1443488665.777 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T01:04:25.777Z,1443488665.777 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T01:04:26.070Z,1443488666.070 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T01:04:26.071Z,1443488666.071 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T01:04:26.201Z,1443488666.201 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T01:04:26.201Z,1443488666.201 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T01:04:26.266Z,1443488666.266 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T01:04:26.267Z,1443488666.267 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T01:04:26.285Z,1443488666.285 [NavChart] Loaded
2015-09-29T01:04:26.285Z,1443488666.285 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T01:04:26.290Z,1443488666.290 [UniversalFixResidualReporter] Loaded
2015-09-29T01:04:26.291Z,1443488666.291 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T01:04:26.291Z,1443488666.291 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T01:04:26.292Z,1443488666.292 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T01:04:26.300Z,1443488666.300 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T01:04:26.305Z,1443488666.305 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T01:04:26.611Z,1443488666.611 [CTD_NeilBrown] Loaded
2015-09-29T01:04:26.611Z,1443488666.611 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T01:04:26.613Z,1443488666.613 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T01:04:26.613Z,1443488666.613 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T01:04:26.626Z,1443488666.626 [ISUS] Loaded
2015-09-29T01:04:26.626Z,1443488666.626 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T01:04:26.645Z,1443488666.645 [PAR_Licor] Loaded
2015-09-29T01:04:26.646Z,1443488666.646 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T01:04:26.702Z,1443488666.702 [WetLabsBB2FL] Loaded
2015-09-29T01:04:26.702Z,1443488666.702 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T01:04:26.705Z,1443488666.705 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T01:04:26.705Z,1443488666.705 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T01:04:26.706Z,1443488666.706 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T01:04:26.706Z,1443488666.706 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T01:04:27.354Z,1443488667.354 [AHRS_sp3003D] Loaded
2015-09-29T01:04:27.355Z,1443488667.355 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T01:04:27.535Z,1443488667.535 [DataOverHttps] Loaded
2015-09-29T01:04:27.535Z,1443488667.535 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T01:04:27.549Z,1443488667.549 [Depth_Keller] Loaded
2015-09-29T01:04:27.549Z,1443488667.549 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T01:04:27.554Z,1443488667.554 [DropWeight] Loaded
2015-09-29T01:04:27.555Z,1443488667.555 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T01:04:27.695Z,1443488667.695 [DVL_micro] Loaded
2015-09-29T01:04:27.696Z,1443488667.696 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T01:04:27.792Z,1443488667.792 [NAL9602] Loaded
2015-09-29T01:04:27.792Z,1443488667.792 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T01:04:27.835Z,1443488667.835 [Onboard] Loaded
2015-09-29T01:04:27.836Z,1443488667.836 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T01:04:27.847Z,1443488667.847 [Radio_Surface] Loaded
2015-09-29T01:04:27.848Z,1443488667.848 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T01:04:27.849Z,1443488667.849 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T01:04:27.849Z,1443488667.849 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T01:04:27.993Z,1443488667.993 [DAT] Loaded
2015-09-29T01:04:27.993Z,1443488667.993 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T01:04:27.000Z,1443488668.000 [SCPI] Loaded
2015-09-29T01:04:27.000Z,1443488668.000 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T01:04:28.001Z,1443488668.001 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T01:04:28.001Z,1443488668.001 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T01:04:28.125Z,1443488668.125 [BuoyancyServo] Loaded
2015-09-29T01:04:28.125Z,1443488668.125 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T01:04:28.138Z,1443488668.138 [ElevatorServo] Loaded
2015-09-29T01:04:28.138Z,1443488668.138 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T01:04:28.150Z,1443488668.150 [MassServo] Loaded
2015-09-29T01:04:28.150Z,1443488668.150 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T01:04:28.162Z,1443488668.162 [RudderServo] Loaded
2015-09-29T01:04:28.163Z,1443488668.163 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T01:04:28.174Z,1443488668.174 [ThrusterServo] Loaded
2015-09-29T01:04:28.174Z,1443488668.174 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T01:04:28.175Z,1443488668.175 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T01:04:28.175Z,1443488668.175 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T01:04:28.359Z,1443488668.359 [InternalSim] Loaded
2015-09-29T01:04:28.359Z,1443488668.359 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T01:04:28.360Z,1443488668.360 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T01:04:28.360Z,1443488668.360 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T01:04:28.400Z,1443488668.400 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T01:04:28.404Z,1443488668.404 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T01:04:28.405Z,1443488668.405 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T01:04:28.412Z,1443488668.412 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T01:04:28.413Z,1443488668.413 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T01:04:28.413Z,1443488668.413 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T01:04:28.418Z,1443488668.418 [Supervisor](INFO): Main Thread ID is 760
2015-09-29T01:04:28.418Z,1443488668.418 [Supervisor](DEBUG): Running supervisor.
