INFO 2025-10-21 20:32:52,703 process.py process_mission():429 [1] commandline = /src/data/process_i2map.py -v --noinput --start_year 2024 --end_year 2024 --start_yd 235 --end_yd 365 --num_cores 1 --clobber
INFO 2025-10-21 20:32:52,704 process.py process_mission():449 [1] Processing i2map mission 2024.239.02 by user docker_user on host c10f68273022
INFO 2025-10-21 20:32:52,704 process.py download_process():165 [1] Download and processing steps for 2024.239.02
INFO 2025-10-21 20:32:52,704 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/M3/master/i2MAP/2024/08/20240826/2024.239.02
INFO 2025-10-21 20:32:52,705 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/M3/master/i2MAP/2024/08/20240826/2024.239.02 to /data/auv_data/i2map/missionlogs/2024.239.02
INFO 2025-10-21 20:32:55,428 logs2netcdfs.py download_process_logs():779 [1] Processing mission: i2map 2024.239.02
INFO 2025-10-21 20:32:55,429 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2024.239.02/gps.log (526532 bytes)
INFO 2025-10-21 20:32:55,493 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2024.239.02/navigation.log (167580868 bytes)
INFO 2025-10-21 20:33:09,454 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2024.239.02/parosci.log (41282486 bytes)
INFO 2025-10-21 20:33:13,047 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2024.239.02/seabird25p.log (82831810 bytes)
INFO 2025-10-21 20:33:18,837 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2024.239.02/seabird25p.log: [1]
INFO 2025-10-21 20:33:19,130 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2024.239.02/tailCone.log (20726279 bytes)
WARNING 2025-10-21 20:33:21,185 logs2netcdfs.py _create_variable():536 [1] elevatorAngle: shape mismatch: objects cannot be broadcast to a single shape.  Mismatch is between arg 0 with shape (431787,) and arg 1 with shape (431786,).
INFO 2025-10-21 20:33:21,185 logs2netcdfs.py _create_variable():537 [1] len(data) (431786) does not match shape of elevatorAngle.shape[0] (431787)
WARNING 2025-10-21 20:33:21,185 logs2netcdfs.py _create_variable():544 [1] elevatorAngle data is short by one, appending the last value: 0.15429827570915222
WARNING 2025-10-21 20:33:21,225 logs2netcdfs.py _create_variable():536 [1] rudderAngle: shape mismatch: objects cannot be broadcast to a single shape.  Mismatch is between arg 0 with shape (431787,) and arg 1 with shape (431786,).
INFO 2025-10-21 20:33:21,225 logs2netcdfs.py _create_variable():537 [1] len(data) (431786) does not match shape of rudderAngle.shape[0] (431787)
WARNING 2025-10-21 20:33:21,225 logs2netcdfs.py _create_variable():544 [1] rudderAngle data is short by one, appending the last value: -0.0479828342795372
WARNING 2025-10-21 20:33:21,260 logs2netcdfs.py _create_variable():536 [1] propPwm: shape mismatch: objects cannot be broadcast to a single shape.  Mismatch is between arg 0 with shape (431787,) and arg 1 with shape (431786,).
INFO 2025-10-21 20:33:21,260 logs2netcdfs.py _create_variable():537 [1] len(data) (431786) does not match shape of propPwm.shape[0] (431787)
WARNING 2025-10-21 20:33:21,260 logs2netcdfs.py _create_variable():544 [1] propPwm data is short by one, appending the last value: 0
WARNING 2025-10-21 20:33:21,288 logs2netcdfs.py _create_variable():536 [1] propTemp: shape mismatch: objects cannot be broadcast to a single shape.  Mismatch is between arg 0 with shape (431787,) and arg 1 with shape (431786,).
