INFO 2025-06-27 10:14:20,065 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2015 --end_year 2025 --num_cores 1 -v --noinput --clobber INFO 2025-06-27 10:14:20,065 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Monterey Bay Diamond Mission - 20524G Biolume and LISST payloads removed, noticed the AUV has a slight roll/list post the reballast. - ctdToUse = ctd1 INFO 2025-06-27 10:14:20,065 process.py process_mission():449 [1] Processing Monterey Bay Diamond mission 2024.205.00 by user docker_user on host 355841a7028c INFO 2025-06-27 10:14:20,065 process.py download_process():165 [1] Download and processing steps for 2024.205.00 INFO 2025-06-27 10:14:20,065 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2024/2024205/2024.205.00 INFO 2025-06-27 10:14:20,065 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2024/2024205/2024.205.00 to /data/auv_data/dorado/missionlogs/2024.205.00 INFO 2025-06-27 10:14:32,044 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2024.205.00 INFO 2025-06-27 10:14:32,044 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2024.205.00/ctdDriver.log (29567622 bytes) INFO 2025-06-27 10:14:34,304 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2024.205.00/ctdDriver2.log (29555325 bytes) INFO 2025-06-27 10:14:36,446 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2024.205.00/gps.log (1662548 bytes) INFO 2025-06-27 10:14:36,624 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2024.205.00/hydroscatlog.log (25864546 bytes) INFO 2025-06-27 10:14:39,340 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2024.205.00/navigation.log (149334004 bytes) INFO 2025-06-27 10:14:50,593 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2024.205.00/parosci.log (36788486 bytes) INFO 2025-06-27 10:14:53,750 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2024.205.00/FLBBCD2K.log (28722555 bytes) INFO 2025-06-27 10:14:57,481 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2024.205.00/FLBBCD2K.log: [ 2 4 7 12 12742 12743] INFO 2025-06-27 10:14:57,594 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2024.205.00/tailCone.log (18484167 bytes) INFO 2025-06-27 10:14:59,925 logs2netcdfs.py download_process_logs():807 [1] Time to process: 27.88 seconds INFO 2025-06-27 10:14:59,926 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2024.205.00/lopc.bin (54208137 bytes) INFO 2025-06-27 10:14:59,926 lopcToNetCDF.py main():2297 [1] Processing begun: Fri Jun 27 10:14:59 2025 INFO 2025-06-27 10:14:59,926 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2024.205.00/parosci.nc INFO 2025-06-27 10:14:59,926 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-27 10:14:59,926 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2024.205.00/parosci.nc INFO 2025-06-27 10:14:59,930 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1721762531.9, sensor_off_time = 1721839542.0 INFO 2025-06-27 10:14:59,930 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 77010 seconds. Expecting to read 154020 L frames from the lopc.bin file. INFO 2025-06-27 10:14:59,931 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 154020 records from the lopc.bin file. INFO 2025-06-27 10:15:00,836 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2024-07-23 19:22:11 Z and endTime = 2024-07-24 16:45:42 Z with 154020 records expected to be read from lopc.bin INFO 2025-06-27 10:15:00,836 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2024.205.00/lopc.bin INFO 2025-06-27 10:15:00,836 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2024.205.00/lopc.nc INFO 2025-06-27 10:15:00,836 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2024.205.00/lopc.nc INFO 2025-06-27 10:15:00,837 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2024.205.00 INFO 2025-06-27 10:15:00,837 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 INFO 2025-06-27 10:15:00,887 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-27 10:15:00,888 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-27 10:15:00,888 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ INFO 2025-06-27 10:15:06,392 lopcToNetCDF.py unpackLOPCbin():1013 [1] 10000 10000 13607 0 0 0 0 0 5.6 seconds, last L Frame: 154020 INFO 2025-06-27 10:15:13,592 lopcToNetCDF.py unpackLOPCbin():1013 [1] 20000 20000 33971 0 0 0 0 0 7.2 seconds, last L Frame: 154020 INFO 2025-06-27 10:15:17,432 lopcToNetCDF.py unpackLOPCbin():1013 [1] 30000 30000 42028 0 0 0 0 0 3.8 seconds, last L Frame: 154020 INFO 2025-06-27 10:15:21,719 lopcToNetCDF.py unpackLOPCbin():1013 [1] 40000 40000 51573 0 0 0 0 0 4.3 seconds, last L Frame: 154020 INFO 2025-06-27 10:15:25,492 lopcToNetCDF.py unpackLOPCbin():1013 [1] 