INFO 2025-10-21 20:51:51,181 process.py process_mission():429 [1] commandline = /src/data/process_i2map.py -v --noinput --start_year 2024 --end_year 2024 --start_yd 235 --end_yd 365 --num_cores 1 --clobber INFO 2025-10-21 20:51:51,182 process.py process_mission():449 [1] Processing i2map mission 2024.324.00 by user docker_user on host c10f68273022 INFO 2025-10-21 20:51:51,182 process.py download_process():165 [1] Download and processing steps for 2024.324.00 INFO 2025-10-21 20:51:51,182 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/M3/master/i2MAP/2024/11/20241119/2024.324.00 INFO 2025-10-21 20:51:51,182 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/M3/master/i2MAP/2024/11/20241119/2024.324.00 to /data/auv_data/i2map/missionlogs/2024.324.00 INFO 2025-10-21 20:51:53,675 logs2netcdfs.py download_process_logs():779 [1] Processing mission: i2map 2024.324.00 INFO 2025-10-21 20:51:53,675 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2024.324.00/gps.log (962060 bytes) INFO 2025-10-21 20:51:53,781 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2024.324.00/navigation.log (180567616 bytes) INFO 2025-10-21 20:52:07,681 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2024.324.00/parosci.log (44479286 bytes) INFO 2025-10-21 20:52:11,389 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2024.324.00/seabird25p.log (89307250 bytes) INFO 2025-10-21 20:52:17,565 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2024.324.00/seabird25p.log: [1] INFO 2025-10-21 20:52:17,899 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2024.324.00/tailCone.log (22347927 bytes) INFO 2025-10-21 20:52:20,794 logs2netcdfs.py download_process_logs():807 [1] Time to process: 27.12 seconds INFO 2025-10-21 20:52:20,795 process.py calibrate():227 [1] Calibration steps for 2024.324.00 INFO 2025-10-21 20:52:21,324 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-10-21 20:52:21,327 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-10-21 20:52:23,616 calibrate.py _nudge_pos():1806 [1] 247: 0.040 -0.0004710 -0.0003178 35588 118.62 -0.590 -0.496 2024-11-19T18:03:21.374590720 INFO 2025-10-21 20:52:24,534 calibrate.py _nudge_pos():1806 [1] 331: 0.060 0.0003923 0.0001562 1545 5.15 11.324 5.622 2024-11-19T18:09:53.367737344 INFO 2025-10-21 20:52:25,085 calibrate.py _nudge_pos():1806 [1] 380: 0.090 0.0003737 -0.0006786 41468 138.22 0.402 -0.910 2024-11-19T20:28:54.966298624 INFO 2025-10-21 20:52:26,782 calibrate.py _nudge_pos():1806 [1] 537: 0.140 -0.0002549 -0.0003389 3050 10.16 -3.726 -6.180 2024-11-19T20:41:40.973823488 INFO 2025-10-21 20:52:27,810 calibrate.py _nudge_pos():1806 [1] 633: 0.160 0.0000077 -0.0002945 2020 6.73 0.170 -8.108 2024-11-19T20:49:59.969639936 INFO 2025-10-21 20:52:29,144 calibrate.py _nudge_pos():1806 [1] 756: 0.170 0.0001131 -0.0003595 2025 6.75 2.490 -9.874 2024-11-19T20:58:46.973537792 INFO 2025-10-21 20:52:29,983 calibrate.py _nudge_pos():1806 [1] 834: 0.130 -0.0010810 -0.0007095 35622 118.74 -1.353 -1.107 2024-11-19T22:58:48.570194688 INFO 2025-10-21 20:52:30,783 calibrate.py _nudge_pos():1806 [1] 907: 0.140 0.0002852 -0.0000650 1905 6.35 6.677 -1.898 2024-11-19T23:06:21.569162240 INFO 2025-10-21 20:52:31,510 calibrate.py _nudge_pos():1806 [1] 973: 0.160 0.0034677 -0.0006790 41138 137.12 3.757 -0.918 2024-11-20T01:24:34.171079936 INFO 2025-10-21 20:52:32,742 calibrate.py _nudge_pos():1806 [1] 1083: 0.200 0.0000638 -0.0002257 2405 8.01 1.183 -5.219 2024-11-20T01:34:24.170662144 INFO 2025-10-21 20:52:33,571 calibrate.py _nudge_pos():1806 [1] 1156: 0.030 0.0001289 -0.0004143 2125 7.08 2.705 -10.843 2024-11-20T01:42:41.366601984 INFO 2025-10-21 20:52:34,599 calibrate.py _nudge_pos():1806 [1] 1246: 0.070 0.0009858 -0.0005394 1560 5.20 28.185 -19.232 2024-11-20T01:49:22.369131264 INFO 2025-10-21 20:52:35,640 calibrate.py _nudge_pos():1806 [1] 1339: 0.120 -0.0008700 -0.0019779 18341 61.13 -2.114 -5.995 