INFO 2025-10-21 18:59:24,042 process.py process_mission():429 [1] commandline = /src/data/process_i2map.py -v --noinput --start_year 2024 --end_year 2024 --start_yd 1 --end_yd 365 --num_cores 1 --clobber INFO 2025-10-21 18:59:24,042 process.py process_mission():449 [1] Processing i2map mission 2024.200.00 by user docker_user on host abfc52d0d69d INFO 2025-10-21 18:59:24,042 process.py download_process():165 [1] Download and processing steps for 2024.200.00 INFO 2025-10-21 18:59:24,043 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/M3/master/i2MAP/2024/07/20240718/2024.200.00 INFO 2025-10-21 18:59:24,043 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/M3/master/i2MAP/2024/07/20240718/2024.200.00 to /data/auv_data/i2map/missionlogs/2024.200.00 INFO 2025-10-21 18:59:26,926 logs2netcdfs.py download_process_logs():779 [1] Processing mission: i2map 2024.200.00 INFO 2025-10-21 18:59:26,926 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2024.200.00/gps.log (790484 bytes) INFO 2025-10-21 18:59:27,063 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2024.200.00/navigation.log (186459396 bytes) INFO 2025-10-21 18:59:45,983 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2024.200.00/parosci.log (45929942 bytes) INFO 2025-10-21 18:59:51,123 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2024.200.00/parosci.log: [534188 534189] INFO 2025-10-21 18:59:51,277 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2024.200.00/seabird25p.log (92231050 bytes) INFO 2025-10-21 19:00:00,191 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2024.200.00/seabird25p.log: [ 1 269245 293548] INFO 2025-10-21 19:00:00,703 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2024.200.00/tailCone.log (23076903 bytes) INFO 2025-10-21 19:00:06,204 logs2netcdfs.py download_process_logs():807 [1] Time to process: 39.28 seconds INFO 2025-10-21 19:00:06,204 process.py calibrate():227 [1] Calibration steps for 2024.200.00 INFO 2025-10-21 19:00:07,210 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-10-21 19:00:07,213 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-10-21 19:00:09,281 calibrate.py _nudge_pos():1806 [1] 186: 0.150 0.0013145 -0.0045965 36087 120.29 1.624 -7.081 2024-07-18T17:58:25.177297152 INFO 2025-10-21 19:00:09,593 calibrate.py _nudge_pos():1806 [1] 211: 0.150 -0.0000099 0.0000216 20 0.06 -23.214 63.326 2024-07-18T17:58:53.175378944 INFO 2025-10-21 19:00:09,617 calibrate.py _nudge_pos():1806 [1] 213: 0.040 0.0003765 -0.0001147 3041 10.13 5.520 -2.097 2024-07-18T18:09:02.373646336 INFO 2025-10-21 19:00:10,997 calibrate.py _nudge_pos():1806 [1] 331: 0.200 -0.0005728 -0.0016064 40742 135.80 -0.627 -2.192 2024-07-18T20:26:47.777427200 INFO 2025-10-21 19:00:13,947 calibrate.py _nudge_pos():1806 [1] 543: 0.060 0.0006436 0.0001246 3080 10.26 9.317 2.249 2024-07-18T20:40:34.980759808 INFO 2025-10-21 19:00:15,050 calibrate.py _nudge_pos():1806 [1] 621: 0.110 0.0005163 -0.0001117 2515 8.38 9.155 -2.470 2024-07-18T20:50:14.981027072 INFO 2025-10-21 19:00:15,124 calibrate.py _nudge_pos():1806 [1] 626: 0.100 -0.0000268 -0.0000014 20 0.06 -62.770 -4.227 2024-07-18T20:50:22.980479232 INFO 2025-10-21 19:00:15,644 calibrate.py _nudge_pos():1806 [1] 665: 0.160 0.0005733 -0.0000732 1935 6.45 13.214 -2.105 2024-07-18T20:57:27.971365120 INFO 2025-10-21 19:00:16,385 calibrate.py _nudge_pos():1806 [1] 722: 0.050 0.0026186 -0.0012489 35687 118.96 3.271 -1.945 2024-07-18T22:57:21.578569472 INFO 2025-10-21 19:00:16,941 calibrate.py _nudge_pos():1806 [1] 770: 0.090 0.0002925 -0.0001375 1400 4.66 9.320 -5.466 2024-07-18T23:02:48.576168448 INFO 2025-10-21 19:00:18,592 calibrate.py _nudge_pos():1806 [1] 893: 0.090 0.0016825 -0.0007652 41042 136.81 1.827 -1.036 2024-07-19T01:21:39.175483392 INFO 2025-10-21 19:00:18,992 calibrate.py _nudge_pos():1806 [1] 919: 0.100 -0.0000365 -0.0000370 145 0.48 -11.308 -14.301 2024-07-19T01:22:33.171784448 INFO 2025-10-21 19:00:19,226 calibrate.py _nudge_pos():1806 [1] 934: 0.140 0.0009948 0.0000399 3145 10.48 14.103 0.705 2024-07-19T01:33:16.177735680 INFO 2025-10-21 19:00:20,381 calibrate.py _nudge_pos():1806 [1] 1024: 0.190 0.0004780 0.0000238 2470 8.23 8.630 0.536 2024-07-19T01:42:59.177797376 INFO 2025-10-21 19:00:20,811 calibrate.py _nudge_pos():1806 [1] 1060: 0.030 0.0003526 -0.0001590 1981 6.60 7.939 -4.464 2024-07-19T01:50:10.378257920 INFO 2025-10-21 19:00:21,351 calibrate.py _nudge_pos():1806 [1] 1101: 0.120 0.0023276 0.0006961 19181 63.93 5.409 2.017 2024-07-19T02:54:46.572720640 INFO 2025-10-21 19:00:21,479 calibrate.py _nudge_pos():1806 [1] 1110: 0.090 -0.0000558 -0.0000101 25 0.08 -103.700 -23.433 2024-07-19T02:54:59.571830016 INFO 2025-10-21 19:00:22,733 calibrate.py _nudge_pos():1806 [1] 1196: 0.090 -0.0000589 -0.0000104 30 0.10 -90.469 -19.879 2024-07-19T02:56:30.575595776 INFO 2025-10-21 19:00:22,750 calibrate.py _nudge_pos():1806 [1] 1197: 0.100 0.0027811 -0.0001923 14266 47.55 8.690 -0.749 2024-07-19T03:44:03.780137984 INFO 2025-10-21 19:00:22,780 calibrate.py _nudge_pos():1806 [1] 1199: 0.100 0.0027779 -0.0002505 155 0.51 804.068 -90.445 2024-07-19T03:44:35.777946112 INFO 2025-10-21 19:00:23,412 calibrate.py _nudge_pos():1806 [1] 1243: 0.120 0.0000411 -0.0001236 365 1.21 5.028 -18.879 2024-07-19T03:46:33.779862272 INFO 2025-10-21 19:00:24,779 calibrate.py _nudge_pos():1806 [1] 1334: 0.190 0.0005197 -0.0001280 2445 8.15 9.477 -2.910 2024-07-19T03:56:12.780198144 INFO 2025-10-21 19:00:25,232 calibrate.py _nudge_pos():1806 [1] 1364: 0.010 -0.0000761 0.0001793 431 1.43 -7.892 23.187 2024-07-19T03:58:08.972238336 INFO 2025-10-21 19:00:26,220 calibrate.py _nudge_pos():1806 [1] 1429: 0.020 0.0001868 0.0000187 1481 4.93 5.625 0.704 2024-07-19T04:04:10.977439232 INFO 2025-10-21 19:00:27,874 calibrate.py _nudge_pos():1806 [1] 1528: 0.050 0.0002569 -0.0001947 1390 4.63 8.245 -7.792 2024-07-19T04:10:26.971681792 INFO 2025-10-21 19:00:29,144 calibrate.py _nudge_pos():1806 [1] 1612: 0.070 0.0003118 -0.0003647 1875 6.25 7.417 -10.819 2024-07-19T04:18:04.980306176 INFO 2025-10-21 19:00:30,220 calibrate.py _nudge_pos():1806 [1] 1684: 0.110 0.0002140 -0.0001338 1675 5.58 5.699 -4.444 2024-07-19T04:24:50.972493568 INFO 2025-10-21 19:01:07,284 calibrate.py _nudge_pos():1806 [1] 4098: 0.110 0.0006247 -0.0005027 3490 11.63 7.980 -8.009 2024-07-19T05:16:42.179361536 INFO 2025-10-21 19:01:08,687 calibrate.py _nudge_pos():1806 [1] 4180: 0.140 0.0002565 -0.0002899 2125 7.08 5.383 -7.586 2024-07-19T05:25:08.174698240 INFO 2025-10-21 19:01:09,704 calibrate.py _nudge_pos():1806 [1] 4238: 0.060 0.0039482 -0.0037637 35013 116.71 5.027 -5.976 2024-07-19T07:22:47.771082752 INFO 2025-10-21 19:01:11,034 calibrate.py _nudge_pos():1806 [1] 4326: 0.090 0.0003104 -0.0002951 2515 8.38 5.503 -6.526 2024-07-19T07:32:37.780664320 INFO 2025-10-21 19:01:11,331 calibrate.py _nudge_pos():1806 [1] 4346: 0.100 0.0020575 -0.0008465 40428 134.76 2.269 -1.164 2024-07-19T09:47:42.375461888 INFO 2025-10-21 19:01:22,012 calibrate.py _nudge_pos():1806 [1] 4997: 0.130 0.0051746 -0.0052319 14015 46.72 16.456 -20.752 2024-07-19T10:45:16.578832640 INFO 2025-10-21 19:01:28,505 calibrate.py _nudge_pos():1806 [1] 5375: 0.150 0.0033632 -0.0031749 13961 46.53 10.736 -12.643 2024-07-19T11:38:05.771728128 INFO 2025-10-21 19:01:34,507 calibrate.py _nudge_pos():1806 [1] 5741: 0.190 0.0020853 -0.0020078 13950 46.50 6.661 -8.001 2024-07-19T12:30:40.975581696 INFO 2025-10-21 19:01:41,758 calibrate.py _nudge_pos():1806 [1] 6162: 0.010 0.0025132 -0.0035313 13996 46.65 8.000 -14.027 2024-07-19T13:24:20.375037696 INFO 2025-10-21 19:01:48,302 calibrate.py _nudge_pos():1806 [1] 6542: 0.050 -0.0013419 -0.0036861 14011 46.70 -4.266 -14.626 2024-07-19T14:17:21.577110528 INFO 2025-10-21 19:01:48,363 calibrate.py _nudge_pos():1806 [1] 6546: 0.040 -0.0000152 0.0000088 30 0.10 -23.348 16.863 2024-07-19T14:17:30.576494080 INFO 2025-10-21 19:01:54,364 calibrate.py _nudge_pos():1806 [1] 6890: 0.080 -0.0032092 -0.0030420 14006 46.68 -10.205 -12.075 2024-07-19T15:09:54.771101952 INFO 2025-10-21 19:02:05,318 calibrate.py _nudge_pos():1806 [1] 7539: 0.110 -0.0026212 -0.0039374 14015 46.71 -8.329 -15.619 2024-07-19T16:07:25.974678272 INFO 2025-10-21 19:02:27,151 calibrate.py _nudge_pos():1806 [1] 8817: 0.010 -0.0018246 -0.0043415 14006 46.68 -5.800 -17.233 2024-07-19T17:15:25.375220224 INFO 2025-10-21 19:02:47,827 calibrate.py _nudge_pos():1806 [1] 10114: 0.110 0.0020999 -0.0034237 13946 46.48 6.703 -13.648 2024-07-19T18:23:31.575296512 INFO 2025-10-21 19:03:00,158 calibrate.py _nudge_pos():1862 [1] 10918: - - - 1 0.00 - - INFO 2025-10-21 19:03:00,158 calibrate.py _nudge_pos():1868 [1] Points in final series = 479945 INFO 2025-10-21 19:04:10,331 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 2935 on port side INFO 2025-10-21 19:04:10,333 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "2935" INFO 2025-10-21 19:04:10,587 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2014_Nov 2021_Mar 2022_Apr WARNING 2025-10-21 19:04:10,593 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2014_Nov INFO 2025-10-21 19:04:10,593 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 19:04:10,598 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2021_Mar