INFO 2025-10-21 20:41:13,147 process.py process_mission():429 [1] commandline = /src/data/process_i2map.py -v --noinput --start_year 2024 --end_year 2024 --start_yd 235 --end_yd 365 --num_cores 1 --clobber INFO 2025-10-21 20:41:13,147 process.py process_mission():449 [1] Processing i2map mission 2024.260.01 by user docker_user on host c10f68273022 INFO 2025-10-21 20:41:13,148 process.py download_process():165 [1] Download and processing steps for 2024.260.01 INFO 2025-10-21 20:41:13,148 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/M3/master/i2MAP/2024/09/20240916/2024.260.01 INFO 2025-10-21 20:41:13,148 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/M3/master/i2MAP/2024/09/20240916/2024.260.01 to /data/auv_data/i2map/missionlogs/2024.260.01 INFO 2025-10-21 20:41:15,890 logs2netcdfs.py download_process_logs():779 [1] Processing mission: i2map 2024.260.01 INFO 2025-10-21 20:41:15,891 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2024.260.01/gps.log (593996 bytes) INFO 2025-10-21 20:41:16,016 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2024.260.01/navigation.log (199626564 bytes) INFO 2025-10-21 20:41:32,271 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2024.260.01/parosci.log (49172678 bytes) INFO 2025-10-21 20:41:36,324 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2024.260.01/seabird25p.log (98683330 bytes) INFO 2025-10-21 20:41:43,007 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2024.260.01/seabird25p.log: [ 1 810054] INFO 2025-10-21 20:41:43,376 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2024.260.01/tailCone.log (24706023 bytes) INFO 2025-10-21 20:41:46,675 logs2netcdfs.py download_process_logs():807 [1] Time to process: 30.78 seconds INFO 2025-10-21 20:41:46,676 process.py calibrate():227 [1] Calibration steps for 2024.260.01 INFO 2025-10-21 20:41:47,376 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-10-21 20:41:47,379 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-10-21 20:41:48,683 calibrate.py _nudge_pos():1806 [1] 157: 0.050 -0.0022256 0.0012359 18596 61.98 -5.331 3.695 2024-09-16T17:07:40.301356544 INFO 2025-10-21 20:41:50,470 calibrate.py _nudge_pos():1806 [1] 313: 0.130 0.0007331 0.0033033 18576 61.92 1.758 9.886 2024-09-16T18:12:10.496230144 INFO 2025-10-21 20:41:51,889 calibrate.py _nudge_pos():1806 [1] 439: 0.200 0.0043300 0.0022572 18591 61.97 10.377 6.750 2024-09-16T19:16:14.702883840 INFO 2025-10-21 20:41:53,133 calibrate.py _nudge_pos():1806 [1] 553: 0.080 0.0035731 0.0050166 18525 61.75 8.594 15.054 2024-09-16T20:19:53.101305600 INFO 2025-10-21 20:41:54,619 calibrate.py _nudge_pos():1806 [1] 686: 0.160 0.0037099 0.0059128 18481 61.60 8.947 17.787 2024-09-16T21:23:41.299056384 INFO 2025-10-21 20:41:56,283 calibrate.py _nudge_pos():1806 [1] 837: 0.150 0.0031534 0.0021282 11646 38.82 12.070 10.159 2024-09-16T22:05:00.499219456 INFO 2025-10-21 20:41:58,319 calibrate.py _nudge_pos():1806 [1] 1020: 0.180 0.0008416 0.0003259 2340 7.80 16.039 7.746 2024-09-16T22:15:50.494691584 INFO 2025-10-21 20:42:00,889 calibrate.py _nudge_pos():1806 [1] 1249: 0.200 0.0052469 0.0041677 41261 137.54 5.668 5.615 2024-09-17T00:37:11.093730816 INFO 2025-10-21 20:42:03,798 calibrate.py _nudge_pos():1806 [1] 1507: 0.130 0.0023512 0.0009982 5965 19.88 17.572 9.304 2024-09-17T01:01:21.294385152 INFO 2025-10-21 20:42:04,403 calibrate.py _nudge_pos():1806 [1] 1560: 0.190 0.0056476 -0.0009822 56778 189.26 4.434 -0.962 2024-09-17T04:11:29.102896896 INFO 2025-10-21 20:42:05,140 calibrate.py _nudge_pos():1806 [1] 1622: 0.180 -0.0000607 -0.0000220 1750 5.83 -1.546 -0.700 2024-09-17T04:18:20.094742016 INFO 2025-10-21 20:42:05,893 calibrate.py _nudge_pos():1806 [1] 1686: 0.200 0.0002280 0.0003089 2595 8.65 3.917 6.620 2024-09-17T04:28:02.094872320 INFO 2025-10-21 20:42:06,584 calibrate.py _nudge_pos():1806 [1] 1746: 0.040 0.0002052 0.0002773 2360 7.86 3.877 6.536 2024-09-17T04:36:53.298482432 INFO 2025-10-21 20:42:07,097 calibrate.py _nudge_pos():1806 [1] 1790: 0.070 0.0032625 0.0035321 41827 139.42 3.476 4.694 2024-09-17T06:57:01.902453504 INFO 2025-10-21 20:42:29,363 calibrate.py _nudge_pos():1806 [1] 3644: 0.050 0.0008406 0.0002144 4841 16.13 7.741 2.463 2024-09-17T07:44:03.099188224 INFO 2025-10-21 20:42:30,413 calibrate.py _nudge_pos():1806 [1] 3734: 0.130 0.0003042 0.0003017 2800 9.33 4.844 5.993 2024-09-17T07:54:52.094728960 INFO 2025-10-21 20:42:31,417 calibrate.py _nudge_pos():1806 [1] 3821: 0.200 0.0031277 0.0033796 42692 142.31 3.265 4.401 2024-09-17T10:18:36.693903360 INFO 2025-10-21 20:42:34,229 calibrate.py _nudge_pos():1806 [1] 4059: 0.200 0.0003766 0.0004896 4160 13.86 4.036 6.544 2024-09-17T10:36:25.700671488 INFO 2025-10-21 20:42:34,820 calibrate.py _nudge_pos():1806 [1] 4109: 0.120 0.0036114 0.0016035 48359 161.19 3.329 1.843 2024-09-17T13:18:26.494751488 INFO 2025-10-21 20:42:37,327 calibrate.py _nudge_pos():1806 [1] 4316: 0.200 -0.0002868 0.0024155 18541 61.80 -0.689 7.243 2024-09-17T14:23:40.696610560 INFO 2025-10-21 20:42:42,991 