2024-11-20T02:52:02.571539968 INFO 2025-10-21 20:52:37,180 calibrate.py _nudge_pos():1806 [1] 1476: 0.150 -0.0006999 -0.0022914 14276 47.58 -2.186 -8.923 2024-11-20T03:41:53.766628864 INFO 2025-10-21 20:52:38,720 calibrate.py _nudge_pos():1806 [1] 1611: 0.200 -0.0000977 -0.0001088 315 1.05 -13.868 -19.264 2024-11-20T03:45:10.773133056 INFO 2025-10-21 20:52:39,595 calibrate.py _nudge_pos():1806 [1] 1688: 0.060 0.0001335 -0.0013261 5796 19.32 1.027 -12.721 2024-11-20T04:05:45.968516352 INFO 2025-10-21 20:52:39,955 calibrate.py _nudge_pos():1806 [1] 1720: 0.060 0.0000125 0.0000526 75 0.25 7.511 39.458 2024-11-20T04:06:31.975364608 INFO 2025-10-21 20:52:40,092 calibrate.py _nudge_pos():1806 [1] 1732: 0.060 -0.0001664 -0.0001110 310 1.03 -24.002 -19.977 2024-11-20T04:07:44.970364416 INFO 2025-10-21 20:52:40,791 calibrate.py _nudge_pos():1806 [1] 1793: 0.110 -0.0000278 -0.0002484 2150 7.16 -0.576 -6.426 2024-11-20T04:15:54.966797056 INFO 2025-10-21 20:52:41,929 calibrate.py _nudge_pos():1806 [1] 1891: 0.130 0.0001850 -0.0002423 1400 4.66 5.893 -9.626 2024-11-20T04:22:11.970970624 INFO 2025-10-21 20:52:42,703 calibrate.py _nudge_pos():1806 [1] 1957: 0.160 0.0002042 -0.0004460 1900 6.33 4.792 -13.055 2024-11-20T04:29:36.970486272 INFO 2025-10-21 20:52:43,912 calibrate.py _nudge_pos():1806 [1] 2055: 0.200 0.0001478 -0.0007124 2010 6.70 3.279 -19.713 2024-11-20T04:37:55.966302464 INFO 2025-10-21 20:52:53,289 calibrate.py _nudge_pos():1806 [1] 2839: 0.100 0.0000545 -0.0005308 1725 5.75 1.410 -17.117 2024-11-20T04:56:44.169015296 INFO 2025-10-21 20:52:53,694 calibrate.py _nudge_pos():1806 [1] 2873: 0.120 -0.0000424 -0.0004114 1770 5.90 -1.069 -12.928 2024-11-20T05:03:11.172503808 INFO 2025-10-21 20:52:54,567 calibrate.py _nudge_pos():1806 [1] 2948: 0.060 -0.0023417 -0.0044590 35768 119.22 -2.918 -6.930 2024-11-20T07:03:38.767379456 INFO 2025-10-21 20:52:55,693 calibrate.py _nudge_pos():1806 [1] 3043: 0.100 0.0004795 -0.0007044 2960 9.86 7.223 -13.234 2024-11-20T07:15:05.770316544 INFO 2025-10-21 20:52:56,069 calibrate.py _nudge_pos():1806 [1] 3075: 0.060 0.0000523 -0.0001112 55 0.18 43.157 -114.516 2024-11-20T07:15:47.767439616 INFO 2025-10-21 20:52:56,081 calibrate.py _nudge_pos():1806 [1] 3076: 0.060 -0.0000910 -0.0000928 15 0.05 -289.707 -368.328 2024-11-20T07:15:50.767234048 INFO 2025-10-21 20:52:56,106 calibrate.py _nudge_pos():1806 [1] 3078: 0.070 0.0017057 -0.0012887 41438 138.12 1.835 -1.729 2024-11-20T09:33:59.369425920 INFO 2025-10-21 20:53:04,322 calibrate.py _nudge_pos():1806 [1] 3768: 0.120 0.0029891 -0.0016713 13981 46.60 9.529 -6.646 2024-11-20T10:32:04.570673408 INFO 2025-10-21 20:53:08,906 calibrate.py _nudge_pos():1806 [1] 4150: 0.140 0.0039115 -0.0024349 13981 46.60 12.467 -9.682 2024-11-20T11:25:01.773019904 INFO 2025-10-21 20:53:14,257 calibrate.py _nudge_pos():1806 [1] 4570: 0.200 0.0040274 -0.0017964 13955 46.51 12.858 -7.156 2024-11-20T12:18:31.973106432 INFO 2025-10-21 20:53:20,653 calibrate.py _nudge_pos():1806 [1] 5097: 0.050 0.0047580 -0.0017644 13961 46.53 15.182 -7.026 2024-11-20T13:13:50.365780736 INFO 2025-10-21 20:53:25,552 calibrate.py _nudge_pos():1806 [1] 5498: 0.060 0.0048382 -0.0021586 13996 46.65 15.396 -8.574 2024-11-20T14:07:09.566620672 INFO 2025-10-21 20:53:43,533 calibrate.py _nudge_pos():1806 [1] 6985: 0.110 0.0035131 -0.0001252 10146 33.82 15.418 -0.686 2024-11-20T15:05:44.765812992 INFO 2025-10-21 20:53:58,741 calibrate.py _nudge_pos():1806 [1] 8223: 0.200 0.0045097 -0.0003401 12885 42.95 15.580 -1.467 2024-11-20T16:09:18.974521856 INFO 2025-10-21 20:54:20,348 calibrate.py _nudge_pos():1806 [1] 9973: 0.190 0.0000041 -0.0001314 3060 10.20 0.059 -2.387 2024-11-20T16:48:40.172768512 INFO 2025-10-21 20:54:42,194 calibrate.py _nudge_pos():1806 [1] 11721: 0.100 0.0003612 -0.0001153 2330 7.76 6.902 -2.753 2024-11-20T17:25:33.371154176 INFO 2025-10-21 20:55:02,526 calibrate.py _nudge_pos():1862 [1] 13300: - - - 4 0.01 - - INFO 2025-10-21 20:55:02,526 calibrate.py _nudge_pos():1868 [1] Points in final series = 464635 INFO 2025-10-21 20:55:43,254 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 103 on port side INFO 2025-10-21 20:55:43,255 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "103" INFO 2025-10-21 20:55:43,504 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2010-2008 2011_Feb 2012_Feb 2013_Apr 2013_Aug 2014_Sep 2015_Aug 2019_Oct 2021_Apr 2024_Jun WARNING 2025-10-21 20:55:43,509 calibrate.py _cal_date_xml_files():1081 [1] Found 17 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2010-2008 INFO 2025-10-21 20:55:43,509 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 20:55:43,510 calibrate.py _cal_date_xml_files():1116 [1] Cannot parse CalibrationDate, 16-Feb-11p INFO 2025-10-21 20:55:43,510 calibrate.py _cal_date_xml_files():1123 [1] Trying to parse CalibrationDate without 'p' WARNING 2025-10-21 20:55:43,514 calibrate.py _cal_date_xml_files():1081 [1] Found 14 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2011_Feb INFO 2025-10-21 20:55:43,514 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 20:55:43,515 calibrate.py _cal_date_xml_files():1116 [1] Cannot parse CalibrationDate, 16-Feb-11p INFO 2025-10-21 20:55:43,515 calibrate.py _cal_date_xml_files():1123 [1] Trying to parse CalibrationDate without 'p' WARNING 2025-10-21 20:55:43,520 calibrate.py _cal_date_xml_files():1081 [1] Found 14 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2012_Feb INFO 2025-10-21 20:55:43,520 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 20:55:43,520 calibrate.py _cal_date_xml_files():1116 [1] Cannot parse CalibrationDate, 16-Feb-11p INFO 2025-10-21 20:55:43,520 calibrate.py _cal_date_xml_files():1123 [1] Trying to parse CalibrationDate without 'p' WARNING 2025-10-21 20:55:43,525 calibrate.py _cal_date_xml_files():1081 [1] Found 14 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2013_Apr INFO 2025-10-21 20:55:43,525 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 20:55:43,526 calibrate.py _cal_date_xml_files():1116 [1] Cannot parse CalibrationDate, 16-Feb-11p INFO 2025-10-21 20:55:43,526 calibrate.py _cal_date_xml_files():1123 [1] Trying to parse CalibrationDate without 'p' WARNING 2025-10-21 20:55:43,532 calibrate.py _cal_date_xml_files():1081 [1] Found 14 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2013_Aug INFO 2025-10-21 20:55:43,532 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 20:55:43,532 calibrate.py _cal_date_xml_files():1116 [1] Cannot parse CalibrationDate, 16-Feb-11p INFO 2025-10-21 20:55:43,532 calibrate.py _cal_date_xml_files():1123 [1] Trying to parse CalibrationDate without 'p' WARNING 2025-10-21 20:55:43,537 calibrate.py _cal_date_xml_files():1081 [1] Found 14 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2014_Sep INFO 2025-10-21 20:55:43,537 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 20:55:43,538 calibrate.py _cal_date_xml_files():1116 [1] Cannot parse CalibrationDate, 16-Feb-11p INFO 2025-10-21 20:55:43,538 calibrate.py _cal_date_xml_files():1123 [1] Trying to parse CalibrationDate without 'p' WARNING 2025-10-21 20:55:43,543 calibrate.py _cal_date_xml_files():1081 [1] Found 14 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2015_Aug INFO 2025-10-21 20:55:43,543 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 20:55:43,544 calibrate.py _cal_date_xml_files():1116 [1] Cannot parse CalibrationDate, 16-Feb-11p INFO 2025-10-21 20:55:43,544 calibrate.py _cal_date_xml_files():1123 [1] Trying to parse CalibrationDate without 'p' WARNING 2025-10-21 20:55:43,549 calibrate.py _cal_date_xml_files():1081 [1] Found 14 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2019_Oct INFO 2025-10-21 20:55:43,549 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 20:55:43,550 calibrate.py _cal_date_xml_files():1116 [1] Cannot