INFO 2025-10-21 19:04:10,598 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 19:04:10,603 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr INFO 2025-10-21 19:04:10,603 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 19:04:10,612 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml has CalibrationDate 2022-03-22 00:00:00+00:00 INFO 2025-10-21 19:04:10,612 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml is just before 2024.200.00 with mission_start=2024-07-18T15:55:23.952945664 INFO 2025-10-21 19:04:27,986 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_port: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml file: {'Soc': 0.42595, 'offset': -0.5339, 'A': -0.0041113, 'B': 0.00020802, 'C': -3.0027e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.09, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 19:04:27,994 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 3488 on stbd side INFO 2025-10-21 19:04:27,995 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "3488" INFO 2025-10-21 19:04:28,197 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2016_dec 2021_mar 2022_Jan WARNING 2025-10-21 19:04:28,202 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec INFO 2025-10-21 19:04:28,202 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 19:04:28,207 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2021_mar INFO 2025-10-21 19:04:28,207 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 19:04:28,212 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2022_Jan INFO 2025-10-21 19:04:28,212 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 19:04:28,220 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec/43-3488.xml has CalibrationDate 2016-12-16 00:00:00+00:00 INFO 2025-10-21 19:04:28,220 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec/43-3488.xml is just before 2024.200.00 with mission_start=2024-07-18T15:55:23.952945664 INFO 2025-10-21 19:04:46,007 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_stbd: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec/43-3488.xml file: {'Soc': 0.44664, 'offset': -0.507, 'A': -0.0030812, 'B': 7.8442e-05, 'C': -9.0601e-07, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.44, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 19:05:12,166 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 7 seconds, d_end_time_diff: 0 seconds INFO 2025-10-21 19:05:19,628 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 7 seconds, d_end_time_diff: 0 seconds INFO 2025-10-21 19:05:19,636 calibrate.py _ctd_process():2919 [1] Performing range checking of ['seabird25p_salinity'] in 2024.200.00/seabird25p.nc WARNING 2025-10-21 19:05:19,640 calibrate.py _range_qc_combined_nc():890 [1] More than 500 (2153) seabird25p_salinity values found outside of range. This may indicate a problem with the seabird25p data. INFO 2025-10-21 19:05:19,640 calibrate.py _range_qc_combined_nc():898 [1] Setting 2153 seabird25p_salinity values to NaN INFO 2025-10-21 19:05:19,640 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('seabird25p_salinity', Range(min=30, max=40))] INFO 2025-10-21 19:05:19,640 calibrate.py _range_qc_combined_nc():936 [1] Done range checking seabird25p INFO 2025-10-21 19:05:20,164 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/i2map/missionnetcdfs/2024.200.00/i2map_2024.200.00_cal.nc INFO 2025-10-21 19:06:33,115 calibrate.py write_netcdf():3512 [1] Data variables written: depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_propRpm, tailcone_time, time INFO 2025-10-21 19:06:33,123 process.py align():251 [1] Alignment steps for 2024.200.00 INFO 2025-10-21 19:06:33,183 align.py process_cal():139 [1] Processing i2map_2024.200.00_cal.nc from /data/auv_data/i2map/missionnetcdfs/2024.200.00 INFO 2025-10-21 19:06:33,342 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 19:06:33,360 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 19:06:33,797 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 19:06:33,819 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 19:06:34,262 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 19:06:34,285 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 19:06:34,524 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-10-21 19:06:34,525 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-10-21 19:06:34,703 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 19:06:34,726 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 19:06:35,215 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.200.