INFO 2025-10-21 20:33:21,288 logs2netcdfs.py _create_variable():537 [1] len(data) (431786) does not match shape of propTemp.shape[0] (431787)
WARNING 2025-10-21 20:33:21,288 logs2netcdfs.py _create_variable():544 [1] propTemp data is short by one, appending the last value: 0
INFO 2025-10-21 20:33:21,852 logs2netcdfs.py download_process_logs():807 [1] Time to process: 26.42 seconds
INFO 2025-10-21 20:33:21,853 process.py calibrate():227 [1] Calibration steps for 2024.239.02
INFO 2025-10-21 20:33:22,440 calibrate.py _nudge_pos():1680 [1] seg#   end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2025-10-21 20:33:22,442 calibrate.py _nudge_pos():1711 [1]                   -            -            -         0      0.00              -              -                             -
INFO 2025-10-21 20:33:24,087 calibrate.py _nudge_pos():1806 [1]   190:        0.190    0.0042696    0.0040223     13959     46.53         13.617         16.018 2024-08-26T20:15:55.384534528
INFO 2025-10-21 20:33:25,822 calibrate.py _nudge_pos():1806 [1]   355:        0.040    0.0026399    0.0011826     13901     46.33          8.456          4.729 2024-08-26T21:05:00.782761216
INFO 2025-10-21 20:33:27,737 calibrate.py _nudge_pos():1806 [1]   539:        0.030    0.0004757    0.0001888     13971     46.57          1.517          0.751 2024-08-26T21:54:37.978809088
INFO 2025-10-21 20:33:27,821 calibrate.py _nudge_pos():1806 [1]   547:        0.020   -0.0000098    0.0000144        20      0.06        -23.030         42.139 2024-08-26T21:54:49.977987072
INFO 2025-10-21 20:33:29,966 calibrate.py _nudge_pos():1806 [1]   749:        0.040   -0.0000190    0.0012463     13971     46.57         -0.061          4.959 2024-08-26T22:44:46.182733056
INFO 2025-10-21 20:33:32,695 calibrate.py _nudge_pos():1806 [1]  1006:        0.060   -0.0011822    0.0028935     14020     46.73         -3.756         11.473 2024-08-26T23:35:46.383095040
INFO 2025-10-21 20:33:34,569 calibrate.py _nudge_pos():1806 [1]  1176:        0.060    0.0012688    0.0009543     14010     46.70          4.035          3.786 2024-08-27T00:25:17.579554048
INFO 2025-10-21 20:33:36,483 calibrate.py _nudge_pos():1806 [1]  1355:        0.110    0.0007073    0.0000825     13971     46.57          2.256          0.328 2024-08-27T01:14:51.775807744
INFO 2025-10-21 20:33:39,615 calibrate.py _nudge_pos():1806 [1]  1646:        0.100   -0.0012895    0.0027337     13706     45.68         -4.193         11.088 2024-08-27T02:05:22.978156032
INFO 2025-10-21 20:33:41,813 calibrate.py _nudge_pos():1806 [1]  1843:        0.010   -0.0000433    0.0008757      5771     19.23         -0.334          8.436 2024-08-27T02:27:54.175592704
INFO 2025-10-21 20:33:44,065 calibrate.py _nudge_pos():1806 [1]  2045:        0.040    0.0000668    0.0008030      1500      5.00          1.986         29.778 2024-08-27T02:36:15.181271552
INFO 2025-10-21 20:33:51,648 calibrate.py _nudge_pos():1806 [1]  2735:        0.010    0.0036228    0.0040329     36373    121.24          4.439          6.164 2024-08-27T04:48:58.775727872
INFO 2025-10-21 20:33:55,031 calibrate.py _nudge_pos():1806 [1]  3031:        0.090    0.0016458   -0.0000744      3865     12.88         18.984         -1.071 2024-08-27T05:06:46.782564352
INFO 2025-10-21 20:33:55,101 calibrate.py _nudge_pos():1806 [1]  3037:        0.070   -0.0000848    0.0000256        30      0.10       -130.272         49.127 2024-08-27T05:06:57.781810944
INFO 2025-10-21 20:33:55,112 calibrate.py _nudge_pos():1806 [1]  3038:        0.070   -0.0000772    0.0000147        15      0.05       -245.735         58.526 2024-08-27T05:07:00.781605376
INFO 2025-10-21 20:33:55,170 calibrate.py _nudge_pos():1806 [1]  3043:        0.060    0.0044042    0.0018886     41392    137.97          4.743          2.536 2024-08-27T07:25:03.384208128
INFO 2025-10-21 20:33:58,786 calibrate.py _nudge_pos():1806 [1]  3358:        0.160    0.0011097    0.0001841      2665      8.88         18.568          3.842 2024-08-27T07:39:10.376185344
INFO 2025-10-21 20:33:59,189 calibrate.py _nudge_pos():1806 [1]  3393:        0.190    0.0006290   -0.0000714      2510      8.36         11.175         -1.582 2024-08-27T07:48:06.379466496
INFO 2025-10-21 20:34:00,877 calibrate.py _nudge_pos():1806 [1]  3536:        0.060    0.0006043   -0.0000091      2405      8.01         11.204         -0.209 2024-08-27T07:58:29.576774656