parse CalibrationDate, 16-Feb-11p INFO 2025-10-21 20:55:43,550 calibrate.py _cal_date_xml_files():1123 [1] Trying to parse CalibrationDate without 'p' WARNING 2025-10-21 20:55:43,555 calibrate.py _cal_date_xml_files():1081 [1] Found 14 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2021_Apr INFO 2025-10-21 20:55:43,555 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 20:55:43,556 calibrate.py _cal_date_xml_files():1116 [1] Cannot parse CalibrationDate, 16-Feb-11p INFO 2025-10-21 20:55:43,556 calibrate.py _cal_date_xml_files():1123 [1] Trying to parse CalibrationDate without 'p' WARNING 2025-10-21 20:55:43,561 calibrate.py _cal_date_xml_files():1081 [1] Found 14 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2024_Jun INFO 2025-10-21 20:55:43,561 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 20:55:43,562 calibrate.py _cal_date_xml_files():1116 [1] Cannot parse CalibrationDate, 16-Feb-11p INFO 2025-10-21 20:55:43,562 calibrate.py _cal_date_xml_files():1123 [1] Trying to parse CalibrationDate without 'p' INFO 2025-10-21 20:55:43,568 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2011_Feb/Oxygen_SBE43_0103.XML has CalibrationDate 2011-02-16 00:00:00+00:00 INFO 2025-10-21 20:55:43,568 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2011_Feb/Oxygen_SBE43_0103.XML is just before 2024.324.00 with mission_start=2024-11-19T16:01:09.986825216 INFO 2025-10-21 20:55:56,893 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_port: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2011_Feb/Oxygen_SBE43_0103.XML file: {'Soc': 0.4598, 'offset': -0.539, 'A': -0.0030238, 'B': 0.00015619, 'C': -2.652e-06, 'D0': 2.5826, 'D1': 0.00019263, 'D2': -0.04648, 'E': 0.036, 'Tau20': 1.83, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 20:55:56,901 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 143 on stbd side INFO 2025-10-21 20:55:56,902 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "143" INFO 2025-10-21 20:55:57,078 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2011_June 2012_Oct 2013-Dec 2013_July 2015-Oct 2017_Mar 2020_Feb 2023_Jan 2024_Jan WARNING 2025-10-21 20:55:57,083 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2011_June INFO 2025-10-21 20:55:57,084 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 20:55:57,089 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2012_Oct INFO 2025-10-21 20:55:57,089 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 20:55:57,094 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013-Dec INFO 2025-10-21 20:55:57,094 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 20:55:57,099 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July INFO 2025-10-21 20:55:57,100 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 20:55:57,104 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2015-Oct INFO 2025-10-21 20:55:57,104 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 20:55:57,109 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2017_Mar INFO 2025-10-21 20:55:57,109 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 20:55:57,114 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2020_Feb INFO 2025-10-21 20:55:57,114 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 20:55:57,119 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2023_Jan INFO 2025-10-21 20:55:57,119 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 20:55:57,124 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2024_Jan INFO 2025-10-21 20:55:57,124 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 20:55:57,130 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July/Oxygen_SBE43_0143.XML has CalibrationDate 2013-07-17 00:00:00+00:00 INFO 2025-10-21 20:55:57,130 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July/Oxygen_SBE43_0143.XML is just before 2024.324.00 with mission_start=2024-11-19T16:01:09.986825216 INFO 2025-10-21 