50000 50000 58426 0 0 0 0 0 3.8 seconds, last L Frame: 154020 INFO 2025-06-27 10:15:29,033 lopcToNetCDF.py unpackLOPCbin():1013 [1] 60000 60000 64775 0 0 0 0 0 3.5 seconds, last L Frame: 154020 INFO 2025-06-27 10:15:32,593 lopcToNetCDF.py unpackLOPCbin():1013 [1] 70000 4464 71449 0 0 0 0 0 3.6 seconds, last L Frame: 154020 INFO 2025-06-27 10:15:36,109 lopcToNetCDF.py unpackLOPCbin():1013 [1] 80000 14464 78055 0 0 0 0 0 3.5 seconds, last L Frame: 154020 INFO 2025-06-27 10:15:39,737 lopcToNetCDF.py unpackLOPCbin():1013 [1] 90000 24464 85029 0 0 0 0 0 3.6 seconds, last L Frame: 154020 INFO 2025-06-27 10:15:43,455 lopcToNetCDF.py unpackLOPCbin():1013 [1] 100000 34464 92246 0 0 0 0 0 3.7 seconds, last L Frame: 154020 INFO 2025-06-27 10:15:47,135 lopcToNetCDF.py unpackLOPCbin():1013 [1] 110000 44464 99550 0 0 0 0 0 3.7 seconds, last L Frame: 154020 INFO 2025-06-27 10:15:51,042 lopcToNetCDF.py unpackLOPCbin():1013 [1] 120000 54464 107036 0 0 0 0 0 3.9 seconds, last L Frame: 154020 INFO 2025-06-27 10:15:54,750 lopcToNetCDF.py unpackLOPCbin():1013 [1] 130000 64464 113104 0 0 0 0 0 3.7 seconds, last L Frame: 154020 INFO 2025-06-27 10:15:58,330 lopcToNetCDF.py unpackLOPCbin():1013 [1] 140000 8928 117840 0 0 0 0 0 3.6 seconds, last L Frame: 154020 INFO 2025-06-27 10:16:01,830 lopcToNetCDF.py unpackLOPCbin():1013 [1] 150000 18928 122656 0 0 0 0 0 3.5 seconds, last L Frame: 154020 INFO 2025-06-27 10:16:03,089 lopcToNetCDF.py main():2345 [1] >>> Done reading file. INFO 2025-06-27 10:16:03,089 lopcToNetCDF.py main():2346 [1] lFrameCount = 154037, mFrameCount = 123715 INFO 2025-06-27 10:16:03,089 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2024.205.00/parosci.nc INFO 2025-06-27 10:16:03,089 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-27 10:16:03,089 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2024.205.00/parosci.nc INFO 2025-06-27 10:16:03,093 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1721762531.9, sensor_off_time = 1721839542.0 INFO 2025-06-27 10:16:03,093 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 77010 seconds. Expecting to read 154020 L frames from the lopc.bin file. INFO 2025-06-27 10:16:03,093 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 154020 records from the lopc.bin file. INFO 2025-06-27 10:16:03,093 lopcToNetCDF.py constructTimestampList():1340 [1] Calling correctSampleCountList() with sampleCountList[0] = 1 and len(sampleCountList) = 154037 INFO 2025-06-27 10:16:03,106 lopcToNetCDF.py correctSampleCountList():1737 [1] Found overflows at indices: [ 65535 131071] INFO 2025-06-27 10:16:03,106 lopcToNetCDF.py correctSampleCountList():1740 [1] Assigning values from slice starting at index 65535, i = 1 INFO 2025-06-27 10:16:03,110 lopcToNetCDF.py correctSampleCountList():1740 [1] Assigning values from slice starting at index 131071, i = 2 INFO 2025-06-27 10:16:03,111 lopcToNetCDF.py correctSampleCountList():1745 [1] Original sampleCountList = [ 1 2 3 ... 154037 154038 154039] INFO 2025-06-27 10:16:03,111 lopcToNetCDF.py correctSampleCountList():1746 [1] Found 0 0 values at indices: [] INFO 2025-06-27 10:16:03,112 lopcToNetCDF.py correctSampleCountList():1779 [1] Found 0 stuck values at indices: [] INFO 2025-06-27 10:16:03,112 lopcToNetCDF.py deSpike():1588 [1] d_sampleCountList = [1 1 1 ... 1 1 1] INFO 2025-06-27 10:16:03,112 lopcToNetCDF.py deSpike():1590 [1] Found 0 spike indicators at indices: [] INFO 2025-06-27 10:16:03,113 lopcToNetCDF.py correctSampleCountList():1805 [1] After despike() sampleCountList = [ 1 2 3 ... 154037 154038 154039] INFO 2025-06-27 10:16:03,113 lopcToNetCDF.py constructTimestampList():1347 [1] correctSampleCountList() returned correctedSampleCountList = [ 1 2 3 ... 154037 154038 154039] with len(correctedSampleCountList) = 154037 INFO 2025-06-27 10:16:03,113 lopcToNetCDF.py constructTimestampList():1358 [1] Subtracting 1 from all values of correctedSampleCountList INFO 2025-06-27 10:16:03,113 lopcToNetCDF.py constructTimestampList():1363 [1] Constructing timestampArray from instrument corrected sampleCount and constant deltaT = 0.500000 INFO 2025-06-27 10:16:03,113 lopcToNetCDF.py constructTimestampList():1368 [1] New re-zeroed correctedSampleCountList = [0.00000e+00 5.00000e-01 1.00000e+00 ... 7.70180e+04 7.70185e+04 7.70190e+04] INFO 2025-06-27 10:16:03,114 lopcToNetCDF.py constructTimestampList():1379 [1] timestampArray = [1.72176253e+09 1.72176253e+09 1.72176253e+09 ... 