INFO 2025-10-21 18:09:30,511 process.py process_mission():429 [1] commandline = /src/data/process_i2map.py -v --noinput --start_year 2023 --end_year 2023 --start_yd 1 --end_yd 365 --num_cores 1 --clobber INFO 2025-10-21 18:09:30,511 process.py process_mission():449 [1] Processing i2map mission 2023.142.02 by user docker_user on host a6fbce5c76fd INFO 2025-10-21 18:09:30,512 process.py download_process():165 [1] Download and processing steps for 2023.142.02 INFO 2025-10-21 18:09:30,512 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/M3/master/i2MAP/2023/05/20230522/2023.142.02 INFO 2025-10-21 18:09:30,513 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/M3/master/i2MAP/2023/05/20230522/2023.142.02 to /data/auv_data/i2map/missionlogs/2023.142.02 INFO 2025-10-21 18:09:32,871 logs2netcdfs.py download_process_logs():779 [1] Processing mission: i2map 2023.142.02 INFO 2025-10-21 18:09:32,871 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2023.142.02/gps.log (793868 bytes) INFO 2025-10-21 18:09:32,987 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2023.142.02/navigation.log (169511168 bytes) INFO 2025-10-21 18:09:46,716 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2023.142.02/parosci.log (41757398 bytes) INFO 2025-10-21 18:09:50,223 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2023.142.02/seabird25p.log (83849888 bytes) INFO 2025-10-21 18:09:56,362 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2023.142.02/tailCone.log (20981463 bytes) INFO 2025-10-21 18:09:58,956 logs2netcdfs.py download_process_logs():807 [1] Time to process: 26.09 seconds INFO 2025-10-21 18:09:58,957 process.py calibrate():227 [1] Calibration steps for 2023.142.02 INFO 2025-10-21 18:09:59,441 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-10-21 18:09:59,443 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-10-21 18:10:00,489 calibrate.py _nudge_pos():1806 [1] 135: 0.190 0.0083339 0.0066532 19505 65.02 19.036 18.962 2023-05-22T18:15:04.148116736 INFO 2025-10-21 18:10:05,514 calibrate.py _nudge_pos():1806 [1] 604: 0.120 0.0100728 0.0055546 22431 74.77 20.007 13.766 2023-05-22T19:37:38.548717056 INFO 2025-10-21 18:10:10,125 calibrate.py _nudge_pos():1806 [1] 1024: 0.150 0.0130271 0.0061006 23151 77.17 25.069 14.649 2023-05-22T21:01:47.942809856 INFO 2025-10-21 18:10:15,112 calibrate.py _nudge_pos():1806 [1] 1461: 0.100 0.0132566 0.0040801 23882 79.60 24.732 9.498 2023-05-22T22:28:40.345735680 INFO 2025-10-21 18:10:27,455 calibrate.py _nudge_pos():1806 [1] 2537: 0.100 0.0112403 0.0038394 24132 80.44 20.753 8.845 2023-05-23T00:07:01.741462528 INFO 2025-10-21 18:10:32,499 calibrate.py _nudge_pos():1806 [1] 2980: 0.070 0.0090501 0.0037442 22971 76.57 17.553 9.061 2023-05-23T01:30:58.146445312 INFO 2025-10-21 18:10:38,223 calibrate.py _nudge_pos():1806 [1] 3473: 0.010 0.0079963 0.0051390 22102 73.67 16.119 12.926 2023-05-23T02:52:50.549922560 INFO 2025-10-21 18:10:44,124 calibrate.py _nudge_pos():1806 [1] 3983: 0.200 0.0065293 0.0068348 22301 74.33 13.045 17.038 2023-05-23T04:15:39.749509120 INFO 2025-10-21 18:10:49,535 calibrate.py _nudge_pos():1806 [1] 4448: 0.150 0.0080205 0.0071514 22470 74.90 15.902 17.692 2023-05-23T05:38:18.149835264 INFO 2025-10-21 18:10:54,501 calibrate.py _nudge_pos():1806 [1] 4862: 0.120 0.0082779 0.0079521 23022 76.74 16.020 19.202 2023-05-23T07:01:55.546120192 INFO 2025-10-21 18:10:59,235 calibrate.py _nudge_pos():1806 [1] 5251: 0.150 -0.0000096 -0.0000067 15 0.05 -30.588 -26.546 2023-05-23T07:08:26.549334528 INFO 2025-10-21 18:11:01,090 calibrate.py _nudge_pos():1806 [1] 5407: 0.190 0.0103796 0.0080666 22837 76.12 20.250 19.637 2023-05-23T08:27:08.945828096 INFO 2025-10-21 18:11:06,251 calibrate.py _nudge_pos():1806 [1] 5830: 0.070 0.0108303 0.0073783 23867 79.55 20.217 17.186 2023-05-23T09:53:44.349918720 INFO 2025-10-21 18:11:20,221 calibrate.py _nudge_pos():1806 [1] 6935: 0.140 0.0091622 0.0047748 23247 77.49 17.560 11.418 2023-05-23T11:29:37.745784064 INFO 2025-10-21 18:11:26,317 calibrate.py _nudge_pos():1806 [1] 7423: 0.050 0.0080670 0.0044843 21862 72.87 16.441 11.403 2023-05-23T12:50:37.142892544 INFO 2025-10-21 18:11:32,370 calibrate.py _nudge_pos():1806 [1] 7918: 0.190 0.0077411 0.0042076 21571 71.90 15.989 10.844 2023-05-23T14:10:45.343508224 INFO 2025-10-21 18:11:37,627 calibrate.py _nudge_pos():1806 [1] 8341: 0.150 0.0079780 0.0039633 21921 73.07 16.216 10.051 2023-05-23T15:30:51.744247296 INFO 2025-10-21 18:11:44,056 calibrate.py _nudge_pos():1806 [1] 8847: 0.050 0.0085247 0.0042808 20857 69.52 18.211 11.410 2023-05-23T16:48:48.143891968 INFO 2025-10-21 18:12:10,936 calibrate.py _nudge_pos():1862 [1] 10964: - - - 4 0.01 - - INFO 2025-10-21 18:12:10,936 calibrate.py _nudge_pos():1868 [1] Points in final series = 436481 INFO 2025-10-21 18:12:12,580 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 2510 on port side INFO 2025-10-21 18:12:12,581 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "2510" INFO 2025-10-21 18:12:12,824 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2013_Jan 2014_sep 2016_Jan 2018_apr 2019_Jun 2022_Jun 2025_Jan WARNING 2025-10-21 18:12:12,829 calibrate.py _cal_date_xml_files():1081 [1] Found 8 