INFO 2025-10-21 18:12:39,525 process.py process_mission():429 [1] commandline = /src/data/process_i2map.py -v --noinput --start_year 2023 --end_year 2023 --start_yd 1 --end_yd 365 --num_cores 1 --clobber INFO 2025-10-21 18:12:39,525 process.py process_mission():449 [1] Processing i2map mission 2023.144.00 by user docker_user on host a6fbce5c76fd INFO 2025-10-21 18:12:39,525 process.py download_process():165 [1] Download and processing steps for 2023.144.00 INFO 2025-10-21 18:12:39,525 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/M3/master/i2MAP/2023/05/20230524/2023.144.00 INFO 2025-10-21 18:12:39,525 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/M3/master/i2MAP/2023/05/20230524/2023.144.00 to /data/auv_data/i2map/missionlogs/2023.144.00 INFO 2025-10-21 18:12:41,741 logs2netcdfs.py download_process_logs():779 [1] Processing mission: i2map 2023.144.00 INFO 2025-10-21 18:12:41,741 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2023.144.00/gps.log (916124 bytes) INFO 2025-10-21 18:12:41,843 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2023.144.00/navigation.log (165974160 bytes) INFO 2025-10-21 18:12:54,866 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2023.144.00/parosci.log (40886294 bytes) INFO 2025-10-21 18:12:58,302 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2023.144.00/seabird25p.log (82039568 bytes) INFO 2025-10-21 18:13:03,997 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2023.144.00/seabird25p.log: [ 1 160565 160566] INFO 2025-10-21 18:13:04,323 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2023.144.00/tailCone.log (20542503 bytes) INFO 2025-10-21 18:13:06,915 logs2netcdfs.py download_process_logs():807 [1] Time to process: 25.17 seconds INFO 2025-10-21 18:13:06,915 process.py calibrate():227 [1] Calibration steps for 2023.144.00 INFO 2025-10-21 18:13:07,486 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-10-21 18:13:07,488 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-10-21 18:13:08,733 calibrate.py _nudge_pos():1806 [1] 151: 0.040 0.0002498 -0.0017809 15206 50.68 0.732 -6.511 2023-05-24T17:27:07.225348608 INFO 2025-10-21 18:13:13,386 calibrate.py _nudge_pos():1806 [1] 579: 0.140 0.0019253 -0.0014486 15685 52.28 5.469 -5.134 2023-05-24T18:26:31.421184512 INFO 2025-10-21 18:13:17,871 calibrate.py _nudge_pos():1806 [1] 995: 0.170 0.0024418 -0.0014682 15411 51.37 7.060 -5.296 2023-05-24T19:24:48.621609984 INFO 2025-10-21 18:13:23,002 calibrate.py _nudge_pos():1806 [1] 1458: 0.200 0.0041137 -0.0015116 15345 51.15 11.946 -5.476 2023-05-24T20:23:41.829568512 INFO 2025-10-21 18:13:34,739 calibrate.py _nudge_pos():1806 [1] 2487: 0.120 0.0034978 -0.0018310 16060 53.53 9.704 -6.338 2023-05-24T21:34:22.229081344 INFO 2025-10-21 18:13:39,641 calibrate.py _nudge_pos():1806 [1] 2917: 0.200 0.0047913 -0.0020230 15811 52.70 13.503 -7.113 2023-05-24T22:34:13.423067904 INFO 2025-10-21 18:13:44,346 calibrate.py _nudge_pos():1806 [1] 3328: 0.040 -0.0000423 0.0000064 30 0.10 -65.056 12.241 2023-05-24T22:41:09.624556032 INFO 2025-10-21 18:13:45,139 calibrate.py _nudge_pos():1806 [1] 3394: 0.050 0.0049901 -0.0032137 16871 56.23 13.180 -10.590 2023-05-24T23:38:28.828954112 INFO 2025-10-21 18:13:50,111 calibrate.py _nudge_pos():1806 [1] 3822: 0.180 0.0041708 -0.0042781 17425 58.08 10.665 -13.648 2023-05-25T00:43:41.020950784 INFO 2025-10-21 18:13:56,004 calibrate.py _nudge_pos():1806 [1] 4333: 0.040 0.0024093 -0.0050490 17487 58.29 6.139 -16.051 2023-05-25T01:50:28.426424832 INFO 2025-10-21 18:14:01,380 calibrate.py _nudge_pos():1806 [1] 4796: 0.130 0.0002839 -0.0047536 17556 58.52 0.721 -15.053 2023-05-25T02:56:42.624173568 INFO 2025-10-21 18:14:06,969 calibrate.py _nudge_pos():1806 [1] 5272: 0.190 -0.0004389 -0.0034869 16981 56.60 -1.152 -11.415 2023-05-25T04:01:13.828977920 INFO 2025-10-21 18:14:11,753 calibrate.py _nudge_pos():1806 [1] 5682: 0.090 0.0000423 -0.0000165 35 0.11 55.293 -26.990 2023-05-25T04:08:10.030466048 INFO 2025-10-21 18:14:12,357 calibrate.py _nudge_pos():1806 [1] 5734: 0.080 -0.0014380 -0.0013535 16486 54.95 -3.887 -4.564 2023-05-25T05:03:58.221099264 INFO 2025-10-21 18:14:25,719 calibrate.py _nudge_pos():1806 [1] 6869: 0.010 -0.0007491 -0.0013976 16192 53.97 -2.061 -4.799 2023-05-25T06:16:50.621569280 INFO 2025-10-21 18:14:31,383 calibrate.py _nudge_pos():1806 [1] 7348: 0.050 0.0002898 -0.0013729 15651 52.17 