INFO 2025-10-21 18:04:07,126 process.py process_mission():429 [1] commandline = /src/data/process_i2map.py -v --noinput --start_year 2023 --end_year 2023 --start_yd 1 --end_yd 365 --num_cores 1 --clobber INFO 2025-10-21 18:04:07,127 process.py process_mission():449 [1] Processing i2map mission 2023.110.00 by user docker_user on host a6fbce5c76fd INFO 2025-10-21 18:04:07,127 process.py download_process():165 [1] Download and processing steps for 2023.110.00 INFO 2025-10-21 18:04:07,127 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/M3/master/i2MAP/2023/04/20230420/2023.110.00 INFO 2025-10-21 18:04:07,127 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/M3/master/i2MAP/2023/04/20230420/2023.110.00 to /data/auv_data/i2map/missionlogs/2023.110.00 INFO 2025-10-21 18:04:09,507 logs2netcdfs.py download_process_logs():779 [1] Processing mission: i2map 2023.110.00 INFO 2025-10-21 18:04:09,508 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2023.110.00/gps.log (715388 bytes) INFO 2025-10-21 18:04:09,592 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2023.110.00/navigation.log (142807304 bytes) INFO 2025-10-21 18:04:20,784 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2023.110.00/parosci.log (40140326 bytes) INFO 2025-10-21 18:04:24,156 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2023.110.00/parosci.log: [ 52908 52909 371372 738306] INFO 2025-10-21 18:04:24,265 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2023.110.00/seabird25p.log (80580728 bytes) INFO 2025-10-21 18:04:29,952 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2023.110.00/seabird25p.log: [1] INFO 2025-10-21 18:04:30,252 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2023.110.00/tailCone.log (20168155 bytes) INFO 2025-10-21 18:04:32,800 logs2netcdfs.py download_process_logs():807 [1] Time to process: 23.29 seconds INFO 2025-10-21 18:04:32,801 process.py calibrate():227 [1] Calibration steps for 2023.110.00 INFO 2025-10-21 18:04:33,356 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-10-21 18:04:33,359 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-10-21 18:04:36,337 calibrate.py _nudge_pos():1806 [1] 307: 0.010 -0.0011181 0.0053854 32948 109.82 -1.513 9.087 2023-04-20T18:12:37.295204352 INFO 2025-10-21 18:04:36,885 calibrate.py _nudge_pos():1806 [1] 357: 0.060 -0.0000043 0.0000360 4290 14.30 -0.044 0.467 2023-04-20T18:27:45.303001600 INFO 2025-10-21 18:04:37,082 calibrate.py _nudge_pos():1806 [1] 375: 0.050 0.0029220 0.0024734 38683 128.94 3.367 3.555 2023-04-20T20:36:58.901843712 INFO 2025-10-21 18:04:38,047 calibrate.py _nudge_pos():1806 [1] 462: 0.110 0.0002373 0.0004752 3120 10.40 3.392 8.469 2023-04-20T20:48:48.903205376 INFO 2025-10-21 18:04:39,425 calibrate.py _nudge_pos():1806 [1] 586: 0.150 0.0003704 0.0006114 2525 8.41 6.540 13.466 2023-04-20T20:59:16.900184576 INFO 2025-10-21 18:04:39,717 calibrate.py _nudge_pos():1806 [1] 612: 0.190 0.0004374 0.0001391 2295 7.65 8.499 3.370 2023-04-20T21:07:20.897028352 INFO 2025-10-21 18:04:39,762 calibrate.py _nudge_pos():1806 [1] 616: 0.200 0.0000861 -0.0000038 65 0.21 59.947 -3.281 2023-04-20T21:07:36.895932416 INFO 2025-10-21 18:04:40,884 calibrate.py _nudge_pos():1806 [1] 716: 0.090 0.0020275 0.0072129 33668 112.22 2.684 11.910 2023-04-20T23:01:29.497867264 INFO 2025-10-21 18:04:41,764 calibrate.py _nudge_pos():1806 [1] 790: 0.160 0.0006090 0.0005507 4890 16.30 5.553 6.262 2023-04-20T23:19:00.495868928 INFO 2025-10-21 18:04:42,581 calibrate.py _nudge_pos():1806 [1] 854: 0.130 0.0020415 0.0040030 38647 128.82 2.354 5.758 2023-04-21T01:28:54.101970432 INFO 2025-10-21 18:04:45,625 calibrate.py _nudge_pos():1806 [1] 1107: 0.040 0.0035601 -0.0015547 5251 17.50 30.226 -16.463 2023-04-21T01:50:36.302763520 INFO 2025-10-21 18:04:46,830 calibrate.py _nudge_pos():1806 [1] 1189: 0.060 0.0004946 0.0010316 3235 10.78 6.816 17.732 2023-04-21T02:02:44.302892032 INFO 2025-10-21 18:04:46,898 calibrate.py _nudge_pos():1806 [1] 1192: 0.080 0.0000157 -0.0003119 30 0.10 24.153 -597.972 2023-04-21T02:02:52.302344192 INFO 2025-10-21 18:04:48,316 calibrate.py _nudge_pos():1806 [1] 1311: 0.120 0.0000440 0.0003479 2640 8.80 0.743 7.329 2023-04-21T02:13:38.298090240 INFO 2025-10-21 18:04:48,330 calibrate.py _nudge_pos():1806 [1] 1312: 0.140 0.0001436 -0.0001563 25 0.08 266.690 -362.115 2023-04-21T02:13:43.297747968 INFO 2025-10-21 18:04:48,743 calibrate.py _nudge_pos():1806 [1] 1346: 0.120 -0.0000035 -0.0000011 55 0.18 -2.894 -1.122 2023-04-21T02:14:27.304732928 INFO 2025-10-21 18:04:49,114 calibrate.py _nudge_pos():1806 [1] 1375: 0.050 0.0000474 0.0101567 19096 63.65 0.111 29.569 2023-04-21T03:18:34.701168640 INFO 2025-10-21 18:04:49,656 calibrate.py _nudge_pos():1806 [1] 1420: 0.020 0.0004182 0.0037857 14356 47.85 1.298 14.660 2023-04-21T04:07:09.901463552 INFO 2025-10-21 18:04:49,776 calibrate.py _nudge_pos():1806 [1] 1430: 0.030 -0.0000075 -0.0000063 15 0.05 -23.924 -25.014 2023-04-21T04:07:22.900572928 INFO 2025-10-21 18:04:49,922 calibrate.py _nudge_pos():1806 [1] 1442: 0.010 -0.0000160 -0.0000155 20 0.06 -37.617 -45.392 2023-04-21T04:07:37.899545344 INFO 2025-10-21 18:04:49,947 calibrate.py _nudge_pos():1806 [1] 1444: 0.200 -0.0000099 -0.0000126 19 0.06 -24.593 -39.057 2023-04-21T04:07:42.699216896 INFO 2025-10-21 18:04:49,960 calibrate.py _nudge_pos():1806 [1] 1445: 0.010 0.0000112 -0.0000258 35 0.11 14.644 -42.169 2023-04-21T04:07:49.898723584 INFO 2025-10-21 18:04:50,157 calibrate.py _nudge_pos():1806 [1] 1461: 0.050 0.0000020 -0.0001019 340 1.13 0.259 -16.704 2023-04-21T04:09:13.902968832 INFO 2025-10-21 18:04:50,266 calibrate.py _nudge_pos():1806 [1] 1470: 0.020 -0.0000169 -0.0000132 25 0.08 -31.450 -30.620 2023-04-21T04:09:26.902078464 INFO 2025-10-21 18:04:50,410 calibrate.py _nudge_pos():1806 [1] 1482: 0.140 0.0005503 0.0017256 6900 23.00 3.555 13.904 2023-04-21T04:32:39.896651776 INFO 2025-10-21 18:04:51,234 calibrate.py _nudge_pos():1806 [1] 1550: 0.150 -0.0000984 -0.0000460 345 1.15 -12.747 -7.429 2023-04-21T04:34:55.897335040 INFO 2025-10-21 18:04:51,448 calibrate.py _nudge_pos():1806 [1] 1568: 0.190 0.0000361 0.0002742 2240 7.46 0.718 6.809 2023-04-21T04:42:40.895480320 INFO 2025-10-21 18:04:51,568 calibrate.py _nudge_pos():1806 [1] 1578: 0.170 -0.0000127 0.0000081 20 0.06 -29.795 23.672 2023-04-21T04:42:54.904520704 INFO 2025-10-21 18:04:52,047 calibrate.py _nudge_pos():1806 [1] 1618: 0.170 0.0000034 0.0000093 15 0.05 10.717 36.860 2023-04-21T04:43:36.901643776 INFO 2025-10-21 18:04:53,498 calibrate.py _nudge_pos():1806 [1] 1734: 0.030 -0.0000330 0.0002643 1886 6.28 -0.779 7.793 2023-04-21T04:51:50.097857536 INFO 2025-10-21 18:04:54,366 calibrate.py _nudge_pos():1806 [1] 1807: 0.090 0.0000645 0.0003912 2015 6.71 1.428 10.798 2023-04-21T04:59:45.095317760 INFO 2025-10-21 18:04:54,962 calibrate.py _nudge_pos():1806 [1] 1857: 0.080 0.0000274 0.0003974 1900 6.33 0.644 11.634 2023-04-21T05:06:54.095929344 INFO 2025-10-21 18:05:09,361 calibrate.py _nudge_pos():1806 [1] 3005: 0.190 -0.0000584 0.0000165 40 0.13 -66.728 23.488 2023-04-21T05:26:10.096737792 INFO 2025-10-21 18:05:14,909 calibrate.py _nudge_pos():1806 [1] 3464: 0.010 0.0000516 0.0000325 45 0.15 52.187 40.956 2023-04-21T05:33:58.304663296 INFO 2025-10-21 18:05:15,031 calibrate.py _nudge_pos():1806 [1] 3474: 0.040 0.0001953 0.0004315 1471 4.90 5.923 16.319 2023-04-21T05:39:01.303906560 INFO 2025-10-21 18:05:16,994 calibrate.py _nudge_pos():1806 [1] 3638: 0.080 -0.0001240 0.0005213 2725 9.08 -2.029 10.639 2023-04-21T05:50:49.295405824 INFO 2025-10-21 18:05:17,199 calibrate.py _nudge_pos():1806 [1] 3655: 0.170 0.0016901 0.0088391 33107 110.35 2.275 14.842 2023-04-21T07:41:26.700712448 INFO 2025-10-21 18:05:18,321 calibrate.py _nudge_pos():1806 [1] 3747: 0.050 0.0013171 0.0015481 6051 20.17 9.703 14.225 2023-04-21T08:03:07.901574144 INFO 2025-10-21 18:05:18,992 calibrate.py _nudge_pos():1806 [1] 3802: 0.030 0.0029613 0.0040075 39278 130.92 3.360 5.672 2023-04-21T10:14:57.499729408 INFO 2025-10-21 18:05:20,271 calibrate.py _nudge_pos():1806 [1] 3900: 0.030 0.0013176 0.0003202 4036 13.45 14.554 4.411 2023-04-21T10:30:01.697787648 INFO 2025-10-21 18:05:20,619 calibrate.py _nudge_pos():1806 [1] 3927: 0.120 0.0006156 0.0003389 2640 8.80 10.398 7.139 2023-04-21T10:39:15.499849472 INFO 2025-10-21 18:05:21,613 calibrate.py _nudge_pos():1806 [1] 4008: 0.170 -0.0000890 0.0000246 2260 7.53 -1.756 0.606 2023-04-21T10:48:07.503404800 INFO 2025-10-21 18:05:21,912 calibrate.py _nudge_pos():1806 [1] 4032: 0.060 0.0066282 0.0065599 33378 