1.72183955e+09 1.72183955e+09 1.72183955e+09] INFO 2025-06-27 10:16:03,115 lopcToNetCDF.py constructTimestampList():1380 [1] timestampArray[:2] = [1721762531.9 1721762532.4, ..., timestampArray[-2:] = 1721839550.4 1721839550.9] INFO 2025-06-27 10:16:03,269 lopcToNetCDF.py constructTimestampList():1389 [1] timestampList[:2] = [np.float64(1721762531.8516855), np.float64(1721762532.3516855)], ..., timestampList[-2:] = [np.float64(1721839550.3516855), np.float64(1721839550.8516855)]] INFO 2025-06-27 10:16:03,269 lopcToNetCDF.py constructTimestampList():1394 [1] Subsampling correctedSampleCountList (len = 154037) according to what got written to the netCDF file by the binning interval INFO 2025-06-27 10:16:03,269 lopcToNetCDF.py constructTimestampList():1399 [1] lFrameCountWrittenList[:2] = [20, 41], ... lFrameCountWrittenList[-2:] = [154013, 154034] INFO 2025-06-27 10:16:03,270 lopcToNetCDF.py constructTimestampList():1420 [1] len(subSampledCorrectedSampleCountList) = 7335 INFO 2025-06-27 10:16:03,270 lopcToNetCDF.py constructTimestampList():1439 [1] len(timestampList) = 154037 INFO 2025-06-27 10:16:03,270 lopcToNetCDF.py constructTimestampList():1440 [1] timestampList[:2] = [np.float64(1721762531.8516855), np.float64(1721762532.3516855)], ..., timestampList[-2:] = [np.float64(1721839550.3516855), np.float64(1721839550.8516855)]] INFO 2025-06-27 10:16:03,270 lopcToNetCDF.py constructTimestampList():1446 [1] Subsampling timestampList (len = 154037) according to what got written to the netCDF file by the binning interval INFO 2025-06-27 10:16:03,272 lopcToNetCDF.py constructTimestampList():1457 [1] Taking indices [[np.int32(19), np.int32(40)] ... [np.int32(154012), np.int32(154033)]] from timestampList to create subSampledTimestampList INFO 2025-06-27 10:16:03,280 lopcToNetCDF.py constructTimestampList():1463 [1] len(subSampledTimestampList) = 7335 INFO 2025-06-27 10:16:03,281 lopcToNetCDF.py constructTimestampList():1477 [1] Finding elements of cFrameEsecsList that != -9999 INFO 2025-06-27 10:16:03,320 lopcToNetCDF.py closeNetCDFFile():2096 [1] Writing time axis for len(tsList) = 7335 INFO 2025-06-27 10:16:03,321 lopcToNetCDF.py closeNetCDFFile():2099 [1] tsList[:1] = [np.float64(1721762541.3516855)], ..., tsList[-2:] = [np.float64(1721839538.8516855), np.float64(1721839549.3516855)] INFO 2025-06-27 10:16:03,321 lopcToNetCDF.py closeNetCDFFile():2100 [1] Begin time = 2024-07-23 19:22:21 Z INFO 2025-06-27 10:16:03,321 lopcToNetCDF.py closeNetCDFFile():2103 [1] End time = 2024-07-24 16:45:49 Z INFO 2025-06-27 10:16:03,321 lopcToNetCDF.py closeNetCDFFile():2107 [1] Writing time axis for len(cFrameEsecsList) = 7335 INFO 2025-06-27 10:16:03,321 lopcToNetCDF.py closeNetCDFFile():2111 [1] cFrameEsecsList[:1] = [1.72176253e+09], ..., cFrameEsecsList[-2:] = [1.72177399e+09 1.72177400e+09] INFO 2025-06-27 10:16:03,321 lopcToNetCDF.py closeNetCDFFile():2116 [1] Begin time = 2024-07-23 19:22:11 Z INFO 2025-06-27 10:16:03,321 lopcToNetCDF.py closeNetCDFFile():2120 [1] End time = 2024-07-23 22:33:20 Z INFO 2025-06-27 10:16:03,326 lopcToNetCDF.py main():2381 [1] Created file: /data/auv_data/dorado/missionnetcdfs/2024.205.00/lopc.nc INFO 2025-06-27 10:16:03,326 lopcToNetCDF.py main():2384 [1] Processing finished: Fri Jun 27 10:16:03 2025 Elapsed processing time from start of processing = 63 seconds INFO 2025-06-27 10:16:03,331 process.py calibrate():227 [1] Calibration steps for 2024.205.00 INFO 2025-06-27 10:16:03,888 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-27 10:16:03,890 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-27 10:16:04,903 calibrate.py _nudge_pos():1806 [1] 138: 0.120 0.0005630 -0.0018231 5135 17.11 4.882 -19.741 2024-07-23T19:41:22.252877824 INFO 2025-06-27 10:16:14,905 calibrate.py _nudge_pos():1806 [1] 1147: 0.080 0.0011783 -0.0000613 6846 22.82 7.663 -0.498 2024-07-23T20:20:59.450028544 INFO 2025-06-27 10:16:18,310 calibrate.py _nudge_pos():1806 [1] 1491: 0.040 0.0012823 -0.0011026 7091 23.63 8.053 -8.645 2024-07-23T20:50:20.649378048 INFO 2025-06-27 10:16:18,533 calibrate.py _nudge_pos():1806 [1] 1513: 0.090 0.0019069 -0.0005160 6026 20.08 14.095 -4.761 2024-07-23T21:10:46.655390976 INFO 2025-06-27 10:16:22,409 calibrate.py _nudge_pos():1806 [1] 1898: 0.020 0.0021181 -0.0003546 5996 19.98 15.738 -3.288 2024-07-23T21:37:09.856934144 INFO 2025-06-27 10:16:22,580 calibrate.py _nudge_pos():1806 [1] 1915: 0.100 0.0020784 -0.0005193 6666 22.22 13.894 -4.331 2024-07-23T21:59:38.854521600 INFO 2025-06-27 10:16:26,753 calibrate.py _nudge_pos():1806 [1] 2333: 0.040 0.0021344 -0.0005697 7256 24.18 13.111 -4.366 2024-07-23T22:30:47.056540928 INFO 2025-06-27 10:16:27,216 calibrate.py _nudge_pos():1806 [1] 2379: 0.160 0.0022012 -0.0006149 7410 24.70 13.243 -4.613 2024-07-23T22:56:14.051934464 INFO 2025-06-27 10:16:30,606 calibrate.py _nudge_pos():1806 [1] 2711: 