INFO 2025-10-21 17:57:34,610 process.py process_mission():429 [1] commandline = /src/data/process_i2map.py -v --noinput --start_year 2022 --end_year 2022 --start_yd 1 --end_yd 365 --num_cores 1 --clobber INFO 2025-10-21 17:57:34,610 process.py process_mission():449 [1] Processing i2map mission 2022.333.00 by user docker_user on host cb88459c7ecc INFO 2025-10-21 17:57:34,610 process.py download_process():165 [1] Download and processing steps for 2022.333.00 INFO 2025-10-21 17:57:34,610 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/M3/master/i2MAP/2022/11/20221129/2022.333.00 INFO 2025-10-21 17:57:34,610 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/M3/master/i2MAP/2022/11/20221129/2022.333.00 to /data/auv_data/i2map/missionlogs/2022.333.00 INFO 2025-10-21 17:57:36,739 logs2netcdfs.py download_process_logs():779 [1] Processing mission: i2map 2022.333.00 INFO 2025-10-21 17:57:36,739 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2022.333.00/gps.log (931892 bytes) INFO 2025-10-21 17:57:36,844 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2022.333.00/navigation.log (138145564 bytes) INFO 2025-10-21 17:57:47,923 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2022.333.00/parosci.log (38830454 bytes) INFO 2025-10-21 17:57:51,081 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2022.333.00/parosci.log: [ 94210 254636 694615 694616 694617 738306 781996] INFO 2025-10-21 17:57:51,256 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2022.333.00/seabird25p.log (77973848 bytes) INFO 2025-10-21 17:57:56,766 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2022.333.00/seabird25p.log: [ 1 11743] INFO 2025-10-21 17:57:57,074 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2022.333.00/tailCone.log (19510075 bytes) INFO 2025-10-21 17:57:59,566 logs2netcdfs.py download_process_logs():807 [1] Time to process: 22.83 seconds INFO 2025-10-21 17:57:59,567 process.py calibrate():227 [1] Calibration steps for 2022.333.00 INFO 2025-10-21 17:58:00,109 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-10-21 17:58:00,111 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-10-21 17:58:01,053 calibrate.py _nudge_pos():1806 [1] 116: 0.080 0.0022810 -0.0026446 32603 108.67 3.119 -4.509 2022-11-29T19:37:08.163248896 INFO 2025-10-21 17:58:01,886 calibrate.py _nudge_pos():1806 [1] 194: 0.090 0.0008744 -0.0005066 1965 6.55 19.845 -14.340 2022-11-29T19:44:58.161051648 INFO 2025-10-21 17:58:02,960 calibrate.py _nudge_pos():1806 [1] 292: 0.060 0.0045989 0.0007916 37083 123.61 5.528 1.187 2022-11-29T21:50:11.756335360 INFO 2025-10-21 17:58:03,714 calibrate.py _nudge_pos():1806 [1] 360: 0.070 0.0001163 -0.0007416 2000 6.66 2.593 -20.622 2022-11-29T21:57:58.764343040 INFO 2025-10-21 17:58:04,524 calibrate.py _nudge_pos():1806 [1] 433: 0.110 0.0001656 -0.0006646 1870 6.23 3.950 -19.766 2022-11-29T22:05:24.763789824 INFO 2025-10-21 17:58:05,247 calibrate.py _nudge_pos():1806 [1] 498: 0.150 0.0002071 -0.0006785 1740 5.80 5.308 -21.690 2022-11-29T22:12:16.755566592 INFO 2025-10-21 17:58:05,860 calibrate.py _nudge_pos():1806 [1] 553: 0.010 0.0031332 -0.0023126 32448 108.16 4.304 -3.962 2022-11-30T00:01:20.357299200 INFO 2025-10-21 17:58:07,741 calibrate.py _nudge_pos():1806 [1] 722: 0.060 0.0019641 -0.0002560 2005 6.68 43.684 -7.102 2022-11-30T00:10:49.358319872 INFO 2025-10-21 17:58:07,954 calibrate.py _nudge_pos():1806 [1] 741: 0.100 0.0025031 0.0006621 38218 127.39 2.919 0.963 2022-11-30T02:18:30.963463936 INFO 2025-10-21 17:58:08,764 calibrate.py _nudge_pos():1806 [1] 811: 0.060 0.0000044 0.0000025 11 0.03 19.710 14.078 2022-11-30T02:19:42.158586624 INFO 2025-10-21 17:58:08,799 calibrate.py _nudge_pos():1806 [1] 814: 0.080 0.0005848 -0.0007387 2705 9.01 9.640 -15.186 2022-11-30T02:28:44.961402112 INFO 2025-10-21 17:58:09,181 calibrate.py _nudge_pos():1806 [1] 847: 0.110 0.0004476 -0.0004735 2030 6.76 9.832 -12.972 2022-11-30T02:36:02.961397248 INFO 2025-10-21 17:58:10,066 calibrate.py _nudge_pos():1806 [1] 924: 0.140 0.0003238 -0.0003846 1890 6.30 7.641 -11.319 2022-11-30T02:43:36.960296192 INFO 2025-10-21 17:58:10,829 calibrate.py _nudge_pos():1806 [1] 991: 0.200 0.0046684 0.0019082 17726 59.08 11.739 5.985 2022-11-30T03:43:48.162911744 INFO 2025-10-21 17:58:11,799 calibrate.py _nudge_pos():1806 [1] 1075: 0.180 0.0042688 -0.0020658 14335 47.78 13.274 -8.011 2022-11-30T04:32:58.360809216 INFO 2025-10-21 17:58:12,149 calibrate.py _nudge_pos():1806 [1] 1105: 0.010 -0.0001346 -0.0000584 406 1.35 -14.812 -8.018 