111.26 8.851 10.926 2023-04-21T12:39:46.104519424 INFO 2025-10-21 18:05:26,413 calibrate.py _nudge_pos():1806 [1] 4392: 0.060 0.0018597 -0.0005878 9861 32.87 8.407 -3.314 2023-04-21T13:18:37.304820992 INFO 2025-10-21 18:05:27,190 calibrate.py _nudge_pos():1806 [1] 4454: 0.150 0.0013369 -0.0014316 7350 24.50 8.109 -10.829 2023-04-21T13:44:08.299940864 INFO 2025-10-21 18:05:32,013 calibrate.py _nudge_pos():1806 [1] 4835: 0.040 0.0006248 0.0001131 2681 8.93 10.392 2.347 2023-04-21T13:59:24.497176832 INFO 2025-10-21 18:05:32,534 calibrate.py _nudge_pos():1806 [1] 4876: 0.090 0.0004077 -0.0000072 2115 7.05 8.597 -0.188 2023-04-21T14:07:07.495459328 INFO 2025-10-21 18:05:32,890 calibrate.py _nudge_pos():1806 [1] 4904: 0.090 0.0006629 0.0000923 2145 7.15 13.781 2.392 2023-04-21T14:14:43.504220672 INFO 2025-10-21 18:06:37,339 calibrate.py _nudge_pos():1862 [1] 9886: - - - 1 0.00 - - INFO 2025-10-21 18:06:37,339 calibrate.py _nudge_pos():1868 [1] Points in final series = 419491 INFO 2025-10-21 18:07:29,311 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 2510 on port side INFO 2025-10-21 18:07:29,315 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "2510" INFO 2025-10-21 18:07:30,361 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2013_Jan 2014_sep 2016_Jan 2018_apr 2019_Jun 2022_Jun 2025_Jan WARNING 2025-10-21 18:07:30,366 calibrate.py _cal_date_xml_files():1081 [1] Found 8 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2013_Jan INFO 2025-10-21 18:07:30,366 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 18:07:30,373 calibrate.py _cal_date_xml_files():1081 [1] Found 8 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2014_sep INFO 2025-10-21 18:07:30,373 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 18:07:30,379 calibrate.py _cal_date_xml_files():1081 [1] Found 8 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2016_Jan INFO 2025-10-21 18:07:30,379 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 18:07:30,385 calibrate.py _cal_date_xml_files():1081 [1] Found 8 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2018_apr INFO 2025-10-21 18:07:30,386 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 18:07:30,392 calibrate.py _cal_date_xml_files():1081 [1] Found 8 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2019_Jun INFO 2025-10-21 18:07:30,392 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 18:07:30,398 calibrate.py _cal_date_xml_files():1081 [1] Found 8 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2022_Jun INFO 2025-10-21 18:07:30,398 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 18:07:30,403 calibrate.py _cal_date_xml_files():1081 [1] Found 8 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2025_Jan INFO 2025-10-21 18:07:30,403 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 18:07:30,410 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2025_Jan/Oxygen_SBE43_2510.xml has CalibrationDate 2024-12-24 00:00:00+00:00 INFO 2025-10-21 18:07:30,411 calibrate.py _read_oxy_coeffs():1253 [1] Breaking from loop as /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2025_Jan/Oxygen_SBE43_2510.xml is after 2023.110.00 with mission_start=2023-04-20T16:18:27.384455424 INFO 2025-10-21 18:07:30,411 calibrate.py _read_oxy_coeffs():1270 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2025_Jan/Oxygen_SBE43_2510.xml is the first calibration file, but is after 2023.110.00 with mission_start=2023-04-20T16:18:27.384455424 INFO 2025-10-21 18:07:42,513 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_port: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2025_Jan/Oxygen_SBE43_2510.xml file: {'Soc': 0.58626, 'offset': -0.517, 'A': -0.0038384, 'B': 0.00019113, 'C': -3.1968e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.65, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 18:07:42,521 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 3968 on stbd side INFO 2025-10-21 18:07:42,521 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "3968" INFO 2025-10-21 18:07:42,662 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2020_Jul 2025_Jan WARNING 2025-10-21 18:07:42,666 calibrate.py _cal_date_xml_files():1081 [1] Found 3 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul INFO 2025-10-21 