0.825 -4.877 2023-05-25T07:16:58.824390656 INFO 2025-10-21 18:14:36,502 calibrate.py _nudge_pos():1806 [1] 7772: 0.150 0.0000376 -0.0018279 15622 52.07 0.107 -6.505 2023-05-25T08:16:06.221377024 INFO 2025-10-21 18:14:42,446 calibrate.py _nudge_pos():1806 [1] 8264: 0.170 0.0000721 -0.0027501 16140 53.80 0.199 -9.472 2023-05-25T09:18:05.226607872 INFO 2025-10-21 18:14:48,537 calibrate.py _nudge_pos():1806 [1] 8758: 0.040 0.0007645 -0.0035946 16356 54.52 2.083 -12.218 2023-05-25T10:20:49.628728576 INFO 2025-10-21 18:14:54,550 calibrate.py _nudge_pos():1806 [1] 9251: 0.150 0.0018703 -0.0036938 16966 56.55 4.912 -12.104 2023-05-25T11:25:34.822574592 INFO 2025-10-21 18:15:00,657 calibrate.py _nudge_pos():1806 [1] 9744: 0.020 0.0007112 -0.0051972 17242 57.47 1.838 -16.757 2023-05-25T12:31:15.222638848 INFO 2025-10-21 18:15:06,477 calibrate.py _nudge_pos():1806 [1] 10213: 0.120 -0.0002990 -0.0058590 17441 58.13 -0.764 -18.676 2023-05-25T13:37:11.421620480 INFO 2025-10-21 18:15:19,135 calibrate.py _nudge_pos():1806 [1] 11240: 0.040 -0.0022474 -0.0064527 18317 61.05 -5.467 -19.584 2023-05-25T14:55:20.830373888 INFO 2025-10-21 18:15:25,027 calibrate.py _nudge_pos():1806 [1] 11695: 0.140 -0.0020717 -0.0052201 18231 60.77 -5.064 -15.918 2023-05-25T16:03:41.029491200 INFO 2025-10-21 18:15:38,066 calibrate.py _nudge_pos():1862 [1] 12663: - - - 4 0.01 - - INFO 2025-10-21 18:15:38,066 calibrate.py _nudge_pos():1868 [1] Points in final series = 427155 INFO 2025-10-21 18:16:16,532 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 2510 on port side INFO 2025-10-21 18:16:16,534 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "2510" INFO 2025-10-21 18:16:16,753 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2013_Jan 2014_sep 2016_Jan 2018_apr 2019_Jun 2022_Jun 2025_Jan WARNING 2025-10-21 18:16:16,757 calibrate.py _cal_date_xml_files():1081 [1] Found 8 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2013_Jan INFO 2025-10-21 18:16:16,757 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 18:16:16,762 calibrate.py _cal_date_xml_files():1081 [1] Found 8 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2014_sep INFO 2025-10-21 18:16:16,762 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 18:16:16,768 calibrate.py _cal_date_xml_files():1081 [1] Found 8 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2016_Jan INFO 2025-10-21 18:16:16,768 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 18:16:16,773 calibrate.py _cal_date_xml_files():1081 [1] Found 8 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2018_apr INFO 2025-10-21 18:16:16,774 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 18:16:16,779 calibrate.py _cal_date_xml_files():1081 [1] Found 8 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2019_Jun INFO 2025-10-21 18:16:16,779 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 18:16:16,784 calibrate.py _cal_date_xml_files():1081 [1] Found 8 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2022_Jun INFO 2025-10-21 18:16:16,785 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 18:16:16,790 calibrate.py _cal_date_xml_files():1081 [1] Found 8 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2025_Jan INFO 2025-10-21 18:16:16,790 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 18:16:16,796 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2025_Jan/Oxygen_SBE43_2510.xml has CalibrationDate 2024-12-24 00:00:00+00:00 INFO 2025-10-21 18:16:16,796 calibrate.py _read_oxy_coeffs():1253 [1] Breaking from loop as /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2025_Jan/Oxygen_SBE43_2510.xml is after 2023.144.00 with mission_start=2023-05-24T16:35:21.798084864 INFO 2025-10-21 18:16:16,797 calibrate.py _read_oxy_coeffs():1270 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2025_Jan/Oxygen_SBE43_2510.xml is the first calibration file, but is after 2023.144.00 with mission_start=2023-05-24T16:35:21.798084864 INFO 2025-10-21 18:16:29,162 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_port: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2025_Jan/Oxygen_SBE43_2510.xml file: {'Soc': 0.58626, 'offset': -0.517, 'A': -0.0038384, 'B': 0.00019113, 'C': -3.1968e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.65, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 18:16:29,170 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 