0.050 -0.0000259 -0.0000559 16 0.05 -77.031 -207.213 2024-07-23T23:01:48.259040000 INFO 2025-06-27 10:16:30,778 calibrate.py _nudge_pos():1806 [1] 2728: 0.070 0.0021339 -0.0005560 7101 23.67 13.400 -4.353 2024-07-23T23:25:44.250667520 INFO 2025-06-27 10:16:32,631 calibrate.py _nudge_pos():1806 [1] 2911: 0.190 0.0020302 -0.0003463 6890 22.96 13.142 -2.795 2024-07-23T23:51:44.253800192 INFO 2025-06-27 10:16:36,315 calibrate.py _nudge_pos():1806 [1] 3262: 0.130 0.0007326 0.0001491 8990 29.96 3.634 0.922 2024-07-24T00:27:32.456638208 INFO 2025-06-27 10:16:36,656 calibrate.py _nudge_pos():1806 [1] 3295: 0.050 0.0007567 -0.0000247 7496 24.98 4.501 -0.183 2024-07-24T00:53:03.651744000 INFO 2025-06-27 10:16:40,635 calibrate.py _nudge_pos():1806 [1] 3678: 0.080 -0.0000001 0.0000080 15 0.05 -0.264 31.576 2024-07-24T00:59:28.655369472 INFO 2025-06-27 10:16:40,687 calibrate.py _nudge_pos():1806 [1] 3683: 0.180 0.0006018 -0.0000096 7985 26.61 3.360 -0.067 2024-07-24T01:26:09.655693568 INFO 2025-06-27 10:16:41,274 calibrate.py _nudge_pos():1806 [1] 3740: 0.090 0.0003956 0.0000157 6550 21.83 2.692 0.133 2024-07-24T01:48:55.852102400 INFO 2025-06-27 10:16:44,946 calibrate.py _nudge_pos():1806 [1] 4091: 0.050 0.0007940 0.0003177 7721 25.73 4.583 2.288 2024-07-24T02:20:30.052340992 INFO 2025-06-27 10:16:45,177 calibrate.py _nudge_pos():1806 [1] 4113: 0.120 0.0025425 0.0029378 7625 25.41 14.857 21.421 2024-07-24T02:46:16.056432384 INFO 2025-06-27 10:16:49,256 calibrate.py _nudge_pos():1806 [1] 4499: 0.060 0.0014345 0.0029278 7416 24.72 8.618 21.950 2024-07-24T03:17:24.258451968 INFO 2025-06-27 10:16:49,708 calibrate.py _nudge_pos():1806 [1] 4541: 0.180 0.0008132 0.0019943 7215 24.05 5.021 15.368 2024-07-24T03:42:08.256791040 INFO 2025-06-27 10:16:53,956 calibrate.py _nudge_pos():1806 [1] 4948: 0.090 0.0007366 0.0012150 5355 17.85 6.128 12.615 2024-07-24T04:06:45.455596032 INFO 2025-06-27 10:16:58,429 calibrate.py _nudge_pos():1806 [1] 5369: 0.030 0.0034473 0.0000853 7116 23.72 21.574 0.666 2024-07-24T04:37:28.649328384 INFO 2025-06-27 10:16:58,661 calibrate.py _nudge_pos():1806 [1] 5391: 0.110 0.0027278 0.0005569 7381 24.60 16.454 4.195 2024-07-24T05:02:25.656776448 INFO 2025-06-27 10:17:02,458 calibrate.py _nudge_pos():1806 [1] 5751: 0.060 0.0025905 0.0003408 7296 24.32 15.804 2.597 2024-07-24T05:32:43.852221440 INFO 2025-06-27 10:17:02,939 calibrate.py _nudge_pos():1806 [1] 5796: 0.150 0.0031499 0.0001665 7225 24.08 19.401 1.281 2024-07-24T05:57:32.850218240 INFO 2025-06-27 10:17:06,857 calibrate.py _nudge_pos():1806 [1] 6171: 0.080 0.0042521 -0.0013036 6970 23.23 27.143 -10.398 2024-07-24T06:27:01.059087616 INFO 2025-06-27 10:17:07,088 calibrate.py _nudge_pos():1806 [1] 6193: 0.010 0.0045740 -0.0009596 7951 26.50 25.588 -6.710 2024-07-24T06:53:52.258713088 INFO 2025-06-27 10:17:10,730 calibrate.py _nudge_pos():1806 [1] 6540: 0.160 0.0041924 -0.0007721 7575 25.25 24.612 -5.667 2024-07-24T07:24:53.251226112 INFO 2025-06-27 10:17:11,313 calibrate.py _nudge_pos():1806 [1] 6595: 0.040 0.0039867 -0.0004988 7376 24.58 24.030 -3.760 2024-07-24T07:50:22.456468224 INFO 2025-06-27 10:17:11,399 calibrate.py _nudge_pos():1806 [1] 6603: 0.030 0.0000165 0.0000132 35 0.11 21.523 21.556 2024-07-24T07:50:36.455509504 INFO 2025-06-27 10:17:15,657 calibrate.py _nudge_pos():1806 [1] 7003: 0.190 0.0005956 0.0002782 6590 21.96 4.019 2.347 2024-07-24T08:19:13.457886720 INFO 2025-06-27 10:17:16,190 calibrate.py _nudge_pos():1806 [1] 7053: 0.080 0.0005660 0.0004445 7331 24.43 3.434 3.371 2024-07-24T08:44:28.654088704 INFO 2025-06-27 10:17:21,234 calibrate.py _nudge_pos():1806 [1] 7533: 0.040 0.0004455 0.0001976 6410 21.37 3.091 1.713 2024-07-24T09:13:49.853438208 INFO 2025-06-27 10:17:21,949 calibrate.py _nudge_pos():1806 [1] 7601: 0.110 0.0005106 0.0004147 7230 24.10 3.142 3.189 2024-07-24T09:39:02.849790720 INFO 2025-06-27 10:17:25,713 calibrate.py _nudge_pos():1806 [1] 7952: 0.040 0.0005318 0.0004146 7951 26.50 2.976 2.899 2024-07-24T10:11:23.056877568 INFO 2025-06-27 10:17:26,318 calibrate.py _nudge_pos():1806 [1] 8008: 0.150 0.0004951 0.0003422 7129 23.76 3.091 2.669 2024-07-24T10:36:04.055422208 INFO 2025-06-27 10:17:30,344 calibrate.py _nudge_pos():1806 [1] 8386: 0.090 0.0000058 0.0003413 6851 22.83 0.038 2.770 2024-07-24T11:05:11.255730944 INFO 2025-06-27 10:17:34,336 calibrate.py _nudge_pos():1806 [1] 8765: 0.020 -0.0000883 0.0004686 7196 23.98 -0.546 3.621 2024-07-24T11:35:28.451244288 INFO 2025-06-27 10:17:47,777 calibrate.py _nudge_pos():1806 [1] 10017: 0.180 0.0003799 -0.0027905 6034 20.11 2.802 -25.709 2024-07-24T12:16:26.452859904 INFO 2025-06-27 10:18:01,604 calibrate.py _nudge_pos():1806 [1] 11314: 0.180 0.0013759 -0.0023963 5145 17.15 11.905 -25.896 2024-07-24T12:55:11.653572608 INFO 2025-06-27 10:18:15,370 calibrate.py _nudge_pos():1806 [1] 12600: 0.090 0.0000222 -0.0000779 3880 12.93 0.254 -1.116 2024-07-24T13:29:32.852370688 INFO 2025-06-27 10:18:29,081 calibrate.py _nudge_pos():1806 [1] 13879: 0.040 0.0004989 -0.0017034 4341 14.47 5.117 -21.819 2024-07-24T14:05:19.055345664 INFO 2025-06-27 10:19:08,638 calibrate.py _nudge_pos():1806 [1] 17526: 0.140 0.0006482 0.0001017 2120 7.06 13.616 2.668 2024-07-24T15:13:09.256517888 INFO 2025-06-27 10:20:09,183 calibrate.py _nudge_pos():1862 [1] 23031: - - - 2 0.00 - - INFO 2025-06-27 10:20:09,183 calibrate.py _nudge_pos():1868 [1] Points in final series = 383867 INFO 2025-06-27 10:20:10,348 calibrate.py _hs2_process():2400 [1] Number of bad hs2 points: 1 of 307899 INFO 2025-06-27 10:20:12,651 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: -9 seconds, d_end_time_diff: -1 seconds INFO 2025-06-27 10:20:15,496 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 9 seconds, d_end_time_diff: 0 seconds INFO 2025-06-27 10:20:17,801 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 9 seconds, d_end_time_diff: 0 seconds INFO 2025-06-27 10:20:17,805 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2024.205.00/ctd1.nc INFO 2025-06-27 10:20:17,807 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd1_salinity values to NaN INFO 2025-06-27 10:20:17,808 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-27 10:20:17,808 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-27 10:20:20,545 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 41 seconds, d_end_time_diff: -1 seconds INFO 2025-06-27 10:20:22,876 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 41 seconds, d_end_time_diff: -1 seconds INFO 2025-06-27 10:20:22,880 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2024.205.00/ctd2.nc INFO 2025-06-27 10:20:22,882 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-27 10:20:22,882 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-27 10:20:22,883 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-27 10:20:22,883 calibrate.py process_logs():3542 [1] Error processing isus: isus has no orig_data - likely a missing or zero-sized .log file in missionlogs/2024.205.00 ERROR 2025-06-27 10:20:22,883 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2024.205.00 INFO 2025-06-27 10:21:00,570 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2024.205.00/dorado_2024.205.00_cal.nc INFO 2025-06-27 10:21:00,855 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_par, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, ecopuck_bbp700, ecopuck_cdom, ecopuck_chl, ecopuck_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, lopc_LCcount, lopc_countListSum, lopc_flowSpeed, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-27 10:21:00,865 process.py align():251 [1] Alignment steps for 2024.205.00 INFO 2025-06-27 10:21:00,920 align.py process_cal():139 [1] Processing dorado_2024.205.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2024.205.00 INFO 2025-06-27 10:21:01,018 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-27 10:21:01,028 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-27 10:21:01,278 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-27 10:21:01,293 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-27 10:21:01,528 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-27 10:21:01,545 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-27 10:21:01,688 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-27 10:21:01,688 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-27 10:21:01,788 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-27 10:21:01,802 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-27 10:21:02,032 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2024.205.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 10:21:02,044 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 10:21:02,246 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2024.205.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 10:21:02,257 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 10:21:02,460 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2024.205.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 10:21:02,472 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 10:21:02,673 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2024.205.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 10:21:02,684 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 10:21:02,889 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2024.205.