2015-09-29T00:08:52.290Z,1443485332.290 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T00:08:52.294Z,1443485332.294 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T00:08:52.294Z,1443485332.294 [SyncHandler](INFO): Protected caller Thread ID is 761
2015-09-29T00:08:52.295Z,1443485332.295 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T00:08:52.298Z,1443485332.298 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T00:08:52.298Z,1443485332.298 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T00:08:52.301Z,1443485332.301 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T00:08:52.314Z,1443485332.314 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T00:08:52.318Z,1443485332.318 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T00:08:52.318Z,1443485332.318 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T00:08:52.319Z,1443485332.319 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T00:08:52.322Z,1443485332.322 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T00:08:52.322Z,1443485332.322 [logger ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T00:08:52.324Z,1443485332.324 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T00:08:52.325Z,1443485332.325 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T00:08:52.328Z,1443485332.328 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T00:08:52.723Z,1443485332.723 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T00:08:52.725Z,1443485332.725 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T00:08:52.918Z,1443485332.918 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T00:08:52.920Z,1443485332.920 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T00:08:53.067Z,1443485333.067 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T00:08:53.067Z,1443485333.067 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T00:08:53.215Z,1443485333.215 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T00:08:53.216Z,1443485333.216 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T00:08:53.314Z,1443485333.314 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T00:08:53.535Z,1443485333.535 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T00:08:53.535Z,1443485333.535 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T00:08:53.630Z,1443485333.630 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T00:08:53.631Z,1443485333.631 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T00:08:53.948Z,1443485333.948 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T00:08:53.948Z,1443485333.948 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T00:08:54.347Z,1443485334.347 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T00:08:54.348Z,1443485334.348 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T00:08:54.699Z,1443485334.699 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T00:08:54.701Z,1443485334.701 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T00:08:55.291Z,1443485335.291 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T00:08:55.292Z,1443485335.292 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T00:08:55.523Z,1443485335.523 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T00:08:55.523Z,1443485335.523 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T00:08:55.634Z,1443485335.634 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T00:08:55.635Z,1443485335.635 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T00:08:56.162Z,1443485336.162 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T00:08:56.163Z,1443485336.163 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T00:08:56.285Z,1443485336.285 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T00:08:56.287Z,1443485336.287 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T00:08:56.287Z,1443485336.287 [Supervisor](IMPORTANT): Reading configuration overrides from Data/persisted.cfg
2015-09-29T00:08:56.296Z,1443485336.296 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T00:08:56.371Z,1443485336.371 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T00:08:56.507Z,1443485336.507 [VerticalControl] Loaded
2015-09-29T00:08:56.508Z,1443485336.508 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T00:08:56.508Z,1443485336.508 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T00:08:56.591Z,1443485336.591 [HorizontalControl] Loaded
2015-09-29T00:08:56.591Z,1443485336.591 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T00:08:56.592Z,1443485336.592 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T00:08:56.602Z,1443485336.602 [SpeedControl] Loaded
2015-09-29T00:08:56.602Z,1443485336.602 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T00:08:56.603Z,1443485336.603 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T00:08:56.604Z,1443485336.604 [LoopControl] Loaded
2015-09-29T00:08:56.604Z,1443485336.604 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T00:08:56.604Z,1443485336.604 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T00:08:56.605Z,1443485336.605 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T00:08:56.766Z,1443485336.766 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T00:08:56.778Z,1443485336.778 [SBIT] Loaded
2015-09-29T00:08:56.778Z,1443485336.778 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T00:08:56.779Z,1443485336.779 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T00:08:56.813Z,1443485336.813 [IBIT] Loaded
2015-09-29T00:08:56.814Z,1443485336.814 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T00:08:56.816Z,1443485336.816 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T00:08:56.972Z,1443485336.972 [CBIT] Loaded
2015-09-29T00:08:56.972Z,1443485336.972 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T00:08:56.973Z,1443485336.973 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T00:08:56.974Z,1443485336.974 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T00:08:57.015Z,1443485337.015 [DepthRateCalculator] Loaded
2015-09-29T00:08:57.015Z,1443485337.015 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T00:08:57.021Z,1443485337.021 [PitchRateCalculator] Loaded
2015-09-29T00:08:57.021Z,1443485337.021 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T00:08:57.037Z,1443485337.037 [SpeedCalculator] Loaded
2015-09-29T00:08:57.037Z,1443485337.037 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T00:08:57.055Z,1443485337.055 [TempGradientCalculator] Loaded
2015-09-29T00:08:57.055Z,1443485337.055 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T00:08:57.076Z,1443485337.076 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T00:08:57.077Z,1443485337.077 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T00:08:57.082Z,1443485337.082 [YawRateCalculator] Loaded