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 19:06:35,253 align.py process_cal():249 [1] seabird25p_temperature: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 19:06:35,750 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.200.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 19:06:35,780 align.py process_cal():249 [1] seabird25p_conductivity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 19:06:36,292 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.200.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 19:06:36,321 align.py process_cal():249 [1] seabird25p_salinity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 19:06:36,833 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.200.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 19:06:36,862 align.py process_cal():249 [1] seabird25p_temperature_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 19:06:37,397 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.200.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 19:06:37,427 align.py process_cal():249 [1] seabird25p_conductivity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 19:06:37,994 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.200.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 19:06:38,045 align.py process_cal():249 [1] seabird25p_salinity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 19:06:38,593 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.200.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 19:06:38,632 align.py process_cal():249 [1] seabird25p_dissolvedO2_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 19:06:39,195 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.200.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 19:06:39,232 align.py process_cal():249 [1] seabird25p_oxygen_mll_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 19:06:39,859 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.200.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 19:06:39,896 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 19:06:40,459 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.200.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 19:06:40,493 align.py process_cal():249 [1] seabird25p_dissolvedO2_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 19:06:41,080 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.200.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 19:06:41,123 align.py process_cal():249 [1] seabird25p_oxygen_mll_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 19:06:41,716 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.200.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 19:06:41,750 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 19:06:42,334 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.200.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 19:06:42,366 align.py process_cal():249 [1] seabird25p_beam_transmittance: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 19:06:42,957 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2024.200.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 19:06:42,991 align.py process_cal():249 [1] seabird25p_depth: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 19:06:43,599 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 19:06:43,873 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/i2map/missionnetcdfs/2024.200.00/i2map_2024.200.00_align.nc INFO 2025-10-21 19:06:44,124 align.py write_netcdf():342 [1] Data variables written: navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_latitude, seabird25p_longitude, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-10-21 19:06:44,133 process.py resample():273 [1] Resampling steps for 2024.200.00 INFO 2025-10-21 19:06:44,134 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-10-21 19:06:44,181 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2024.200.00/i2map_2024.200.00_align.nc mission netCDF file INFO 2025-10-21 19:06:44,191 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2024.200.00/i2map_2024.200.00_align.nc mission netCDF file INFO 2025-10-21 19:06:44,196 resample.py get_mission_start_end():1145 [1] navigation: 2024-07-18T15:55:52.071019520 to 2024-07-19T18:37:43.776916480 (0 days 00:00:00 before mission_end) INFO 2025-10-21 19:06:44,203 resample.py get_mission_start_end():1145 [1] seabird25p: 2024-07-18T15:55:23.952945664 to 2024-07-19T18:37:43.756918016 (0 days 00:00:00.019998464 before mission_end) INFO 2025-10-21 19:06:44,209 resample.py get_mission_start_end():1145 [1] tailcone : 2024-07-18T15:55:12.263746304 