18:07:42,666 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 18:07:42,671 calibrate.py _cal_date_xml_files():1081 [1] Found 3 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2025_Jan INFO 2025-10-21 18:07:42,671 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 18:07:42,678 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml has CalibrationDate 2020-06-16 00:00:00+00:00 INFO 2025-10-21 18:07:42,678 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml is just before 2023.110.00 with mission_start=2023-04-20T16:18:27.384455424 INFO 2025-10-21 18:07:54,733 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_stbd: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml file: {'Soc': 0.43332, 'offset': -0.5106, 'A': -0.0037655, 'B': 0.00018802, 'C': -3.038e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.54, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 18:08:11,307 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 31 seconds, d_end_time_diff: -1 seconds INFO 2025-10-21 18:08:16,024 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 31 seconds, d_end_time_diff: -1 seconds INFO 2025-10-21 18:08:16,034 calibrate.py _ctd_process():2919 [1] Performing range checking of ['seabird25p_salinity'] in 2023.110.00/seabird25p.nc WARNING 2025-10-21 18:08:16,037 calibrate.py _range_qc_combined_nc():890 [1] More than 500 (556) seabird25p_salinity values found outside of range. This may indicate a problem with the seabird25p data. INFO 2025-10-21 18:08:16,037 calibrate.py _range_qc_combined_nc():898 [1] Setting 556 seabird25p_salinity values to NaN INFO 2025-10-21 18:08:16,038 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('seabird25p_salinity', Range(min=30, max=40))] INFO 2025-10-21 18:08:16,038 calibrate.py _range_qc_combined_nc():936 [1] Done range checking seabird25p INFO 2025-10-21 18:08:16,356 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/i2map/missionnetcdfs/2023.110.00/i2map_2023.110.00_cal.nc INFO 2025-10-21 18:09:15,593 calibrate.py write_netcdf():3512 [1] Data variables written: depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_par, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_propRpm, tailcone_time, time INFO 2025-10-21 18:09:15,596 process.py align():251 [1] Alignment steps for 2023.110.00 INFO 2025-10-21 18:09:15,640 align.py process_cal():139 [1] Processing i2map_2023.110.00_cal.nc from /data/auv_data/i2map/missionnetcdfs/2023.110.00 INFO 2025-10-21 18:09:15,762 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 18:09:15,774 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 18:09:16,083 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 18:09:16,104 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 18:09:16,374 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 18:09:16,389 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 18:09:16,558 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-10-21 18:09:16,558 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-10-21 18:09:16,684 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 18:09:16,703 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 18:09:16,992 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.110.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:09:17,017 align.py process_cal():249 [1] seabird25p_temperature: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:09:17,432 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.110.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:09:17,463 align.py process_cal():249 [1] seabird25p_conductivity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:09:17,839 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.110.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:09:17,865 align.py process_cal():249 [1] seabird25p_salinity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:09:18,262 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.110.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:09:18,299 align.py process_cal():249 [1] seabird25p_temperature_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:09:18,670 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.110.