3968 on stbd side INFO 2025-10-21 18:16:29,170 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "3968" INFO 2025-10-21 18:16:29,367 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2020_Jul 2025_Jan WARNING 2025-10-21 18:16:29,371 calibrate.py _cal_date_xml_files():1081 [1] Found 3 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul INFO 2025-10-21 18:16:29,372 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 18:16:29,376 calibrate.py _cal_date_xml_files():1081 [1] Found 3 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2025_Jan INFO 2025-10-21 18:16:29,376 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 18:16:29,382 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml has CalibrationDate 2020-06-16 00:00:00+00:00 INFO 2025-10-21 18:16:29,382 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml is just before 2023.144.00 with mission_start=2023-05-24T16:35:21.798084864 INFO 2025-10-21 18:16:41,679 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_stbd: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml file: {'Soc': 0.43332, 'offset': -0.5106, 'A': -0.0037655, 'B': 0.00018802, 'C': -3.038e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.54, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 18:16:58,628 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 71 seconds, d_end_time_diff: 0 seconds INFO 2025-10-21 18:17:03,384 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 71 seconds, d_end_time_diff: 0 seconds INFO 2025-10-21 18:17:03,392 calibrate.py _ctd_process():2919 [1] Performing range checking of ['seabird25p_salinity'] in 2023.144.00/seabird25p.nc WARNING 2025-10-21 18:17:03,395 calibrate.py _range_qc_combined_nc():890 [1] More than 500 (3650) seabird25p_salinity values found outside of range. This may indicate a problem with the seabird25p data. INFO 2025-10-21 18:17:03,396 calibrate.py _range_qc_combined_nc():898 [1] Setting 3650 seabird25p_salinity values to NaN INFO 2025-10-21 18:17:03,396 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('seabird25p_salinity', Range(min=30, max=40))] INFO 2025-10-21 18:17:03,396 calibrate.py _range_qc_combined_nc():936 [1] Done range checking seabird25p INFO 2025-10-21 18:17:03,726 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/i2map/missionnetcdfs/2023.144.00/i2map_2023.144.00_cal.nc INFO 2025-10-21 18:18:06,861 calibrate.py write_netcdf():3512 [1] Data variables written: depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_par, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_propRpm, tailcone_time, time INFO 2025-10-21 18:18:06,865 process.py align():251 [1] Alignment steps for 2023.144.00 INFO 2025-10-21 18:18:06,909 align.py process_cal():139 [1] Processing i2map_2023.144.00_cal.nc from /data/auv_data/i2map/missionnetcdfs/2023.144.00 INFO 2025-10-21 18:18:07,020 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 18:18:07,031 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 18:18:07,307 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 18:18:07,322 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 18:18:07,590 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 18:18:07,609 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 18:18:07,768 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-10-21 18:18:07,769 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-10-21 18:18:07,875 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 18:18:07,889 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 18:18:08,182 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.144.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:18:08,206 align.py process_cal():249 [1] seabird25p_temperature: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:18:08,587 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.144.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:18:08,614 align.py process_cal():249 [1] seabird25p_conductivity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:18:09,004 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.144.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:18:09,030 align.py process_cal():249 [1] seabird25p_salinity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:18:09,410 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.144.