2015-09-29T00:08:57.083Z,1443485337.083 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T00:08:57.083Z,1443485337.083 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T00:08:57.084Z,1443485337.084 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T00:08:57.208Z,1443485337.208 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T00:08:57.208Z,1443485337.208 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T00:08:57.208Z,1443485337.208 [StratificationFrontDetector] Loaded
2015-09-29T00:08:57.209Z,1443485337.209 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T00:08:57.209Z,1443485337.209 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T00:08:57.210Z,1443485337.210 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T00:08:57.507Z,1443485337.507 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T00:08:57.508Z,1443485337.508 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T00:08:57.641Z,1443485337.641 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T00:08:57.642Z,1443485337.642 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T00:08:57.702Z,1443485337.702 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T00:08:57.703Z,1443485337.703 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T00:08:57.725Z,1443485337.725 [NavChart] Loaded
2015-09-29T00:08:57.725Z,1443485337.725 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T00:08:57.730Z,1443485337.730 [UniversalFixResidualReporter] Loaded
2015-09-29T00:08:57.731Z,1443485337.731 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T00:08:57.731Z,1443485337.731 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T00:08:57.732Z,1443485337.732 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T00:08:57.740Z,1443485337.740 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T00:08:57.741Z,1443485337.741 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T00:08:58.039Z,1443485338.039 [CTD_NeilBrown] Loaded
2015-09-29T00:08:58.039Z,1443485338.039 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T00:08:58.042Z,1443485338.042 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T00:08:58.042Z,1443485338.042 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T00:08:58.055Z,1443485338.055 [ISUS] Loaded
2015-09-29T00:08:58.055Z,1443485338.055 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T00:08:58.070Z,1443485338.070 [PAR_Licor] Loaded
2015-09-29T00:08:58.071Z,1443485338.071 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T00:08:58.131Z,1443485338.131 [WetLabsBB2FL] Loaded
2015-09-29T00:08:58.132Z,1443485338.132 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T00:08:58.134Z,1443485338.134 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T00:08:58.134Z,1443485338.134 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T00:08:58.135Z,1443485338.135 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T00:08:58.135Z,1443485338.135 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T00:08:58.855Z,1443485338.855 [AHRS_sp3003D] Loaded
2015-09-29T00:08:58.856Z,1443485338.856 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T00:08:59.049Z,1443485339.049 [DataOverHttps] Loaded
2015-09-29T00:08:59.049Z,1443485339.049 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T00:08:59.063Z,1443485339.063 [Depth_Keller] Loaded
2015-09-29T00:08:59.063Z,1443485339.063 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T00:08:59.068Z,1443485339.068 [DropWeight] Loaded
2015-09-29T00:08:59.068Z,1443485339.068 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T00:08:59.225Z,1443485339.225 [DVL_micro] Loaded
2015-09-29T00:08:59.226Z,1443485339.226 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T00:08:59.335Z,1443485339.335 [NAL9602] Loaded
2015-09-29T00:08:59.335Z,1443485339.335 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T00:08:59.382Z,1443485339.382 [Onboard] Loaded
2015-09-29T00:08:59.383Z,1443485339.383 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T00:08:59.394Z,1443485339.394 [Radio_Surface] Loaded
2015-09-29T00:08:59.395Z,1443485339.395 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T00:08:59.398Z,1443485339.398 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T00:08:59.398Z,1443485339.398 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T00:08:59.562Z,1443485339.562 [DAT] Loaded
2015-09-29T00:08:59.562Z,1443485339.562 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T00:08:59.569Z,1443485339.569 [SCPI] Loaded
2015-09-29T00:08:59.569Z,1443485339.569 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T00:08:59.570Z,1443485339.570 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T00:08:59.571Z,1443485339.571 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T00:08:59.705Z,1443485339.705 [BuoyancyServo] Loaded
2015-09-29T00:08:59.705Z,1443485339.705 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T00:08:59.722Z,1443485339.722 [ElevatorServo] Loaded
2015-09-29T00:08:59.723Z,1443485339.723 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T00:08:59.735Z,1443485339.735 [MassServo] Loaded
2015-09-29T00:08:59.736Z,1443485339.736 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T00:08:59.748Z,1443485339.748 [RudderServo] Loaded
2015-09-29T00:08:59.748Z,1443485339.748 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T00:08:59.764Z,1443485339.764 [ThrusterServo] Loaded
2015-09-29T00:08:59.764Z,1443485339.764 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T00:08:59.764Z,1443485339.764 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T00:08:59.765Z,1443485339.765 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T00:08:59.972Z,1443485339.972 [InternalSim] Loaded
2015-09-29T00:08:59.972Z,1443485339.972 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T00:08:59.973Z,1443485339.973 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T00:08:59.973Z,1443485339.973 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T00:09:00.017Z,1443485340.017 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T00:09:00.021Z,1443485340.021 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T00:09:00.022Z,1443485340.022 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T00:09:00.029Z,1443485340.029 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T00:09:00.052Z,1443485340.052 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T00:09:00.053Z,1443485340.053 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T00:09:00.058Z,1443485340.058 [Supervisor](INFO): Main Thread ID is 760
2015-09-29T00:09:00.058Z,1443485340.058 [Supervisor](DEBUG): Running supervisor.