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:09:18,695 align.py process_cal():249 [1] seabird25p_conductivity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:09:19,076 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.110.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:09:19,103 align.py process_cal():249 [1] seabird25p_salinity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:09:19,475 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.110.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:09:19,499 align.py process_cal():249 [1] seabird25p_dissolvedO2_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:09:19,872 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.110.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:09:19,897 align.py process_cal():249 [1] seabird25p_oxygen_mll_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:09:20,269 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.110.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:09:20,291 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:09:20,664 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.110.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:09:20,689 align.py process_cal():249 [1] seabird25p_dissolvedO2_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:09:21,071 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.110.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:09:21,094 align.py process_cal():249 [1] seabird25p_oxygen_mll_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:09:21,464 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.110.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:09:21,487 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:09:21,855 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.110.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:09:21,877 align.py process_cal():249 [1] seabird25p_beam_transmittance: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:09:22,285 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.110.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:09:22,314 align.py process_cal():249 [1] seabird25p_depth: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:09:22,684 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.110.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:09:22,705 align.py process_cal():249 [1] seabird25p_par: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:09:23,107 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 18:09:23,276 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/i2map/missionnetcdfs/2023.110.00/i2map_2023.110.00_align.nc INFO 2025-10-21 18:09:23,438 align.py write_netcdf():342 [1] Data variables written: navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_latitude, seabird25p_longitude, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_par, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-10-21 18:09:23,440 process.py resample():273 [1] Resampling steps for 2023.110.00 INFO 2025-10-21 18:09:23,440 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-10-21 18:09:23,468 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2023.110.00/i2map_2023.110.00_align.nc mission netCDF file INFO 2025-10-21 18:09:23,477 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2023.110.00/i2map_2023.110.00_align.nc mission netCDF file INFO 2025-10-21 18:09:23,481 resample.py get_mission_start_end():1145 [1] navigation: 2023-04-20T16:18:20.594920704 to 2023-04-21T15:38:23.100354560 (0 days 00:00:00 before mission_end) INFO 2025-10-21 18:09:23,487 resample.py get_mission_start_end():1145 [1] seabird25p: 2023-04-20T16:18:27.384455424 to 2023-04-21T15:38:23.030359552 (0 days 00:00:00.069995008 before mission_end) INFO 2025-10-21 18:09:23,491 resample.py get_mission_start_end():1145 [1] tailcone : 2023-04-20T16:17:51.156937216 to 2023-04-21T15:38:22.950365184 (0 days 00:00:00.149989376 before mission_end) INFO 2025-10-21 18:09:23,493 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2023.110.00/i2map_2023.110.00_align.nc mission netCDF file INFO 2025-10-21 18:09:23,493 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-10-21 18:09:24,681 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-10-21 18:09:24,816 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-10-21 18:09:24,946 