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:18:09,436 align.py process_cal():249 [1] seabird25p_temperature_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:18:09,817 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.144.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:18:09,849 align.py process_cal():249 [1] seabird25p_conductivity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:18:10,230 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.144.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:18:10,255 align.py process_cal():249 [1] seabird25p_salinity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:18:10,636 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.144.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:18:10,660 align.py process_cal():249 [1] seabird25p_dissolvedO2_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:18:11,039 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.144.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:18:11,063 align.py process_cal():249 [1] seabird25p_oxygen_mll_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:18:11,442 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.144.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:18:11,465 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:18:11,845 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.144.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:18:11,877 align.py process_cal():249 [1] seabird25p_dissolvedO2_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:18:12,278 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.144.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:18:12,301 align.py process_cal():249 [1] seabird25p_oxygen_mll_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:18:12,681 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.144.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:18:12,705 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:18:13,091 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.144.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:18:13,116 align.py process_cal():249 [1] seabird25p_beam_transmittance: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:18:13,551 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.144.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:18:13,574 align.py process_cal():249 [1] seabird25p_depth: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:18:14,103 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.144.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:18:14,144 align.py process_cal():249 [1] seabird25p_par: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:18:14,717 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 18:18:14,944 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/i2map/missionnetcdfs/2023.144.00/i2map_2023.144.00_align.nc INFO 2025-10-21 18:18:15,134 align.py write_netcdf():342 [1] Data variables written: navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_latitude, seabird25p_longitude, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_par, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-10-21 18:18:15,136 process.py resample():273 [1] Resampling steps for 2023.144.00 INFO 2025-10-21 18:18:15,137 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-10-21 18:18:15,178 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2023.144.00/i2map_2023.144.00_align.nc mission netCDF file INFO 2025-10-21 18:18:15,188 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2023.144.00/i2map_2023.144.00_align.nc mission netCDF file INFO 2025-10-21 18:18:15,191 resample.py get_mission_start_end():1145 [1] navigation: 2023-05-24T16:34:45.450575104 to 2023-05-25T16:20:38.029821952 (0 days 00:00:00 before mission_end) INFO 2025-10-21 18:18:15,197 resample.py get_mission_start_end():1145 [1] seabird25p: 2023-05-24T16:35:21.798084864 to 2023-05-25T16:20:38.009823232 (0 days 00:00:00.019998720 before mission_end) INFO 2025-10-21 18:18:15,202 resample.py get_mission_start_end():1145 [1] tailcone : 2023-05-24T16:34:05.723296768 to 2023-05-25T16:20:37.919829248 (0 days 00:00:00.109992704 before mission_end) INFO 2025-10-21 18:18:15,203 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2023.144.00/i2map_2023.144.00_align.nc mission netCDF file INFO 2025-10-21 18:18:15,204 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-10-21 18:18:16,759 