INFO 2020-07-30 06:14:36,318Z lrauvNc4ToNetcdf.py processResampleNc4File():1005 Reading /mbari/LRAUV/daphne/missionlogs/2014/20140917_20140922/20140918T175253/201409181753_201409181933.nc4 file...
INFO 2020-07-30 06:14:36,318Z lrauvNc4ToNetcdf.py processResampleNc4File():1006 After copying to /tmp/201409181753_201409181933.nc4
INFO 2020-07-30 06:14:37,028Z lrauvNc4ToNetcdf.py processResampleNc4File():1008 Read file /mbari/LRAUV/daphne/missionlogs/2014/20140917_20140922/20140918T175253/201409181753_201409181933.nc4
INFO 2020-07-30 06:14:37,042Z lrauvNc4ToNetcdf.py createSeries():240 latitude :   18 v_t values found before 2014-09-18 17:53:00 and after 2014-09-18 19:33:00
INFO 2020-07-30 06:14:37,159Z lrauvNc4ToNetcdf.py createSeries():240 longitude:   18 v_t values found before 2014-09-18 17:53:00 and after 2014-09-18 19:33:00
INFO 2020-07-30 06:14:37,274Z lrauvNc4ToNetcdf.py createSeries():240 depth    :   47 v_t values found before 2014-09-18 17:53:00 and after 2014-09-18 19:33:00
INFO 2020-07-30 06:14:37,425Z lrauvNc4ToNetcdf.py createSeries():240 time     :   46 v_t values found before 2014-09-18 17:53:00 and after 2014-09-18 19:33:00
INFO 2020-07-30 06:14:37,576Z lrauvNc4ToNetcdf.py createSeries():240 latitude :   18 v_t values found before 2014-09-18 17:53:00 and after 2014-09-18 19:33:00
INFO 2020-07-30 06:14:37,691Z lrauvNc4ToNetcdf.py createSeries():240 longitude:   18 v_t values found before 2014-09-18 17:53:00 and after 2014-09-18 19:33:00
INFO 2020-07-30 06:14:37,805Z lrauvNc4ToNetcdf.py createSeries():240 depth    :   47 v_t values found before 2014-09-18 17:53:00 and after 2014-09-18 19:33:00
INFO 2020-07-30 06:14:37,956Z lrauvNc4ToNetcdf.py createSeries():240 time     :   46 v_t values found before 2014-09-18 17:53:00 and after 2014-09-18 19:33:00
INFO 2020-07-30 06:14:38,107Z lrauvNc4ToNetcdf.py createSeries():240 latitude :   18 v_t values found before 2014-09-18 17:53:00 and after 2014-09-18 19:33:00
INFO 2020-07-30 06:14:38,221Z lrauvNc4ToNetcdf.py createSeries():240 longitude:   18 v_t values found before 2014-09-18 17:53:00 and after 2014-09-18 19:33:00
INFO 2020-07-30 06:14:38,338Z lrauvNc4ToNetcdf.py createSeries():240 depth    :   47 v_t values found before 2014-09-18 17:53:00 and after 2014-09-18 19:33:00
INFO 2020-07-30 06:14:38,492Z lrauvNc4ToNetcdf.py createSeries():240 time     :   46 v_t values found before 2014-09-18 17:53:00 and after 2014-09-18 19:33:00
INFO 2020-07-30 06:14:38,644Z lrauvNc4ToNetcdf.py createSeries():240 latitude :   18 v_t values found before 2014-09-18 17:53:00 and after 2014-09-18 19:33:00
INFO 2020-07-30 06:14:38,758Z lrauvNc4ToNetcdf.py createSeries():240 longitude:   18 v_t values found before 2014-09-18 17:53:00 and after 2014-09-18 19:33:00
INFO 2020-07-30 06:14:38,873Z lrauvNc4ToNetcdf.py createSeries():240 depth    :   47 v_t values found before 2014-09-18 17:53:00 and after 2014-09-18 19:33:00
INFO 2020-07-30 06:14:39,024Z lrauvNc4ToNetcdf.py createSeries():240 time     :   46 v_t values found before 2014-09-18 17:53:00 and after 2014-09-18 19:33:00
WARNING 2020-07-30 06:14:39,164Z lrauvNc4ToNetcdf.py processResampleNc4File():1017 Dropping from depth repeated/decreasing values at indices: [  96  259  260  850 5011]
WARNING 2020-07-30 06:14:39,166Z lrauvNc4ToNetcdf.py processResampleNc4File():1017 Dropping from time repeated/decreasing values at indices: [  94  257  258  848 5009]
INFO 2020-07-30 06:14:39,167Z lrauvNc4ToNetcdf.py processResampleNc4File():1021 Creating t variable of the time indexes
INFO 2020-07-30 06:14:39,182Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources
INFO 2020-07-30 06:14:39,184Z lrauvNc4ToNetcdf.py createSeries():240 longitude:   47 v_t values found before 2014-09-18 17:53:00 and after 2014-09-18 19:33:00
INFO 2020-07-30 06:14:39,311Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2020-07-30 06:14:39,313Z lrauvNc4ToNetcdf.py createSeries():240 latitude :   47 v_t values found before 2014-09-18 17:53:00 and after 2014-09-18 19:33:00
INFO 2020-07-30 06:14:39,440Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2020-07-30 06:14:39,441Z lrauvNc4ToNetcdf.py createSeries():240 depth    :   47 v_t values found before 2014-09-18 17:53:00 and after 2014-09-18 19:33:00
INFO 2020-07-30 06:14:39,570Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
INFO 2020-07-30 06:14:39,649Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen
INFO 2020-07-30 06:14:40,008Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group CTD_NeilBrown parameter sea_water_salinity renaming to salinity
INFO 2020-07-30 06:14:40,366Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group CTD_NeilBrown parameter sea_water_temperature renaming to temperature
INFO 2020-07-30 06:14:40,368Z lrauvNc4ToNetcdf.py createSeries():240 downwelling_photosynthetic_photon_flux_in_sea_water:   46 v_t values found before 2014-09-18 17:53:00 and after 2014-09-18 19:33:00
INFO 2020-07-30 06:14:40,498Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
INFO 2020-07-30 06:14:41,286Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-07-30 06:14:42,073Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470
INFO 2020-07-30 06:14:42,858Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650
INFO 2020-07-30 06:14:42,860Z lrauvNc4ToNetcdf.py createSeries():240 time_fix :    1 v_t values found before 2014-09-18 17:53:00 and after 2014-09-18 19:33:00
INFO 2020-07-30 06:14:42,866Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2020-07-30 06:14:42,867Z lrauvNc4ToNetcdf.py createSeries():240 latitude_fix:    1 v_t values found before 2014-09-18 17:53:00 and after 2014-09-18 19:33:00
INFO 2020-07-30 06:14:42,873Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2020-07-30 06:14:42,874Z lrauvNc4ToNetcdf.py createSeries():240 longitude_fix:    1 v_t values found before 2014-09-18 17:53:00 and after 2014-09-18 19:33:00
INFO 2020-07-30 06:14:42,880Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
INFO 2020-07-30 06:14:42,886Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group Onboard parameter platform_average_current renaming to health_platform_average_current
INFO 2020-07-30 06:14:42,918Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2020-07-30 06:14:42,936Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2020-07-30 06:14:42,943Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2020-07-30 06:14:42,979Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2020-07-30 06:14:43,126Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2020-07-30 06:14:43,141Z lrauvNc4ToNetcdf.py createSeries():240 platform_pitch_angle:   47 v_t values found before 2014-09-18 17:53:00 and after 2014-09-18 19:33:00
INFO 2020-07-30 06:14:43,294Z lrauvNc4ToNetcdf.py createNav():505 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-07-30 06:14:43,308Z lrauvNc4ToNetcdf.py createSeries():240 platform_roll_angle:   47 v_t values found before 2014-09-18 17:53:00 and after 2014-09-18 19:33:00
INFO 2020-07-30 06:14:43,459Z lrauvNc4ToNetcdf.py createNav():505 platform_roll_angle -> roll: {'units': 'arcdeg', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-07-30 06:14:43,474Z lrauvNc4ToNetcdf.py createSeries():240 platform_orientation:   47 v_t values found before 2014-09-18 17:53:00 and after 2014-09-18 19:33:00