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 10:21:02,900 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 10:21:03,103 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2024.205.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 10:21:03,114 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 10:21:03,316 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2024.205.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 10:21:03,327 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 10:21:03,531 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2024.205.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 10:21:03,542 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 10:21:03,745 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2024.205.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 10:21:03,756 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 10:21:03,958 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2024.205.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 10:21:03,971 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 10:21:04,175 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2024.205.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 10:21:04,186 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 10:21:04,388 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2024.205.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 10:21:04,399 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 10:21:04,601 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2024.205.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 10:21:04,612 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 10:21:04,813 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2024.205.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 10:21:04,822 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 10:21:05,025 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2024.205.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 10:21:05,036 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 10:21:05,240 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2024.205.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 10:21:05,252 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 10:21:05,457 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2024.205.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 10:21:05,468 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 10:21:05,668 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2024.205.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 10:21:05,679 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 10:21:05,882 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2024.205.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 10:21:05,893 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 10:21:06,098 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2024.205.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 10:21:06,109 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 10:21:06,314 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2024.205.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 10:21:06,325 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 10:21:06,528 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2024.205.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 10:21:06,537 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 10:21:06,740 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2024.205.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 10:21:06,751 align.py process_cal():249 [1] ctd2_par: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 10:21:07,001 align.py process_cal():249 [1] lopc_countListSum: instrument_sample_rate_hz = 0.10 INFO 2025-06-27 10:21:07,142 align.py process_cal():249 [1] lopc_transCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-27 10:21:07,280 align.py process_cal():249 [1] lopc_nonTransCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-27 10:21:07,416 align.py process_cal():249 [1] lopc_LCcount: instrument_sample_rate_hz = 0.10 INFO 2025-06-27 10:21:07,551 align.py process_cal():249 [1] lopc_flowSpeed: instrument_sample_rate_hz = 0.10 INFO 2025-06-27 10:21:07,704 align.py process_cal():249 [1] ecopuck_bbp700: instrument_sample_rate_hz = 10.36 INFO 2025-06-27 10:21:08,202 align.py process_cal():249 [1] ecopuck_cdom: instrument_sample_rate_hz = 10.36 INFO 2025-06-27 10:21:08,639 align.py process_cal():249 [1] ecopuck_chl: instrument_sample_rate_hz = 10.36 INFO 2025-06-27 10:21:09,111 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-27 