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-10-21 18:18:16,942 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-10-21 18:18:17,136 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-10-21 18:18:17,306 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-10-21 18:18:17,501 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature with frequency 1S following 3 point median filter INFO 2025-10-21 18:18:17,703 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity with frequency 1S following 3 point median filter INFO 2025-10-21 18:18:18,013 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity with frequency 1S following 3 point median filter INFO 2025-10-21 18:18:18,273 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 18:18:18,526 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 18:18:18,737 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 18:18:18,935 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_port with frequency 1S following 3 point median filter INFO 2025-10-21 18:18:19,134 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_port with frequency 1S following 3 point median filter INFO 2025-10-21 18:18:19,335 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_port with frequency 1S following 3 point median filter INFO 2025-10-21 18:18:19,538 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 18:18:19,745 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 18:18:19,952 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 18:18:20,163 resample.py resample_variable():1031 [1] Resampling seabird25p_beam_transmittance with frequency 1S following 3 point median filter INFO 2025-10-21 18:18:20,371 resample.py resample_variable():1031 [1] Resampling seabird25p_par with frequency 1S following 3 point median filter INFO 2025-10-21 18:18:20,511 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-10-21 18:18:21,051 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/i2map/missionnetcdfs/2023.144.00/i2map_2023.144.00_1S.nc INFO 2025-10-21 18:18:21,052 process.py archive():337 [1] Archiving steps for 2023.144.00 INFO 2025-10-21 18:18:21,053 process.py archive():347 [1] nc_file_base = /data/auv_data/i2map/missionnetcdfs/2023.144.00/i2map_2023.144.00, BASE_PATH = /data/auv_data INFO 2025-10-21 18:18:21,055 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/i2map/missionnetcdfs/2023.144.00/i2map_2023.144.00 files to /Volumes/AUVCTD/surveys/2023/netcdf INFO 2025-10-21 18:18:21,057 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2023/netcdf/i2map_2023.144.00_1S.nc INFO 2025-10-21 18:18:21,113 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2023.144.00/i2map_2023.144.00_1S.nc /Volumes/AUVCTD/surveys/2023/netcdf done. INFO 2025-10-21 18:18:21,114 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2023/netcdf/i2map_2023.144.00_cal.nc INFO 2025-10-21 18:18:21,575 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2023.144.00/i2map_2023.144.00_cal.nc /Volumes/AUVCTD/surveys/2023/netcdf done. INFO 2025-10-21 18:18:21,577 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2023/netcdf/i2map_2023.144.00_align.nc INFO 2025-10-21 18:18:21,973 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2023.144.00/i2map_2023.144.00_align.nc /Volumes/AUVCTD/surveys/2023/netcdf done. INFO 2025-10-21 18:18:21,995 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2023.144.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2023/2023144/2023.144.00 done. INFO 2025-10-21 18:18:22,527 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2023.144.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2023/2023144/2023.144.00 done. INFO 2025-10-21 18:18:22,662 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2023.144.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2023/2023144/2023.144.00 done. INFO 2025-10-21 18:18:22,881 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2023.144.00/seabird25p.nc /Volumes/AUVCTD/missionnetcdfs/2023/2023144/2023.144.00 done. INFO 2025-10-21 18:18:22,988 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2023.144.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2023/2023144/2023.144.00 done. INFO 2025-10-21 18:18:22,989 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-10-21 18:18:22,989 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2023.144.00/i2map_2023.144.00_processing.log /Volumes/AUVCTD/surveys/2023/netcdf