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2013_Jan INFO 2025-10-21 18:12:12,829 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 18:12:12,834 calibrate.py _cal_date_xml_files():1081 [1] Found 8 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2014_sep INFO 2025-10-21 18:12:12,834 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 18:12:12,839 calibrate.py _cal_date_xml_files():1081 [1] Found 8 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2016_Jan INFO 2025-10-21 18:12:12,839 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 18:12:12,845 calibrate.py _cal_date_xml_files():1081 [1] Found 8 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2018_apr INFO 2025-10-21 18:12:12,845 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 18:12:12,851 calibrate.py _cal_date_xml_files():1081 [1] Found 8 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2019_Jun INFO 2025-10-21 18:12:12,851 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 18:12:12,857 calibrate.py _cal_date_xml_files():1081 [1] Found 8 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2022_Jun INFO 2025-10-21 18:12:12,857 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 18:12:12,862 calibrate.py _cal_date_xml_files():1081 [1] Found 8 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2025_Jan INFO 2025-10-21 18:12:12,862 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 18:12:12,869 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2025_Jan/Oxygen_SBE43_2510.xml has CalibrationDate 2024-12-24 00:00:00+00:00 INFO 2025-10-21 18:12:12,869 calibrate.py _read_oxy_coeffs():1253 [1] Breaking from loop as /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2025_Jan/Oxygen_SBE43_2510.xml is after 2023.142.02 with mission_start=2023-05-22T17:08:11.752984832 INFO 2025-10-21 18:12:12,869 calibrate.py _read_oxy_coeffs():1270 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2025_Jan/Oxygen_SBE43_2510.xml is the first calibration file, but is after 2023.142.02 with mission_start=2023-05-22T17:08:11.752984832 INFO 2025-10-21 18:12:13,135 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_port: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2025_Jan/Oxygen_SBE43_2510.xml file: {'Soc': 0.58626, 'offset': -0.517, 'A': -0.0038384, 'B': 0.00019113, 'C': -3.1968e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.65, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 18:12:13,143 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 3968 on stbd side INFO 2025-10-21 18:12:13,143 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "3968" INFO 2025-10-21 18:12:13,323 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2020_Jul 2025_Jan WARNING 2025-10-21 18:12:13,327 calibrate.py _cal_date_xml_files():1081 [1] Found 3 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul INFO 2025-10-21 18:12:13,327 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 18:12:13,332 calibrate.py _cal_date_xml_files():1081 [1] Found 3 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2025_Jan INFO 2025-10-21 18:12:13,332 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 18:12:13,338 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml has CalibrationDate 2020-06-16 00:00:00+00:00 INFO 2025-10-21 18:12:13,338 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml is just before 2023.142.02 with mission_start=2023-05-22T17:08:11.752984832 INFO 2025-10-21 18:12:13,601 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_stbd: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml file: {'Soc': 0.43332, 'offset': -0.5106, 'A': -0.0037655, 'B': 0.00018802, 'C': -3.038e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.54, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 18:12:18,595 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 8 seconds, d_end_time_diff: -1 seconds INFO 2025-10-21 18:12:23,512 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 8 seconds, d_end_time_diff: -1 seconds INFO 2025-10-21 18:12:23,521 calibrate.py _ctd_process():2919 [1] Performing range checking of ['seabird25p_salinity'] in 2023.142.02/seabird25p.nc WARNING 2025-10-21 18:12:23,524 calibrate.py _range_qc_combined_nc():890 [1] More than 500 (560) seabird25p_salinity values found outside of range. This may indicate a problem with the seabird25p data. INFO 2025-10-21 18:12:23,524 calibrate.py _range_qc_combined_nc():898 [1] Setting 560 seabird25p_salinity values to NaN INFO 2025-10-21 18:12:23,524 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('seabird25p_salinity', Range(min=30, max=40))] INFO 2025-10-21 18:12:23,524 calibrate.py _range_qc_combined_nc():936 [1] Done range checking seabird25p INFO 2025-10-21 18:12:23,857 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/i2map/missionnetcdfs/2023.142.02/i2map_2023.142.02_cal.nc INFO 2025-10-21 18:12:24,131 calibrate.py write_netcdf():3512 [1] Data variables written: depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_par, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_propRpm, tailcone_time, time INFO 2025-10-21 18:12:24,136 process.py align():251 [1] Alignment steps for 2023.142.02 INFO 2025-10-21 18:12:24,182 align.py process_cal():139 [1] Processing