10:21:09,264 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2024.205.00/dorado_2024.205.00_align.nc INFO 2025-06-27 10:21:09,496 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_par, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, ecopuck_bbp700, ecopuck_cdom, ecopuck_chl, ecopuck_depth, ecopuck_latitude, ecopuck_longitude, ecopuck_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, lopc_LCcount, lopc_countListSum, lopc_depth, lopc_flowSpeed, lopc_latitude, lopc_longitude, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-27 10:21:09,499 process.py resample():273 [1] Resampling steps for 2024.205.00 INFO 2025-06-27 10:21:09,500 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-27 10:21:09,544 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2024.205.00/dorado_2024.205.00_align.nc mission netCDF file INFO 2025-06-27 10:21:09,554 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2024.205.00/dorado_2024.205.00_align.nc mission netCDF file INFO 2025-06-27 10:21:09,557 resample.py get_mission_start_end():1145 [1] navigation: 2024-07-23T19:22:47.099270912 to 2024-07-24T16:45:42.056125184 (0 days 00:00:07.295560448 before mission_end) INFO 2025-06-27 10:21:09,560 resample.py get_mission_start_end():1145 [1] hs2 : 2024-07-23T19:22:03.232275968 to 2024-07-24T16:45:41.876137472 (0 days 00:00:07.475548160 before mission_end) INFO 2025-06-27 10:21:09,562 resample.py get_mission_start_end():1145 [1] ctd1 : 2024-07-23T19:22:21.181046528 to 2024-07-24T16:45:42.106121728 (0 days 00:00:07.245563904 before mission_end) INFO 2025-06-27 10:21:09,565 resample.py get_mission_start_end():1145 [1] ctd2 : 2024-07-23T19:22:53.188853760 to 2024-07-24T16:45:41.886136832 (0 days 00:00:07.465548800 before mission_end) INFO 2025-06-27 10:21:09,567 resample.py get_mission_start_end():1145 [1] lopc : 2024-07-23T19:22:21.351685632 to 2024-07-24T16:45:49.351685632 (0 days 00:00:00 before mission_end) INFO 2025-06-27 10:21:09,571 resample.py get_mission_start_end():1145 [1] ecopuck : 2024-07-23T19:21:56.942706944 to 2024-07-24T16:45:42.046125824 (0 days 00:00:07.305559808 before mission_end) INFO 2025-06-27 10:21:09,574 resample.py get_mission_start_end():1145 [1] tailcone : 2024-07-23T19:22:06.972019968 to 2024-07-24T16:45:41.966131200 (0 days 00:00:07.385554432 before mission_end) INFO 2025-06-27 10:21:09,575 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2024.205.00/dorado_2024.205.00_align.nc mission netCDF file INFO 2025-06-27 10:21:09,575 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-27 10:21:10,334 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-27 10:21:10,455 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-27 10:21:10,573 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-27 10:21:10,691 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-27 10:21:10,793 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-27 10:21:10,895 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-27 10:21:10,995 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-27 10:21:11,095 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-27 10:21:11,188 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-27 10:21:11,281 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-27 10:21:11,373 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-27 10:21:11,467 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-27 10:21:11,559 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-27 10:21:11,651 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-27 10:21:11,744 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-27 10:21:11,836 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-27 10:21:11,929 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-27 10:21:12,026 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-27 10:21:12,130 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-27 10:21:12,230 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-27 10:21:12,331 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-27 10:21:12,431 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-27 10:21:12,532 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-27 10:21:12,634 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-27 10:21:12,735 resample.py resample_variable():1031 [1] Resampling ctd2_par with frequency 1S following 3 point median filter INFO 2025-06-27 10:21:12,762 resample.py resample_variable():1031 [1] Resampling lopc_countListSum with frequency 1S following 3 point median filter INFO 2025-06-27 10:21:12,778 resample.py resample_variable():1031 [1] Resampling lopc_transCount with frequency 1S following 3 