calibrate.py _nudge_pos():1806 [1] 4769: 0.070 0.0025150 0.0027634 18521 61.73 6.050 8.295 2024-09-17T15:32:57.101876992 INFO 2025-10-21 20:42:45,639 calibrate.py _nudge_pos():1806 [1] 4983: 0.150 -0.0008727 0.0027532 18591 61.97 -2.091 8.233 2024-09-17T16:38:28.302571264 INFO 2025-10-21 20:42:47,479 calibrate.py _nudge_pos():1806 [1] 5130: 0.050 0.0020346 0.0029538 18585 61.95 4.875 8.836 2024-09-17T17:42:51.697910528 INFO 2025-10-21 20:42:49,217 calibrate.py _nudge_pos():1806 [1] 5268: 0.090 0.0028090 -0.0024502 18626 62.08 6.715 -7.313 2024-09-17T18:47:13.903331584 INFO 2025-10-21 20:42:51,111 calibrate.py _nudge_pos():1806 [1] 5413: 0.170 0.0011227 -0.0001728 18651 62.17 2.680 -0.515 2024-09-17T19:51:48.097931008 INFO 2025-10-21 20:43:27,704 calibrate.py _nudge_pos():1862 [1] 8190: - - - 3 0.01 - - INFO 2025-10-21 20:43:27,704 calibrate.py _nudge_pos():1868 [1] Points in final series = 514019 INFO 2025-10-21 20:44:12,916 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 2935 on port side INFO 2025-10-21 20:44:12,918 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "2935" INFO 2025-10-21 20:44:13,164 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2014_Nov 2021_Mar 2022_Apr WARNING 2025-10-21 20:44:13,169 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2014_Nov INFO 2025-10-21 20:44:13,169 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 20:44:13,173 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2021_Mar INFO 2025-10-21 20:44:13,173 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 20:44:13,178 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr INFO 2025-10-21 20:44:13,178 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 20:44:13,186 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml has CalibrationDate 2022-03-22 00:00:00+00:00 INFO 2025-10-21 20:44:13,186 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml is just before 2024.260.01 with mission_start=2024-09-16T16:04:27.271197184 INFO 2025-10-21 20:44:27,916 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_port: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml file: {'Soc': 0.42595, 'offset': -0.5339, 'A': -0.0041113, 'B': 0.00020802, 'C': -3.0027e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.09, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 20:44:27,927 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 3488 on stbd side INFO 2025-10-21 20:44:27,927 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "3488" INFO 2025-10-21 20:44:28,118 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2016_dec 2021_mar 2022_Jan WARNING 2025-10-21 20:44:28,122 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec INFO 2025-10-21 20:44:28,122 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 20:44:28,126 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2021_mar INFO 2025-10-21 20:44:28,127 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 20:44:28,131 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2022_Jan INFO 2025-10-21 20:44:28,131 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 20:44:28,138 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec/43-3488.xml has CalibrationDate 2016-12-16 00:00:00+00:00 INFO 2025-10-21 20:44:28,138 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec/43-3488.xml is just before 2024.260.01 with mission_start=2024-09-16T16:04:27.271197184 INFO 2025-10-21 20:44:43,008 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_stbd: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec/43-3488.xml file: {'Soc': 0.44664, 'offset': -0.507, 'A': -0.0030812, 'B': 7.8442e-05, 'C': -9.0601e-07, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.44, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 20:45:03,160 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 68 seconds, d_end_time_diff: -1 seconds INFO 2025-10-21 20:45:08,947 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 68 seconds, d_end_time_diff: -1 seconds INFO 2025-10-21 20:45:08,956 calibrate.py _ctd_process():2919 [1] Performing range checking of ['seabird25p_salinity'] in 2024.260.01/seabird25p.nc INFO 2025-10-21 20:45:08,959 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 seabird25p_salinity values to NaN INFO 2025-10-21 20:45:08,960 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('seabird25p_salinity', Range(min=30, max=40))] INFO 2025-10-21 20:45:08,960 calibrate.py _range_qc_combined_nc():936 [1] Done range checking seabird25p INFO 2025-10-21 20:45:09,354 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/i2map/missionnetcdfs/2024.260.01/i2map_2024.260.01_cal.nc INFO 2025-10-21 20:46:07,565 calibrate.py write_netcdf():3512 [1] Data variables written: depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_propRpm, tailcone_time, time INFO 2025-10-21 20:46:07,572 process.py align():251 [1] Alignment steps for 2024.260.01 INFO 2025-10-21 20:46:07,620 align.py process_cal():139 [1] Processing i2map_2024.260.01_cal.nc from /data/auv_data/i2map/missionnetcdfs/2024.260.01 INFO 2025-10-21 20:46:07,751 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 20:46:07,763 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 20:46:08,099 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 20:46:08,118 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 20:46:08,433 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 20:46:08,450 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 20:46:08,640 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-10-21 20:46:08,640 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-10-21 20:46:08,874 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 20:46:08,891 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 20:46:09,242 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.260.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 20:46:09,269 align.py process_cal():249 [1] seabird25p_temperature: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 20:46:09,729 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.260.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 20:46:09,759 align.py process_cal():249 [1] seabird25p_conductivity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 20:46:10,209 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.260.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 20:46:10,239 align.py process_cal():249 [1] seabird25p_salinity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 20:46:10,687 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.260.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 20:46:10,725 align.py process_cal():249 [1] seabird25p_temperature_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 20:46:11,170 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.260.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 20:46:11,199 align.py process_cal():249 [1] seabird25p_conductivity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 20:46:11,661 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.260.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 20:46:11,689 align.py process_cal():249 [1] seabird25p_salinity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 20:46:12,134 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.260.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 20:46:12,162 align.py process_cal():249 [1] seabird25p_dissolvedO2_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 20:46:12,602 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.260.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 20:46:12,630 align.py process_cal():249 [1] seabird25p_oxygen_mll_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 20:46:13,073 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.260.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 20:46:13,100 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 20:46:13,554 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.260.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 20:46:13,582 align.py process_cal():249 [1] seabird25p_dissolvedO2_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 20:46:14,029 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.260.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 20:46:14,056 align.py process_cal():249 [1] seabird25p_oxygen_mll_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 20:46:14,503 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.260.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 20:46:14,529 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 20:46:14,976 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.260.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 20:46:15,001 align.py process_cal():249 [1] seabird25p_beam_transmittance: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 20:46:15,445 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.260.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 20:46:15,477 align.py process_cal():249 [1] seabird25p_depth: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 20:46:15,969 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 20:46:16,171 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/i2map/missionnetcdfs/2024.260.01/i2map_2024.260.01_align.nc INFO 2025-10-21 20:46:16,362 align.py write_netcdf():342 [1] Data variables written: navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_latitude, seabird25p_longitude, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-10-21 20:46:16,367 process.py resample():273 [1] Resampling steps for 2024.260.01 INFO 2025-10-21 20:46:16,368 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-10-21 20:46:16,399 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2024.260.01/i2map_2024.260.01_align.nc mission netCDF file INFO 2025-10-21 20:46:16,410 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2024.260.01/i2map_2024.260.01_align.nc mission netCDF file INFO 2025-10-21 20:46:16,414 resample.py get_mission_start_end():1145 [1] navigation: 2024-09-16T16:03:53.743493888 to 2024-09-17T20:38:53.094405376 (0 days 00:00:00 before mission_end) INFO 2025-10-21 20:46:16,420 resample.py get_mission_start_end():1145 [1] seabird25p: 2024-09-16T16:04:27.271197184 to 2024-09-17T20:38:53.074406912 (0 days 00:00:00.019998464 before mission_end) INFO 2025-10-21 20:46:16,425 resample.py get_mission_start_end():1145 [1] tailcone : 2024-09-16T16:03:12.746302464 to 2024-09-17T20:38:52.944415744 (0 days 00:00:00.149989632 before mission_end) INFO 2025-10-21 20:46:16,426 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2024.260.01/i2map_2024.260.01_align.nc mission netCDF file INFO 2025-10-21 20:46:16,427 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-10-21 20:46:17,844 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-10-21 20:46:18,006 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-10-21 20:46:18,162 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-10-21 20:46:18,311 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-10-21 20:46:18,561 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature with frequency 1S following 3 point median filter INFO 2025-10-21 20:46:18,825 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity with frequency 1S following 3 point median filter INFO 2025-10-21 20:46:19,096 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity with frequency 1S following 3 point median filter INFO 2025-10-21 20:46:19,367 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 20:46:19,636 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 20:46:19,936 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 20:46:20,206 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_port with frequency 1S following 3 point median filter INFO 2025-10-21 20:46:20,477 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_port with frequency 1S following 3 point median filter INFO 2025-10-21 20:46:20,747 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_port with frequency 1S following 3 point median filter INFO 2025-10-21 20:46:21,018 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 20:46:21,285 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 20:46:21,554 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 20:46:21,823 resample.py resample_variable():1031 [1] Resampling seabird25p_beam_transmittance with frequency 1S following 3 point median filter INFO 2025-10-21 20:46:21,984 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-10-21 20:46:22,638 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/i2map/missionnetcdfs/2024.260.01/i2map_2024.260.01_1S.nc INFO 2025-10-21 20:46:22,643 process.py archive():337 [1] Archiving steps for 2024.260.01 INFO 2025-10-21 20:46:22,643 process.py archive():347 [1] nc_file_base = /data/auv_data/i2map/missionnetcdfs/2024.260.01/i2map_2024.260.01, BASE_PATH = /data/auv_data INFO 2025-10-21 20:46:22,645 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/i2map/missionnetcdfs/2024.260.01/i2map_2024.260.01 files to /Volumes/AUVCTD/surveys/2024/netcdf INFO 2025-10-21 20:46:22,646 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2024/netcdf/i2map_2024.260.01_1S.nc INFO 2025-10-21 20:46:22,695 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2024.260.01/i2map_2024.260.01_1S.nc /Volumes/AUVCTD/surveys/2024/netcdf done. INFO 2025-10-21 20:46:22,696 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2024/netcdf/i2map_2024.260.01_cal.nc INFO 2025-10-21 20:46:23,102 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2024.260.01/i2map_2024.260.01_cal.nc /Volumes/AUVCTD/surveys/2024/netcdf done. INFO 2025-10-21 20:46:23,103 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2024/netcdf/i2map_2024.260.01_align.nc INFO 2025-10-21 20:46:23,478 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2024.260.01/i2map_2024.260.01_align.nc /Volumes/AUVCTD/surveys/2024/netcdf done. INFO 2025-10-21 20:46:23,488 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2024.260.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2024/2024260/2024.260.01 done. INFO 2025-10-21 20:46:23,991 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2024.260.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2024/2024260/2024.260.01 done. INFO 2025-10-21 20:46:24,137 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2024.260.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2024/2024260/2024.260.01 done. INFO 2025-10-21 20:46:24,408 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2024.260.01/seabird25p.nc /Volumes/AUVCTD/missionnetcdfs/2024/2024260/2024.260.01 done. INFO 2025-10-21 20:46:24,509 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2024.260.01/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2024/2024260/2024.260.01 done. INFO 2025-10-21 20:46:24,509 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-10-21 20:46:24,510 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2024.260.01/i2map_2024.260.01_processing.log /Volumes/AUVCTD/surveys/2024/netcdf