20:56:10,523 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_stbd: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July/Oxygen_SBE43_0143.XML file: {'Soc': 0.42815, 'offset': -0.4829, 'A': -0.0031081, 'B': 0.0001985, 'C': -3.3814e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.28, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 20:56:29,135 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-10-21 20:56:34,314 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-10-21 20:56:34,322 calibrate.py _ctd_process():2919 [1] Performing range checking of ['seabird25p_salinity'] in 2024.324.00/seabird25p.nc WARNING 2025-10-21 20:56:34,326 calibrate.py _range_qc_combined_nc():890 [1] More than 500 (1738) seabird25p_salinity values found outside of range. This may indicate a problem with the seabird25p data. INFO 2025-10-21 20:56:34,326 calibrate.py _range_qc_combined_nc():898 [1] Setting 1738 seabird25p_salinity values to NaN INFO 2025-10-21 20:56:34,326 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('seabird25p_salinity', Range(min=30, max=40))] INFO 2025-10-21 20:56:34,326 calibrate.py _range_qc_combined_nc():936 [1] Done range checking seabird25p INFO 2025-10-21 20:56:34,758 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/i2map/missionnetcdfs/2024.324.00/i2map_2024.324.00_cal.nc INFO 2025-10-21 20:57:27,073 calibrate.py write_netcdf():3512 [1] Data variables written: depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_propRpm, tailcone_time, time INFO 2025-10-21 20:57:27,079 process.py align():251 [1] Alignment steps for 2024.324.00 INFO 2025-10-21 20:57:27,127 align.py process_cal():139 [1] Processing i2map_2024.324.00_cal.nc from /data/auv_data/i2map/missionnetcdfs/2024.324.00 INFO 2025-10-21 20:57:27,246 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 20:57:27,258 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 20:57:27,577 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 20:57:27,592 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 20:57:27,878 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 20:57:27,894 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 20:57:28,064 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-10-21 20:57:28,064 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-10-21 20:57:28,187 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 20:57:28,202 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 20:57:28,520 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.324.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 20:57:28,547 align.py process_cal():249 [1] seabird25p_temperature: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 20:57:28,954 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.324.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 20:57:28,981 align.py process_cal():249 [1] seabird25p_conductivity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 20:57:29,395 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.324.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 20:57:29,423 align.py process_cal():249 [1] seabird25p_salinity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 20:57:29,830 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.324.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 20:57:29,857 align.py process_cal():249 [1] seabird25p_temperature_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 20:57:30,266 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.324.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 20:57:30,295 align.py process_cal():249 [1] seabird25p_conductivity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 20:57:30,700 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.324.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 20:57:30,733 align.py process_cal():249 [1] seabird25p_salinity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 20:57:31,137 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.324.