i2map_2023.142.02_cal.nc from /data/auv_data/i2map/missionnetcdfs/2023.142.02 INFO 2025-10-21 18:12:24,296 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 18:12:24,307 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 18:12:24,587 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 18:12:24,602 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 18:12:24,874 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 18:12:24,893 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 18:12:25,055 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-10-21 18:12:25,055 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-10-21 18:12:25,165 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 18:12:25,179 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 18:12:25,478 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.142.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:12:25,503 align.py process_cal():249 [1] seabird25p_temperature: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:12:25,894 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.142.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:12:25,921 align.py process_cal():249 [1] seabird25p_conductivity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:12:26,307 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.142.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:12:26,334 align.py process_cal():249 [1] seabird25p_salinity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:12:26,719 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.142.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:12:26,745 align.py process_cal():249 [1] seabird25p_temperature_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:12:27,140 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.142.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:12:27,166 align.py process_cal():249 [1] seabird25p_conductivity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:12:27,575 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.142.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:12:27,600 align.py process_cal():249 [1] seabird25p_salinity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:12:27,986 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.142.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:12:28,010 align.py process_cal():249 [1] seabird25p_dissolvedO2_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:12:28,395 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.142.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:12:28,419 align.py process_cal():249 [1] seabird25p_oxygen_mll_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:12:28,805 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.142.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:12:28,831 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:12:29,214 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.142.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:12:29,244 align.py process_cal():249 [1] seabird25p_dissolvedO2_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:12:29,628 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.142.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:12:29,650 align.py process_cal():249 [1] seabird25p_oxygen_mll_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:12:30,035 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.142.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:12:30,057 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:12:30,442 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.142.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:12:30,464 align.py process_cal():249 [1] seabird25p_beam_transmittance: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:12:30,847 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.142.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:12:30,867 align.py process_cal():249 [1] seabird25p_depth: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:12:31,251 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.142.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:12:31,280 align.py process_cal():249 [1] seabird25p_par: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:12:31,701 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 18:12:31,877 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/i2map/missionnetcdfs/2023.142.02/i2map_2023.142.02_align.nc INFO 2025-10-21 18:12:32,053 align.py write_netcdf():342 [1] Data variables written: navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_latitude, seabird25p_longitude, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_par, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-10-21 18:12:32,054 process.py resample():273 [1] Resampling steps for 2023.142.02 INFO 2025-10-21 18:12:32,055 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-10-21 18:12:32,084 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2023.142.02/i2map_2023.142.02_align.nc mission netCDF file INFO 2025-10-21 18:12:32,094 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2023.142.02/i2map_2023.142.02_align.nc mission netCDF file INFO 2025-10-21 