2015-09-29T01:04:28.419Z,1443488668.419 [CommandLine ThreadHandler](INFO): Handler Thread ID is 814
2015-09-29T01:04:28.422Z,1443488668.422 [controlThread ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T01:04:28.422Z,1443488668.422 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T01:04:28.423Z,1443488668.423 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T01:04:28.425Z,1443488668.425 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T01:04:28.426Z,1443488668.426 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T01:04:28.426Z,1443488668.426 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T01:04:28.426Z,1443488668.426 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T01:04:28.427Z,1443488668.427 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T01:04:28.428Z,1443488668.428 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T01:04:28.429Z,1443488668.429 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T01:04:28.430Z,1443488668.430 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T01:04:28.430Z,1443488668.430 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T01:04:28.431Z,1443488668.431 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T01:04:28.431Z,1443488668.431 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T01:04:28.432Z,1443488668.432 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T01:04:28.432Z,1443488668.432 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T01:04:28.432Z,1443488668.432 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T01:04:28.433Z,1443488668.433 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T01:04:28.433Z,1443488668.433 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T01:04:28.434Z,1443488668.434 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T01:04:28.434Z,1443488668.434 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T01:04:28.435Z,1443488668.435 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T01:04:28.436Z,1443488668.436 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T01:04:28.436Z,1443488668.436 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T01:04:28.437Z,1443488668.437 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T01:04:28.437Z,1443488668.437 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T01:04:28.437Z,1443488668.437 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T01:04:28.438Z,1443488668.438 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T01:04:28.438Z,1443488668.438 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T01:04:28.444Z,1443488668.444 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T01:04:28.469Z,1443488668.469 [logger ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T01:04:28.561Z,1443488668.561 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T01:04:28.569Z,1443488668.569 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T01:04:28.615Z,1443488668.615 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T01:04:28.625Z,1443488668.625 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T01:04:28.642Z,1443488668.642 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T01:04:28.660Z,1443488668.660 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T01:04:28.662Z,1443488668.662 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T01:04:28.662Z,1443488668.662 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T01:04:28.663Z,1443488668.663 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T01:04:28.663Z,1443488668.663 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T01:04:28.663Z,1443488668.663 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T01:04:28.663Z,1443488668.663 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T01:04:28.664Z,1443488668.664 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T01:04:28.664Z,1443488668.664 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T01:04:28.710Z,1443488668.710 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T01:04:28.758Z,1443488668.758 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T01:04:28.759Z,1443488668.759 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T01:04:28.820Z,1443488668.820 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T01:04:28.835Z,1443488668.835 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T01:04:28.858Z,1443488668.858 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T01:04:28.883Z,1443488668.883 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T01:04:28.900Z,1443488668.900 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T01:04:28.923Z,1443488668.923 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T01:04:28.929Z,1443488668.929 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T01:04:29.110Z,1443488669.110 [DVL_micro](INFO): Initializing
2015-09-29T01:04:29.250Z,1443488669.250 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T01:04:29.281Z,1443488669.281 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T01:04:29.407Z,1443488669.407 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T01:04:29.429Z,1443488669.429 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T01:04:29.446Z,1443488669.446 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T01:04:29.457Z,1443488669.457 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T01:04:29.465Z,1443488669.465 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T01:04:29.741Z,1443488669.741 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T01:04:29.742Z,1443488669.742 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T01:04:38.599Z,1443488678.599 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:38.924Z,1443488678.924 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:39.085Z,1443488679.085 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:39.484Z,1443488679.484 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003100
2015-09-29T01:04:39.487Z,1443488679.487 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:39.882Z,1443488679.882 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:40.282Z,1443488680.282 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:40.682Z,1443488680.682 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:41.081Z,1443488681.081 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:41.495Z,1443488681.495 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:41.882Z,1443488681.882 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:42.281Z,1443488682.281 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:42.681Z,1443488682.681 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:43.081Z,1443488683.081 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:43.491Z,1443488683.491 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:43.891Z,1443488683.891 [NAL9602](INFO): No messages in MT queue
2015-09-29T01:04:43.892Z,1443488683.892 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:44.292Z,1443488684.292 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:44.691Z,1443488684.691 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:45.090Z,1443488685.090 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:45.491Z,1443488685.491 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:45.891Z,1443488685.891 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:46.289Z,1443488686.289 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:46.691Z,1443488686.691 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:47.091Z,1443488687.091 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:47.481Z,1443488687.481 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:47.891Z,1443488687.891 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:48.291Z,1443488688.291 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:48.691Z,1443488688.691 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:49.091Z,1443488689.091 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:49.118Z,1443488689.118 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T01:04:49.492Z,1443488689.492 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:49.881Z,1443488689.881 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:50.291Z,1443488690.291 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:50.692Z,1443488690.692 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:51.086Z,1443488691.086 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:51.482Z,1443488691.482 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:51.882Z,1443488691.882 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:52.282Z,1443488692.282 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:52.682Z,1443488692.682 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T01:04:53.082Z,1443488693.082 [D