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 20:57:31,163 align.py process_cal():249 [1] seabird25p_dissolvedO2_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 20:57:31,589 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.324.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 20:57:31,615 align.py process_cal():249 [1] seabird25p_oxygen_mll_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 20:57:32,033 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.324.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 20:57:32,059 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 20:57:32,466 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.324.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 20:57:32,491 align.py process_cal():249 [1] seabird25p_dissolvedO2_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 20:57:33,087 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.324.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 20:57:33,118 align.py process_cal():249 [1] seabird25p_oxygen_mll_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 20:57:33,514 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.324.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 20:57:33,537 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 20:57:33,934 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.324.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 20:57:33,958 align.py process_cal():249 [1] seabird25p_beam_transmittance: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 20:57:34,364 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.324.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 20:57:34,385 align.py process_cal():249 [1] seabird25p_depth: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 20:57:34,825 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 20:57:35,007 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/i2map/missionnetcdfs/2024.324.00/i2map_2024.324.00_align.nc INFO 2025-10-21 20:57:35,176 align.py write_netcdf():342 [1] Data variables written: navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_latitude, seabird25p_longitude, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-10-21 20:57:35,178 process.py resample():273 [1] Resampling steps for 2024.324.00 INFO 2025-10-21 20:57:35,179 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-10-21 20:57:35,207 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2024.324.00/i2map_2024.324.00_align.nc mission netCDF file INFO 2025-10-21 20:57:35,216 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2024.324.00/i2map_2024.324.00_align.nc mission netCDF file INFO 2025-10-21 20:57:35,219 resample.py get_mission_start_end():1145 [1] navigation: 2024-11-19T16:01:28.325569024 to 2024-11-20T17:52:42.369560064 (0 days 00:00:00 before mission_end) INFO 2025-10-21 20:57:35,224 resample.py get_mission_start_end():1145 [1] seabird25p: 2024-11-19T16:01:09.986825216 to 2024-11-20T17:52:42.339562240 (0 days 00:00:00.029997824 before mission_end) INFO 2025-10-21 20:57:35,229 resample.py get_mission_start_end():1145 [1] tailcone : 2024-11-19T16:00:47.768347136 to 2024-11-20T17:52:42.359560704 (0 days 00:00:00.009999360 before mission_end) INFO 2025-10-21 20:57:35,230 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2024.324.00/i2map_2024.324.00_align.nc mission netCDF file INFO 2025-10-21 20:57:35,230 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-10-21 20:57:36,453 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-10-21 20:57:36,597 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-10-21 20:57:36,737 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-10-21 20:57:36,871 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-10-21 20:57:37,076 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature with frequency 1S following 3 point median filter INFO 2025-10-21 20:57:37,286 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity with frequency 1S following 3 point median filter INFO 2025-10-21 20:57:37,516 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity with frequency 1S following 3 point median filter INFO 2025-10-21 20:57:37,725 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 20:57:37,939 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 20:57:38,161 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 20:57:38,387 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_port with frequency 1S following 3 point median filter INFO 2025-10-21 20:57:38,617 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_port with frequency 1S following 3 point median filter INFO 2025-10-21 20:57:38,849 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_port with frequency 1S following 3 point median filter INFO 2025-10-21 20:57:39,082 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 20:57:39,315 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 20:57:39,551 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 20:57:39,784 resample.py resample_variable():1031 [1] Resampling seabird25p_beam_transmittance with frequency 1S following 3 point median filter INFO 2025-10-21 20:57:39,930 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-10-21 20:57:40,501 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/i2map/missionnetcdfs/2024.324.00/i2map_2024.324.00_1S.nc INFO 2025-10-21 20:57:40,504 process.py archive():337 [1] Archiving steps for 2024.324.00 INFO 2025-10-21 20:57:40,505 process.py archive():347 [1] nc_file_base = /data/auv_data/i2map/missionnetcdfs/2024.324.00/i2map_2024.324.00, BASE_PATH = /data/auv_data INFO 2025-10-21 20:57:40,506 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/i2map/missionnetcdfs/2024.324.00/i2map_2024.324.00 files to /Volumes/AUVCTD/surveys/2024/netcdf INFO 2025-10-21 20:57:40,507 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2024/netcdf/i2map_2024.324.00_1S.nc INFO 2025-10-21 20:57:40,553 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2024.324.00/i2map_2024.324.00_1S.nc /Volumes/AUVCTD/surveys/2024/netcdf done. INFO 2025-10-21 20:57:40,554 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2024/netcdf/i2map_2024.324.00_cal.nc INFO 2025-10-21 20:57:40,940 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2024.324.00/i2map_2024.324.00_cal.nc /Volumes/AUVCTD/surveys/2024/netcdf done. INFO 2025-10-21 20:57:40,941 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2024/netcdf/i2map_2024.324.00_align.nc INFO 2025-10-21 20:57:41,289 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2024.324.00/i2map_2024.324.00_align.nc /Volumes/AUVCTD/surveys/2024/netcdf done. INFO 2025-10-21 20:57:41,302 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2024.324.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2024/2024324/2024.324.00 done. INFO 2025-10-21 20:57:41,777 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2024.324.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2024/2024324/2024.324.00 done. INFO 2025-10-21 20:57:41,915 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2024.324.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2024/2024324/2024.324.00 done. INFO 2025-10-21 20:57:42,162 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2024.324.00/seabird25p.nc /Volumes/AUVCTD/missionnetcdfs/2024/2024324/2024.324.00 done. INFO 2025-10-21 20:57:42,259 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2024.324.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2024/2024324/2024.324.00 done. INFO 2025-10-21 20:57:42,259 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-10-21 20:57:42,260 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2024.324.00/i2map_2024.324.00_processing.log /Volumes/AUVCTD/surveys/2024/netcdf