point median filter INFO 2025-06-27 10:21:12,791 resample.py resample_variable():1031 [1] Resampling lopc_nonTransCount with frequency 1S following 3 point median filter INFO 2025-06-27 10:21:12,803 resample.py resample_variable():1031 [1] Resampling lopc_LCcount with frequency 1S following 3 point median filter INFO 2025-06-27 10:21:12,816 resample.py resample_variable():1031 [1] Resampling lopc_flowSpeed with frequency 1S following 3 point median filter INFO 2025-06-27 10:21:13,025 resample.py resample_variable():1031 [1] Resampling ecopuck_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-27 10:21:13,260 resample.py resample_variable():1031 [1] Resampling ecopuck_cdom with frequency 1S following 3 point median filter INFO 2025-06-27 10:21:13,492 resample.py resample_variable():1031 [1] Resampling ecopuck_chl with frequency 1S following 3 point median filter INFO 2025-06-27 10:21:13,624 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-27 10:21:14,170 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2024.205.00/dorado_2024.205.00_1S.nc INFO 2025-06-27 10:21:17,306 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-27 10:21:40,859 create_products.py gulper_odv():522 [1] Wrote 20 Gulper data lines to /data/auv_data/dorado/missionodvs/2024.205.00/dorado_2024.205.00_1S_Gulper.txt INFO 2025-06-27 10:21:40,860 process.py archive():337 [1] Archiving steps for 2024.205.00 INFO 2025-06-27 10:21:40,860 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2024.205.00/dorado_2024.205.00, BASE_PATH = /data/auv_data INFO 2025-06-27 10:21:40,866 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2024.205.00/dorado_2024.205.00 files to /Volumes/AUVCTD/surveys/2024/netcdf INFO 2025-06-27 10:21:40,867 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2024/netcdf/dorado_2024.205.00_1S.nc INFO 2025-06-27 10:21:40,930 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2024.205.00/dorado_2024.205.00_1S.nc /Volumes/AUVCTD/surveys/2024/netcdf done. INFO 2025-06-27 10:21:40,931 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2024/netcdf/dorado_2024.205.00_cal.nc INFO 2025-06-27 10:21:41,327 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2024.205.00/dorado_2024.205.00_cal.nc /Volumes/AUVCTD/surveys/2024/netcdf done. INFO 2025-06-27 10:21:41,328 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2024/netcdf/dorado_2024.205.00_align.nc INFO 2025-06-27 10:21:41,770 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2024.205.00/dorado_2024.205.00_align.nc /Volumes/AUVCTD/surveys/2024/netcdf done. INFO 2025-06-27 10:21:41,866 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2024.205.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2024/2024205/2024.205.00 done. INFO 2025-06-27 10:21:41,968 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2024.205.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2024/2024205/2024.205.00 done. INFO 2025-06-27 10:21:41,983 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2024.205.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2024/2024205/2024.205.00 done. INFO 2025-06-27 10:21:42,074 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2024.205.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2024/2024205/2024.205.00 done. INFO 2025-06-27 10:21:42,522 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2024.205.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2024/2024205/2024.205.00 done. INFO 2025-06-27 10:21:42,644 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2024.205.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2024/2024205/2024.205.00 done. INFO 2025-06-27 10:21:42,746 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2024.205.00/FLBBCD2K.nc /Volumes/AUVCTD/missionnetcdfs/2024/2024205/2024.205.00 done. INFO 2025-06-27 10:21:42,858 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2024.205.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2024/2024205/2024.205.00 done. INFO 2025-06-27 10:21:43,133 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2024.205.00/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2024/2024205/2024.205.00 done. INFO 2025-06-27 10:21:43,133 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-27 10:21:43,137 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2024/odv/dorado_2024.205.00_1S_Gulper.txt INFO 2025-06-27 10:21:43,146 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2024.205.00/dorado_2024.205.00_1S_Gulper.txt /Volumes/AUVCTD/surveys/2024/odv done. INFO 2025-06-27 10:21:43,147 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2024.205.00/dorado_2024.205.00_processing.log /Volumes/AUVCTD/surveys/2024/netcdf