2022-11-30T04:34:48.563260160 INFO 2025-10-21 17:58:12,197 calibrate.py _nudge_pos():1806 [1] 1109: 0.010 0.0000372 -0.0000204 86 0.28 19.533 -13.357 2022-11-30T04:35:08.561889792 INFO 2025-10-21 17:58:12,770 calibrate.py _nudge_pos():1806 [1] 1158: 0.080 0.0012594 -0.0002929 3570 11.90 15.728 -4.563 2022-11-30T04:47:50.559689472 INFO 2025-10-21 17:58:13,641 calibrate.py _nudge_pos():1806 [1] 1233: 0.090 -0.0000047 -0.0001211 315 1.05 -0.671 -21.444 2022-11-30T04:50:07.560304384 INFO 2025-10-21 17:58:14,279 calibrate.py _nudge_pos():1806 [1] 1288: 0.090 0.0002078 -0.0002427 1945 6.48 4.764 -6.941 2022-11-30T04:57:30.559956736 INFO 2025-10-21 17:58:15,056 calibrate.py _nudge_pos():1806 [1] 1355: 0.160 0.0002035 -0.0003397 1160 3.86 7.827 -16.292 2022-11-30T05:02:28.559542528 INFO 2025-10-21 17:58:15,321 calibrate.py _nudge_pos():1806 [1] 1378: 0.170 0.0003667 -0.0004779 1910 6.36 8.562 -13.916 2022-11-30T05:09:12.561866240 INFO 2025-10-21 17:58:16,215 calibrate.py _nudge_pos():1806 [1] 1454: 0.190 0.0002780 -0.0004400 1870 6.23 6.630 -13.087 2022-11-30T05:16:41.561107968 INFO 2025-10-21 17:58:42,006 calibrate.py _nudge_pos():1806 [1] 3643: 0.030 0.0024883 -0.0006441 3741 12.47 29.656 -9.573 2022-11-30T06:05:37.959950592 INFO 2025-10-21 17:58:42,582 calibrate.py _nudge_pos():1806 [1] 3692: 0.050 0.0004674 -0.0003651 2605 8.68 8.000 -7.794 2022-11-30T06:15:06.960971520 INFO 2025-10-21 17:58:42,759 calibrate.py _nudge_pos():1806 [1] 3707: 0.120 0.0021565 -0.0006204 32191 107.30 2.986 -1.071 2022-11-30T08:02:39.358951936 INFO 2025-10-21 17:58:42,785 calibrate.py _nudge_pos():1806 [1] 3709: 0.120 0.0021465 -0.0007067 30 0.10 3299.429 -1354.706 2022-11-30T08:02:46.358472448 INFO 2025-10-21 17:58:43,601 calibrate.py _nudge_pos():1806 [1] 3777: 0.120 0.0001716 -0.0004476 1470 4.90 5.207 -16.938 2022-11-30T08:08:47.363741952 INFO 2025-10-21 17:58:44,563 calibrate.py _nudge_pos():1806 [1] 3858: 0.130 0.0024757 0.0002420 36993 123.31 2.983 0.364 2022-11-30T10:13:25.961422848 INFO 2025-10-21 17:58:45,912 calibrate.py _nudge_pos():1806 [1] 3968: 0.150 0.0010990 -0.0008482 2755 9.18 17.787 -17.120 2022-11-30T10:24:25.956210176 INFO 2025-10-21 17:58:46,229 calibrate.py _nudge_pos():1806 [1] 3994: 0.200 0.0003506 -0.0004224 2235 7.45 6.995 -10.512 2022-11-30T10:32:17.963875328 INFO 2025-10-21 17:58:47,124 calibrate.py _nudge_pos():1806 [1] 4067: 0.040 0.0002531 -0.0004845 1866 6.22 6.049 -14.442 2022-11-30T10:39:43.163377152 INFO 2025-10-21 17:58:47,454 calibrate.py _nudge_pos():1806 [1] 4093: 0.070 0.0025239 -0.0008624 32883 109.61 3.421 -1.458 2022-11-30T12:29:44.561150208 INFO 2025-10-21 17:58:53,102 calibrate.py _nudge_pos():1806 [1] 4520: 0.080 0.0012141 -0.0016628 9711 32.37 5.574 -9.520 2022-11-30T13:09:12.758917888 INFO 2025-10-21 17:58:53,418 calibrate.py _nudge_pos():1806 [1] 4544: 0.100 0.0012574 0.0000955 8951 29.83 6.262 0.593 2022-11-30T13:39:25.964704768 INFO 2025-10-21 17:58:53,578 calibrate.py _nudge_pos():1806 [1] 4556: 0.170 -0.0000680 0.0000142 25 0.08 -126.314 32.839 2022-11-30T13:39:42.763553792 INFO 2025-10-21 17:58:58,556 calibrate.py _nudge_pos():1806 [1] 4952: 0.060 0.0002874 0.0010218 2655 8.85 4.827 21.403 2022-11-30T13:55:08.960104960 INFO 2025-10-21 17:58:59,040 calibrate.py _nudge_pos():1806 [1] 4991: 0.070 0.0002367 0.0005141 1976 6.58 5.341 14.470 2022-11-30T14:02:22.160428800 INFO 2025-10-21 17:59:00,201 calibrate.py _nudge_pos():1806 [1] 5084: 0.080 0.0003206 0.0008129 2041 6.80 7.006 22.152 2022-11-30T14:10:42.156176896 INFO 2025-10-21 17:59:07,199 calibrate.py _nudge_pos():1806 [1] 5640: 0.180 -0.0000230 0.0000183 15 0.05 -73.319 72.690 2022-11-30T14:19:59.957964544 INFO 2025-10-21 18:00:39,899 calibrate.py _nudge_pos():1862 [1] 12893: - - - 0 0.00 - - INFO 2025-10-21 18:00:39,899 calibrate.py _nudge_pos():1868 [1] Points in final series = 405689 INFO 2025-10-21 18:01:30,402 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 2510 on port side INFO 2025-10-21 18:01:30,404 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "2510" INFO 2025-10-21 18:01:30,705 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2013_Jan 2014_sep 2016_Jan 2018_apr 2019_Jun 2022_Jun 2025_Jan WARNING 2025-10-21 18:01:30,710 calibrate.py _cal_date_xml_files():1081 [1] Found 8 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2013_Jan INFO 2025-10-21 18:01:30,710 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 18:01:30,717 calibrate.py _cal_date_xml_files():1081 [1] Found 8 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2014_sep