INFO 2025-10-21 20:34:02,151 calibrate.py _nudge_pos():1806 [1]  3648:        0.180    0.0042482   -0.0006806     37001    123.34          5.118         -1.023 2024-08-27T10:03:40.982208256
INFO 2025-10-21 20:34:02,794 calibrate.py _nudge_pos():1806 [1]  3703:        0.040    0.0008062   -0.0000904      2346      7.82         15.323         -2.143 2024-08-27T10:12:24.176366848
INFO 2025-10-21 20:34:04,048 calibrate.py _nudge_pos():1806 [1]  3808:        0.020    0.0023971   -0.0006964     41278    137.59          2.589         -0.938 2024-08-27T12:31:43.783694592
INFO 2025-10-21 20:34:13,548 calibrate.py _nudge_pos():1806 [1]  4605:        0.090    0.0015755   -0.0022802     13941     46.47          5.037         -9.093 2024-08-27T13:31:27.978160384
INFO 2025-10-21 20:34:17,879 calibrate.py _nudge_pos():1806 [1]  4968:        0.090    0.0002556   -0.0021361     13971     46.57          0.815         -8.500 2024-08-27T14:24:04.181945600
INFO 2025-10-21 20:34:22,265 calibrate.py _nudge_pos():1806 [1]  5329:        0.140    0.0006272   -0.0018858     13951     46.50          2.003         -7.515 2024-08-27T15:16:35.376073984
INFO 2025-10-21 20:34:26,850 calibrate.py _nudge_pos():1806 [1]  5713:        0.150    0.0013388    0.0000344     13821     46.07          4.315          0.138 2024-08-27T16:09:02.580475904
INFO 2025-10-21 20:34:31,052 calibrate.py _nudge_pos():1806 [1]  6063:        0.190    0.0000441   -0.0000124        20      0.06        103.499        -36.243 2024-08-27T16:14:55.576293888
INFO 2025-10-21 20:34:31,092 calibrate.py _nudge_pos():1806 [1]  6066:        0.190    0.0013582    0.0020906     13932     46.44          4.342          8.342 2024-08-27T17:01:23.985274880
INFO 2025-10-21 20:34:35,582 calibrate.py _nudge_pos():1806 [1]  6428:        0.020    0.0038643    0.0015175     13956     46.52         12.330          6.045 2024-08-27T17:53:56.179334656
INFO 2025-10-21 20:34:43,703 calibrate.py _nudge_pos():1806 [1]  7084:        0.050    0.0035915    0.0021771     13941     46.47         11.469          8.682 2024-08-27T18:51:19.383459072
INFO 2025-10-21 20:34:45,976 calibrate.py _nudge_pos():1806 [1]  7264:        0.200    0.0005548   -0.0001328      9555     31.85          2.585         -0.773 2024-08-27T19:26:09.380284672
INFO 2025-10-21 20:34:46,460 calibrate.py _nudge_pos():1862 [1] 7251:            -            -            -         1      0.00              -              -
INFO 2025-10-21 20:34:46,461 calibrate.py _nudge_pos():1868 [1] Points in final series = 431623
INFO 2025-10-21 20:35:24,833 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 2935 on port side
INFO 2025-10-21 20:35:24,838 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "2935" 
INFO 2025-10-21 20:35:25,918 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2014_Nov 2021_Mar 2022_Apr
WARNING 2025-10-21 20:35:25,922 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2014_Nov
INFO 2025-10-21 20:35:25,922 calibrate.py _cal_date_xml_files():1087 [1] {xml_files}
WARNING 2025-10-21 20:35:25,941 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2021_Mar
INFO 2025-10-21 20:35:25,941 calibrate.py _cal_date_xml_files():1087 [1] {xml_files}
WARNING 2025-10-21 20:35:25,946 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr
INFO 2025-10-21 20:35:25,946 calibrate.py _cal_date_xml_files():1087 [1] {xml_files}
INFO 2025-10-21 20:35:25,953 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml has CalibrationDate 2022-03-22 00:00:00+00:00
INFO 2025-10-21 20:35:25,953 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml is just before 2024.239.02 with mission_start=2024-08-26T19:27:43.332653824
INFO 2025-10-21 20:35:38,370 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_port: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml file: {'Soc': 0.42595, 'offset': -0.5339, 'A': -0.0041113, 'B': 0.00020802, 'C': -3.0027e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.09, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0}
INFO 2025-10-21 20:35:38,378 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 3488 on stbd side
INFO 2025-10-21 20:35:38,378 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "3488" 
INFO 2025-10-21 20:35:38,507 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2016_dec 2021_mar 2022_Jan
WARNING 2025-10-21 20:35:38,512 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec
INFO 2025-10-21 20:35:38,512 calibrate.py _cal_date_xml_files():1087 [1] {xml_files}
WARNING 2025-10-21 20:35:38,531 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2021_mar
INFO 2025-10-21 20:35:38,531 calibrate.py _cal_date_xml_files():1087 [1] {xml_files}
WARNING 2025-10-21 20:35:38,535 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2022_Jan
INFO 2025-10-21 20:35:38,535 calibrate.py _cal_date_xml_files():1087 [1] {xml_files}
INFO 2025-10-21 20:35:38,542 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec/43-3488.xml has CalibrationDate 2016-12-16 00:00:00+00:00
INFO 2025-10-21 20:35:38,542 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec/43-3488.xml is just before 2024.239.02 with mission_start=2024-08-26T19:27:43.332653824
INFO 2025-10-21 20:35:50,924 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_stbd: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec/43-3488.xml file: {'Soc': 0.44664, 'offset': -0.507, 'A': -0.0030812, 'B': 7.8442e-05, 'C': -9.0601e-07, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.44, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0}
INFO 2025-10-21 20:36:08,091 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 75 seconds, d_end_time_diff: 0 seconds
INFO 2025-10-21 20:36:13,001 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 75 seconds, d_end_time_diff: 0 seconds
INFO 2025-10-21 20:36:13,011 calibrate.py _ctd_process():2919 [1] Performing range checking of ['seabird25p_salinity'] in 2024.239.02/seabird25p.nc
INFO 2025-10-21 20:36:13,014 calibrate.py _range_qc_combined_nc():898 [1] Setting 57 seabird25p_salinity values to NaN
INFO 2025-10-21 20:36:13,014 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('seabird25p_salinity', Range(min=30, max=40))]
INFO 2025-10-21 20:36:13,014 calibrate.py _range_qc_combined_nc():936 [1] Done range checking seabird25p
INFO 2025-10-21 20:36:13,428 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/i2map/missionnetcdfs/2024.239.02/i2map_2024.239.02_cal.nc
INFO 2025-10-21 20:37:01,794 calibrate.py write_netcdf():3512 [1] Data variables written: depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_propRpm, tailcone_time, time
INFO 2025-10-21 20:37:01,802 process.py align():251 [1] Alignment steps for 2024.239.02
INFO 2025-10-21 20:37:01,858 align.py process_cal():139 [1] Processing i2map_2024.239.02_cal.nc from /data/auv_data/i2map/missionnetcdfs/2024.239.02
INFO 2025-10-21 20:37:02,070 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc
INFO 2025-10-21 20:37:02,086 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00
INFO 2025-10-21 20:37:02,394 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc
INFO 2025-10-21 20:37:02,415 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00
INFO 2025-10-21 20:37:02,703 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc
INFO 2025-10-21 20:37:02,726 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00
INFO 2025-10-21 20:37:02,897 align.py process_cal():161 [1] Skipping navigation_posx
INFO 2025-10-21 20:37:02,898 align.py process_cal():161 [1] Skipping navigation_posy
INFO 2025-10-21 20:37:03,031 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc
INFO 2025-10-21 20:37:03,051 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00
INFO 2025-10-21 20:37:03,353 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.239.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0)
INFO 2025-10-21 20:37:03,379 align.py process_cal():249 [1] seabird25p_temperature: instrument_sample_rate_hz = 7.99
INFO 2025-10-21 20:37:03,789 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.239.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0)
INFO 2025-10-21 20:37:03,818 align.py process_cal():249 [1] seabird25p_conductivity: instrument_sample_rate_hz = 7.99
INFO 2025-10-21 20:37:04,208 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.239.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0)
INFO 2025-10-21 20:37:04,236 align.py process_cal():249 [1] seabird25p_salinity: instrument_sample_rate_hz = 7.99
INFO 2025-10-21 20:37:04,625 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.239.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0)
INFO 2025-10-21 20:37:04,652 align.py process_cal():249 [1] seabird25p_temperature_onboard: instrument_sample_rate_hz = 7.99