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-10-21 18:09:25,073 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-10-21 18:09:25,265 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature with frequency 1S following 3 point median filter INFO 2025-10-21 18:09:25,461 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity with frequency 1S following 3 point median filter INFO 2025-10-21 18:09:25,672 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity with frequency 1S following 3 point median filter INFO 2025-10-21 18:09:25,866 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 18:09:26,059 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 18:09:26,254 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 18:09:26,446 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_port with frequency 1S following 3 point median filter INFO 2025-10-21 18:09:26,638 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_port with frequency 1S following 3 point median filter INFO 2025-10-21 18:09:26,830 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_port with frequency 1S following 3 point median filter INFO 2025-10-21 18:09:27,021 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 18:09:27,216 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 18:09:27,422 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 18:09:27,631 resample.py resample_variable():1031 [1] Resampling seabird25p_beam_transmittance with frequency 1S following 3 point median filter INFO 2025-10-21 18:09:27,833 resample.py resample_variable():1031 [1] Resampling seabird25p_par with frequency 1S following 3 point median filter INFO 2025-10-21 18:09:27,964 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-10-21 18:09:28,494 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/i2map/missionnetcdfs/2023.110.00/i2map_2023.110.00_1S.nc INFO 2025-10-21 18:09:28,496 process.py archive():337 [1] Archiving steps for 2023.110.00 INFO 2025-10-21 18:09:28,496 process.py archive():347 [1] nc_file_base = /data/auv_data/i2map/missionnetcdfs/2023.110.00/i2map_2023.110.00, BASE_PATH = /data/auv_data INFO 2025-10-21 18:09:28,498 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/i2map/missionnetcdfs/2023.110.00/i2map_2023.110.00 files to /Volumes/AUVCTD/surveys/2023/netcdf INFO 2025-10-21 18:09:28,502 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2023/netcdf/i2map_2023.110.00_1S.nc INFO 2025-10-21 18:09:28,553 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2023.110.00/i2map_2023.110.00_1S.nc /Volumes/AUVCTD/surveys/2023/netcdf done. INFO 2025-10-21 18:09:28,554 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2023/netcdf/i2map_2023.110.00_cal.nc INFO 2025-10-21 18:09:28,940 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2023.110.00/i2map_2023.110.00_cal.nc /Volumes/AUVCTD/surveys/2023/netcdf done. INFO 2025-10-21 18:09:28,941 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2023/netcdf/i2map_2023.110.00_align.nc INFO 2025-10-21 18:09:29,303 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2023.110.00/i2map_2023.110.00_align.nc /Volumes/AUVCTD/surveys/2023/netcdf done. INFO 2025-10-21 18:09:29,317 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2023.110.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2023/2023110/2023.110.00 done. INFO 2025-10-21 18:09:29,697 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2023.110.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2023/2023110/2023.110.00 done. INFO 2025-10-21 18:09:29,824 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2023.110.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2023/2023110/2023.110.00 done. INFO 2025-10-21 18:09:30,055 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2023.110.00/seabird25p.nc /Volumes/AUVCTD/missionnetcdfs/2023/2023110/2023.110.00 done. INFO 2025-10-21 18:09:30,132 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2023.110.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2023/2023110/2023.110.00 done. INFO 2025-10-21 18:09:30,132 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-10-21 18:09:30,132 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2023.110.00/i2map_2023.110.00_processing.log /Volumes/AUVCTD/surveys/2023/netcdf