INFO 2025-10-21 18:01:30,717 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 18:01:30,723 calibrate.py _cal_date_xml_files():1081 [1] Found 8 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2016_Jan INFO 2025-10-21 18:01:30,724 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 18:01:30,729 calibrate.py _cal_date_xml_files():1081 [1] Found 8 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2018_apr INFO 2025-10-21 18:01:30,729 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 18:01:30,735 calibrate.py _cal_date_xml_files():1081 [1] Found 8 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2019_Jun INFO 2025-10-21 18:01:30,735 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 18:01:30,741 calibrate.py _cal_date_xml_files():1081 [1] Found 8 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2022_Jun INFO 2025-10-21 18:01:30,741 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 18:01:30,746 calibrate.py _cal_date_xml_files():1081 [1] Found 8 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2025_Jan INFO 2025-10-21 18:01:30,746 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 18:01:30,752 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2025_Jan/Oxygen_SBE43_2510.xml has CalibrationDate 2024-12-24 00:00:00+00:00 INFO 2025-10-21 18:01:30,753 calibrate.py _read_oxy_coeffs():1253 [1] Breaking from loop as /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2025_Jan/Oxygen_SBE43_2510.xml is after 2022.333.00 with mission_start=2022-11-29T17:46:53.346394880 INFO 2025-10-21 18:01:30,753 calibrate.py _read_oxy_coeffs():1270 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2025_Jan/Oxygen_SBE43_2510.xml is the first calibration file, but is after 2022.333.00 with mission_start=2022-11-29T17:46:53.346394880 INFO 2025-10-21 18:01:42,603 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_port: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2025_Jan/Oxygen_SBE43_2510.xml file: {'Soc': 0.58626, 'offset': -0.517, 'A': -0.0038384, 'B': 0.00019113, 'C': -3.1968e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.65, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 18:01:42,611 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 3968 on stbd side INFO 2025-10-21 18:01:42,611 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "3968" INFO 2025-10-21 18:01:42,855 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2020_Jul 2025_Jan WARNING 2025-10-21 18:01:42,859 calibrate.py _cal_date_xml_files():1081 [1] Found 3 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul INFO 2025-10-21 18:01:42,859 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 18:01:42,864 calibrate.py _cal_date_xml_files():1081 [1] Found 3 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2025_Jan INFO 2025-10-21 18:01:42,864 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 18:01:42,870 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml has CalibrationDate 2020-06-16 00:00:00+00:00 INFO 2025-10-21 18:01:42,870 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml is just before 2022.333.00 with mission_start=2022-11-29T17:46:53.346394880 INFO 2025-10-21 18:01:54,473 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_stbd: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml file: {'Soc': 0.43332, 'offset': -0.5106, 'A': -0.0037655, 'B': 0.00018802, 'C': -3.038e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.54, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 18:02:10,584 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 7 seconds, d_end_time_diff: 0 seconds INFO 2025-10-21 18:02:15,245 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 7 seconds, d_end_time_diff: 0 seconds INFO 2025-10-21 18:02:15,254 calibrate.py _ctd_process():2919 [1] Performing range checking of ['seabird25p_salinity'] in 2022.333.00/seabird25p.nc WARNING 2025-10-21 18:02:15,257 calibrate.py _range_qc_combined_nc():890 [1] More than 500 (751) seabird25p_salinity values found outside of range. This may indicate a problem with the seabird25p data. INFO 2025-10-21 18:02:15,258 calibrate.py _range_qc_combined_nc():898 [1] Setting 751 seabird25p_salinity values to NaN INFO 2025-10-21 18:02:15,258 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('seabird25p_salinity', Range(min=30, max=40))] INFO 2025-10-21 18:02:15,258 calibrate.py _range_qc_combined_nc():936 [1] Done range checking seabird25p INFO 2025-10-21 18:02:15,567 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/i2map/missionnetcdfs/2022.333.00/i2map_2022.333.00_cal.nc