2015-09-29T00:09:00.059Z,1443485340.059 [CommandLine ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T00:09:00.075Z,1443485340.075 [controlThread ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T00:09:00.076Z,1443485340.076 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T00:09:00.076Z,1443485340.076 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T00:09:00.078Z,1443485340.078 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T00:09:00.079Z,1443485340.079 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T00:09:00.079Z,1443485340.079 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T00:09:00.080Z,1443485340.080 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T00:09:00.080Z,1443485340.080 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T00:09:00.082Z,1443485340.082 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T00:09:00.082Z,1443485340.082 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T00:09:00.083Z,1443485340.083 [SBIT](INFO): Beginning SBIT in 32.000000 seconds.
2015-09-29T00:09:00.084Z,1443485340.084 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T00:09:00.084Z,1443485340.084 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T00:09:00.085Z,1443485340.085 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T00:09:00.085Z,1443485340.085 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T00:09:00.086Z,1443485340.086 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T00:09:00.086Z,1443485340.086 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T00:09:00.086Z,1443485340.086 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T00:09:00.087Z,1443485340.087 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T00:09:00.088Z,1443485340.088 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T00:09:00.088Z,1443485340.088 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T00:09:00.089Z,1443485340.089 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T00:09:00.089Z,1443485340.089 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T00:09:00.090Z,1443485340.090 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T00:09:00.090Z,1443485340.090 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T00:09:00.091Z,1443485340.091 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T00:09:00.091Z,1443485340.091 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T00:09:00.091Z,1443485340.091 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T00:09:00.097Z,1443485340.097 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T00:09:00.139Z,1443485340.139 [logger ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T00:09:00.174Z,1443485340.174 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T00:09:00.358Z,1443485340.358 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T00:09:00.370Z,1443485340.370 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T00:09:00.439Z,1443485340.439 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 821
2015-09-29T00:09:00.447Z,1443485340.447 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T00:09:00.449Z,1443485340.449 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T00:09:00.449Z,1443485340.449 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T00:09:00.449Z,1443485340.449 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T00:09:00.450Z,1443485340.450 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T00:09:00.450Z,1443485340.450 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T00:09:00.450Z,1443485340.450 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T00:09:00.450Z,1443485340.450 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T00:09:00.451Z,1443485340.451 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T00:09:00.468Z,1443485340.468 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T00:09:00.496Z,1443485340.496 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T00:09:00.530Z,1443485340.530 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T00:09:00.531Z,1443485340.531 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T00:09:00.565Z,1443485340.565 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T00:09:00.566Z,1443485340.566 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T00:09:00.600Z,1443485340.600 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T00:09:00.616Z,1443485340.616 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T00:09:00.643Z,1443485340.643 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T00:09:00.646Z,1443485340.646 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T00:09:00.667Z,1443485340.667 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T00:09:00.935Z,1443485340.935 [DVL_micro](INFO): Initializing
2015-09-29T00:09:01.113Z,1443485341.113 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T00:09:01.142Z,1443485341.142 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T00:09:01.246Z,1443485341.246 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T00:09:01.254Z,1443485341.254 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T00:09:01.266Z,1443485341.266 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T00:09:01.286Z,1443485341.286 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T00:09:01.291Z,1443485341.291 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T00:09:01.543Z,1443485341.543 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T00:09:01.544Z,1443485341.544 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T00:09:10.657Z,1443485350.657 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:10.997Z,1443485350.997 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:11.128Z,1443485351.128 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:11.529Z,1443485351.529 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003000
2015-09-29T00:09:11.532Z,1443485351.532 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:11.927Z,1443485351.927 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:12.328Z,1443485352.328 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:12.727Z,1443485352.727 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:13.127Z,1443485353.127 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:13.526Z,1443485353.526 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:13.926Z,1443485353.926 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:14.328Z,1443485354.328 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:14.726Z,1443485354.726 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:15.136Z,1443485355.136 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:15.536Z,1443485355.536 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:15.936Z,1443485355.936 [NAL9602](INFO): No messages in MT queue
2015-09-29T00:09:15.937Z,1443485355.937 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:16.336Z,1443485356.336 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:16.737Z,1443485356.737 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:17.126Z,1443485357.126 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:17.536Z,1443485357.536 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:17.936Z,1443485357.936 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:18.336Z,1443485358.336 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:18.736Z,1443485358.736 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:19.126Z,1443485359.126 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:19.535Z,1443485359.535 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:19.936Z,1443485359.936 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:20.336Z,1443485360.336 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:20.726Z,1443485360.726 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:21.136Z,1443485361.136 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:21.536Z,1443485361.536 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:21.936Z,1443485361.936 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:22.336Z,1443485362.336 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:22.726Z,1443485362.726 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:23.136Z,1443485363.136 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:23.536Z,1443485363.536 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:23.936Z,1443485363.936 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:24.336Z,1443485364.336 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:24.736Z,1443485364.736 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:25.137Z,1443485365.137 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T00:09:25.536Z,1443485365.536 [DAT](ERROR): Could not read simulated DAT measurements