to 2024-07-19T18:37:43.666924032 (0 days 00:00:00.109992448 before mission_end) INFO 2025-10-21 19:06:44,210 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2024.200.00/i2map_2024.200.00_align.nc mission netCDF file INFO 2025-10-21 19:06:44,211 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-10-21 19:06:46,030 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-10-21 19:06:46,232 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-10-21 19:06:46,442 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-10-21 19:06:46,648 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-10-21 19:06:46,973 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature with frequency 1S following 3 point median filter INFO 2025-10-21 19:06:47,313 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity with frequency 1S following 3 point median filter INFO 2025-10-21 19:06:47,642 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity with frequency 1S following 3 point median filter INFO 2025-10-21 19:06:47,976 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 19:06:48,301 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 19:06:48,630 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 19:06:48,925 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_port with frequency 1S following 3 point median filter INFO 2025-10-21 19:06:49,240 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_port with frequency 1S following 3 point median filter INFO 2025-10-21 19:06:49,561 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_port with frequency 1S following 3 point median filter INFO 2025-10-21 19:06:49,871 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 19:06:50,138 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 19:06:50,471 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 19:06:50,801 resample.py resample_variable():1031 [1] Resampling seabird25p_beam_transmittance with frequency 1S following 3 point median filter INFO 2025-10-21 19:06:51,007 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-10-21 19:06:51,916 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/i2map/missionnetcdfs/2024.200.00/i2map_2024.200.00_1S.nc INFO 2025-10-21 19:06:51,924 process.py archive():337 [1] Archiving steps for 2024.200.00 INFO 2025-10-21 19:06:51,924 process.py archive():347 [1] nc_file_base = /data/auv_data/i2map/missionnetcdfs/2024.200.00/i2map_2024.200.00, BASE_PATH = /data/auv_data INFO 2025-10-21 19:06:51,925 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/i2map/missionnetcdfs/2024.200.00/i2map_2024.200.00 files to /Volumes/AUVCTD/surveys/2024/netcdf INFO 2025-10-21 19:06:51,927 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2024/netcdf/i2map_2024.200.00_1S.nc INFO 2025-10-21 19:06:51,983 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2024.200.00/i2map_2024.200.00_1S.nc /Volumes/AUVCTD/surveys/2024/netcdf done. INFO 2025-10-21 19:06:51,984 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2024/netcdf/i2map_2024.200.00_cal.nc INFO 2025-10-21 19:06:52,444 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2024.200.00/i2map_2024.200.00_cal.nc /Volumes/AUVCTD/surveys/2024/netcdf done. INFO 2025-10-21 19:06:52,445 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2024/netcdf/i2map_2024.200.00_align.nc INFO 2025-10-21 19:06:52,874 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2024.200.00/i2map_2024.200.00_align.nc /Volumes/AUVCTD/surveys/2024/netcdf done. INFO 2025-10-21 19:06:52,887 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2024.200.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2024/2024200/2024.200.00 done. INFO 2025-10-21 19:06:53,388 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2024.200.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2024/2024200/2024.200.00 done. INFO 2025-10-21 19:06:53,531 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2024.200.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2024/2024200/2024.200.00 done. INFO 2025-10-21 19:06:53,774 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2024.200.00/seabird25p.nc /Volumes/AUVCTD/missionnetcdfs/2024/2024200/2024.200.00 done. INFO 2025-10-21 19:06:53,879 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2024.200.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2024/2024200/2024.200.00 done. INFO 2025-10-21 19:06:53,879 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-10-21 19:06:53,880 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2024.200.00/i2map_2024.200.00_processing.log /Volumes/AUVCTD/surveys/2024/netcdf