INFO 2020-07-30 06:14:43,626Z lrauvNc4ToNetcdf.py createNav():505 platform_orientation -> yaw: {'units': 'n/a', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-07-30 06:14:43,627Z lrauvNc4ToNetcdf.py nudge_coords():625 /mbari/LRAUV/daphne/missionlogs/2014/20140917_20140922/20140918T175253/201409181753_201409181933.nc4
INFO 2020-07-30 06:14:43,909Z lrauvNc4ToNetcdf.py nudge_coords():643 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2020-07-30 06:14:43,910Z lrauvNc4ToNetcdf.py nudge_coords():660                  -            -            -         1      0.00              -              -                             -
INFO 2020-07-30 06:14:43,912Z lrauvNc4ToNetcdf.py nudge_coords():686    0:        1.230    0.0000000    0.0000000         1      0.00            nan            nan 2014-09-18 17:55:04.011264086
WARNING 2020-07-30 06:14:43,917Z lrauvNc4ToNetcdf.py nudge_coords():674 end_sec_diff (435.738317012) > max_sec_diff_at_end (10)
INFO 2020-07-30 06:14:43,918Z lrauvNc4ToNetcdf.py nudge_coords():686    2:      435.738   -0.0001963    0.0003428         1      0.00            inf            inf 2014-09-18 17:56:12.029695988
INFO 2020-07-30 06:14:43,923Z lrauvNc4ToNetcdf.py nudge_coords():686    3:        0.783    0.0000000    0.0000000         2      1.08           0.00           0.00 2014-09-18 18:04:33.010240078
INFO 2020-07-30 06:14:43,928Z lrauvNc4ToNetcdf.py nudge_coords():686    5:        0.469    0.0021086    0.0019142      2195     36.12           5.90           9.82 2014-09-18 18:42:01.414505959
INFO 2020-07-30 06:14:43,933Z lrauvNc4ToNetcdf.py nudge_coords():686    6:        0.489    0.0000000    0.0000000         2      1.48           0.00           0.00 2014-09-18 18:43:31.010240078
INFO 2020-07-30 06:14:43,938Z lrauvNc4ToNetcdf.py nudge_coords():686    7:        0.420    0.0026995    0.0018027      3997     37.84           5.35           8.83 2014-09-18 19:21:33.106390953
INFO 2020-07-30 06:14:43,943Z lrauvNc4ToNetcdf.py nudge_coords():686    8:        0.204    0.0000000    0.0000000         2      0.43           0.00           0.00 2014-09-18 19:22:01.011264086
INFO 2020-07-30 06:14:43,948Z lrauvNc4ToNetcdf.py nudge_coords():686    9:        0.410    0.0000000    0.0000000       615      9.93           0.00           0.00 2014-09-18 19:33:03.011264086
INFO 2020-07-30 06:14:43,953Z lrauvNc4ToNetcdf.py nudge_coords():716    9:            -            -            -        10      0.07              -              -
INFO 2020-07-30 06:14:43,953Z lrauvNc4ToNetcdf.py nudge_coords():720 Points in final series = 6826
INFO 2020-07-30 06:14:43,966Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():549 http://odss.mbari.org/trackingdb/position/daphne_ac/between/20140918T165301/20140918T203324/data.csv
INFO 2020-07-30 06:14:43,997Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():572 Found 0 position values from the Tracking database
INFO 2020-07-30 06:14:44,000Z lrauvNc4ToNetcdf.py processResampleNc4File():1152 ['fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'oxygen', 'salinity', 'temperature', 'PAR', 'chlorophyll', 'bbp470', 'bbp650', 'fix_time', 'fix_latitude', 'fix_longitude', 'health_platform_average_current', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2020-07-30 06:14:44,326Z lrauvNc4ToNetcdf.py processResampleNc4File():1155 Wrote /mbari/LRAUV/daphne/missionlogs/2014/20140917_20140922/20140918T175253/201409181753_201409181933_2S_scieng.nc