18:12:32,097 resample.py get_mission_start_end():1145 [1] navigation: 2023-05-22T17:08:39.401090560 to 2023-05-23T17:24:55.145442304 (0 days 00:00:00.029997824 before mission_end) INFO 2025-10-21 18:12:32,103 resample.py get_mission_start_end():1145 [1] seabird25p: 2023-05-22T17:08:11.752984832 to 2023-05-23T17:24:55.175440128 (0 days 00:00:00 before mission_end) INFO 2025-10-21 18:12:32,108 resample.py get_mission_start_end():1145 [1] tailcone : 2023-05-22T17:07:54.204186880 to 2023-05-23T17:24:55.165440768 (0 days 00:00:00.009999360 before mission_end) INFO 2025-10-21 18:12:32,109 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2023.142.02/i2map_2023.142.02_align.nc mission netCDF file INFO 2025-10-21 18:12:32,110 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-10-21 18:12:33,280 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-10-21 18:12:33,417 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-10-21 18:12:33,553 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-10-21 18:12:33,684 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-10-21 18:12:33,882 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature with frequency 1S following 3 point median filter INFO 2025-10-21 18:12:34,088 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity with frequency 1S following 3 point median filter INFO 2025-10-21 18:12:34,311 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity with frequency 1S following 3 point median filter INFO 2025-10-21 18:12:34,516 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 18:12:34,719 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 18:12:34,925 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 18:12:35,129 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_port with frequency 1S following 3 point median filter INFO 2025-10-21 18:12:35,334 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_port with frequency 1S following 3 point median filter INFO 2025-10-21 18:12:35,549 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_port with frequency 1S following 3 point median filter INFO 2025-10-21 18:12:35,767 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 18:12:35,991 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 18:12:36,219 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 18:12:36,443 resample.py resample_variable():1031 [1] Resampling seabird25p_beam_transmittance with frequency 1S following 3 point median filter INFO 2025-10-21 18:12:36,669 resample.py resample_variable():1031 [1] Resampling seabird25p_par with frequency 1S following 3 point median filter INFO 2025-10-21 18:12:36,820 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-10-21 18:12:37,363 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/i2map/missionnetcdfs/2023.142.02/i2map_2023.142.02_1S.nc INFO 2025-10-21 18:12:37,365 process.py archive():337 [1] Archiving steps for 2023.142.02 INFO 2025-10-21 18:12:37,365 process.py archive():347 [1] nc_file_base = /data/auv_data/i2map/missionnetcdfs/2023.142.02/i2map_2023.142.02, BASE_PATH = /data/auv_data INFO 2025-10-21 18:12:37,367 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/i2map/missionnetcdfs/2023.142.02/i2map_2023.142.02 files to /Volumes/AUVCTD/surveys/2023/netcdf INFO 2025-10-21 18:12:37,368 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2023/netcdf/i2map_2023.142.02_1S.nc INFO 2025-10-21 18:12:37,419 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2023.142.02/i2map_2023.142.02_1S.nc /Volumes/AUVCTD/surveys/2023/netcdf done. INFO 2025-10-21 18:12:37,420 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2023/netcdf/i2map_2023.142.02_cal.nc INFO 2025-10-21 18:12:37,833 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2023.142.02/i2map_2023.142.02_cal.nc /Volumes/AUVCTD/surveys/2023/netcdf done. INFO 2025-10-21 18:12:37,834 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2023/netcdf/i2map_2023.142.02_align.nc INFO 2025-10-21 18:12:38,207 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2023.142.02/i2map_2023.142.02_align.nc /Volumes/AUVCTD/surveys/2023/netcdf done. INFO 2025-10-21 18:12:38,222 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2023.142.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2023/2023142/2023.142.02 done. INFO 2025-10-21 18:12:38,649 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2023.142.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2023/2023142/2023.142.02 done. INFO 2025-10-21 18:12:38,768 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2023.142.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2023/2023142/2023.142.02 done. INFO 2025-10-21 18:12:39,027 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2023.142.02/seabird25p.nc /Volumes/AUVCTD/missionnetcdfs/2023/2023142/2023.142.02 done. INFO 2025-10-21 18:12:39,118 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2023.142.02/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2023/2023142/2023.142.02 done. INFO 2025-10-21 18:12:39,119 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-10-21 18:12:39,119 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2023.142.02/i2map_2023.142.02_processing.log /Volumes/AUVCTD/surveys/2023/netcdf