INFO 2025-10-21 20:37:05,044 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.239.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0)
INFO 2025-10-21 20:37:05,069 align.py process_cal():249 [1] seabird25p_conductivity_onboard: instrument_sample_rate_hz = 7.99
INFO 2025-10-21 20:37:05,458 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.239.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0)
INFO 2025-10-21 20:37:05,484 align.py process_cal():249 [1] seabird25p_salinity_onboard: instrument_sample_rate_hz = 7.99
INFO 2025-10-21 20:37:05,882 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.239.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0)
INFO 2025-10-21 20:37:05,907 align.py process_cal():249 [1] seabird25p_dissolvedO2_port: instrument_sample_rate_hz = 7.99
INFO 2025-10-21 20:37:06,286 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.239.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0)
INFO 2025-10-21 20:37:06,312 align.py process_cal():249 [1] seabird25p_oxygen_mll_port: instrument_sample_rate_hz = 7.99
INFO 2025-10-21 20:37:06,693 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.239.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0)
INFO 2025-10-21 20:37:06,716 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_port: instrument_sample_rate_hz = 7.99
INFO 2025-10-21 20:37:07,102 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.239.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0)
INFO 2025-10-21 20:37:07,132 align.py process_cal():249 [1] seabird25p_dissolvedO2_stbd: instrument_sample_rate_hz = 7.99
INFO 2025-10-21 20:37:07,568 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.239.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0)
INFO 2025-10-21 20:37:07,594 align.py process_cal():249 [1] seabird25p_oxygen_mll_stbd: instrument_sample_rate_hz = 7.99
INFO 2025-10-21 20:37:07,990 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.239.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0)
INFO 2025-10-21 20:37:08,013 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_stbd: instrument_sample_rate_hz = 7.99
INFO 2025-10-21 20:37:08,394 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.239.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0)
INFO 2025-10-21 20:37:08,416 align.py process_cal():249 [1] seabird25p_beam_transmittance: instrument_sample_rate_hz = 7.99
INFO 2025-10-21 20:37:08,867 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.239.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0)
INFO 2025-10-21 20:37:08,888 align.py process_cal():249 [1] seabird25p_depth: instrument_sample_rate_hz = 7.99
INFO 2025-10-21 20:37:09,314 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00
INFO 2025-10-21 20:37:09,488 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/i2map/missionnetcdfs/2024.239.02/i2map_2024.239.02_align.nc
INFO 2025-10-21 20:37:09,653 align.py write_netcdf():342 [1] Data variables written: navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_latitude, seabird25p_longitude, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time
INFO 2025-10-21 20:37:09,658 process.py resample():273 [1] Resampling steps for 2024.239.02
INFO 2025-10-21 20:37:09,659 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m
INFO 2025-10-21 20:37:09,686 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2024.239.02/i2map_2024.239.02_align.nc mission netCDF file
INFO 2025-10-21 20:37:09,695 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2024.239.02/i2map_2024.239.02_align.nc mission netCDF file
INFO 2025-10-21 20:37:09,699 resample.py get_mission_start_end():1145 [1] navigation: 2024-08-26T19:27:04.385321728 to 2024-08-27T19:26:45.777790976 (0 days 00:00:00.039997440 before mission_end)
INFO 2025-10-21 20:37:09,703 resample.py get_mission_start_end():1145 [1] seabird25p: 2024-08-26T19:27:43.332653824 to 2024-08-27T19:26:45.817788416 (0 days 00:00:00 before mission_end)
INFO 2025-10-21 20:37:09,707 resample.py get_mission_start_end():1145 [1] tailcone  : 2024-08-26T19:26:23.788102912 to 2024-08-27T19:25:41.182216192 (0 days 00:01:04.635572224 before mission_end)
INFO 2025-10-21 20:37:09,709 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2024.239.02/i2map_2024.239.02_align.nc mission netCDF file
INFO 2025-10-21 20:37:09,710 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter 
INFO 2025-10-21 20:37:10,890 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter
INFO 2025-10-21 20:37:11,026 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter
INFO 2025-10-21 20:37:11,167 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter
INFO 2025-10-21 20:37:11,298 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter
INFO 2025-10-21 20:37:11,521 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature with frequency 1S following 3 point median filter
INFO 2025-10-21 20:37:11,738 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity with frequency 1S following 3 point median filter
INFO 2025-10-21 20:37:11,973 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity with frequency 1S following 3 point median filter
INFO 2025-10-21 20:37:12,193 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature_onboard with frequency 1S following 3 point median filter
INFO 2025-10-21 20:37:12,421 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity_onboard with frequency 1S following 3 point median filter
INFO 2025-10-21 20:37:12,652 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity_onboard with frequency 1S following 3 point median filter
INFO 2025-10-21 20:37:12,886 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_port with frequency 1S following 3 point median filter
INFO 2025-10-21 20:37:13,122 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_port with frequency 1S following 3 point median filter
INFO 2025-10-21 20:37:13,357 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_port with frequency 1S following 3 point median filter
INFO 2025-10-21 20:37:13,592 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_stbd with frequency 1S following 3 point median filter
INFO 2025-10-21 20:37:13,828 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_stbd with frequency 1S following 3 point median filter
INFO 2025-10-21 20:37:14,065 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_stbd with frequency 1S following 3 point median filter
INFO 2025-10-21 20:37:14,303 resample.py resample_variable():1031 [1] Resampling seabird25p_beam_transmittance with frequency 1S following 3 point median filter
INFO 2025-10-21 20:37:14,442 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter
INFO 2025-10-21 20:37:14,978 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/i2map/missionnetcdfs/2024.239.02/i2map_2024.239.02_1S.nc
INFO 2025-10-21 20:37:14,979 process.py archive():337 [1] Archiving steps for 2024.239.02
INFO 2025-10-21 20:37:14,979 process.py archive():347 [1] nc_file_base = /data/auv_data/i2map/missionnetcdfs/2024.239.02/i2map_2024.239.02, BASE_PATH = /data/auv_data
INFO 2025-10-21 20:37:14,983 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/i2map/missionnetcdfs/2024.239.02/i2map_2024.239.02 files to /Volumes/AUVCTD/surveys/2024/netcdf
INFO 2025-10-21 20:37:15,032 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2024.239.02/i2map_2024.239.02_1S.nc /Volumes/AUVCTD/surveys/2024/netcdf done.
INFO 2025-10-21 20:37:15,409 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2024.239.02/i2map_2024.239.02_cal.nc /Volumes/AUVCTD/surveys/2024/netcdf done.
INFO 2025-10-21 20:37:15,741 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2024.239.02/i2map_2024.239.02_align.nc /Volumes/AUVCTD/surveys/2024/netcdf done.
INFO 2025-10-21 20:37:15,756 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2024.239.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2024/2024239/2024.239.02 done.
INFO 2025-10-21 20:37:16,180 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2024.239.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2024/2024239/2024.239.02 done.
INFO 2025-10-21 20:37:16,312 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2024.239.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2024/2024239/2024.239.02 done.
INFO 2025-10-21 20:37:16,554 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2024.239.02/seabird25p.nc /Volumes/AUVCTD/missionnetcdfs/2024/2024239/2024.239.02 done.
INFO 2025-10-21 20:37:16,636 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2024.239.02/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2024/2024239/2024.239.02 done.
INFO 2025-10-21 20:37:16,637 archive.py copy_to_AUVTCD():116 [1] Archiving product files
INFO 2025-10-21 20:37:16,637 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2024.239.02/i2map_2024.239.02_processing.log /Volumes/AUVCTD/surveys/2024/netcdf