INFO 2025-10-21 18:03:13,773 calibrate.py write_netcdf():3512 [1] Data variables written: depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_par, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_propRpm, tailcone_time, time INFO 2025-10-21 18:03:13,778 process.py align():251 [1] Alignment steps for 2022.333.00 INFO 2025-10-21 18:03:13,825 align.py process_cal():139 [1] Processing i2map_2022.333.00_cal.nc from /data/auv_data/i2map/missionnetcdfs/2022.333.00 INFO 2025-10-21 18:03:13,935 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 18:03:13,946 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 18:03:14,212 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 18:03:14,227 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 18:03:14,490 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 18:03:14,510 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 18:03:14,666 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-10-21 18:03:14,666 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-10-21 18:03:14,771 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 18:03:14,785 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 18:03:15,068 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.333.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:03:15,089 align.py process_cal():249 [1] seabird25p_temperature: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:03:15,464 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.333.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:03:15,491 align.py process_cal():249 [1] seabird25p_conductivity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:03:15,861 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.333.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:03:15,884 align.py process_cal():249 [1] seabird25p_salinity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:03:16,254 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.333.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:03:16,279 align.py process_cal():249 [1] seabird25p_temperature_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:03:16,654 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.333.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:03:16,677 align.py process_cal():249 [1] seabird25p_conductivity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:03:17,054 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.333.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:03:17,078 align.py process_cal():249 [1] seabird25p_salinity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:03:17,469 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.333.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:03:17,492 align.py process_cal():249 [1] seabird25p_dissolvedO2_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:03:17,862 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.333.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:03:17,887 align.py process_cal():249 [1] seabird25p_oxygen_mll_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:03:18,256 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.333.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:03:18,278 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:03:18,648 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.333.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:03:18,677 align.py process_cal():249 [1] seabird25p_dissolvedO2_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:03:19,039 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.333.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:03:19,060 align.py process_cal():249 [1] seabird25p_oxygen_mll_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:03:19,423 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.333.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:03:19,444 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:03:19,806 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.333.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:03:19,828 align.py process_cal():249 [1] seabird25p_beam_transmittance: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:03:20,189 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.333.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:03:20,208 align.py process_cal():249 [1] seabird25p_depth: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:03:20,571 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.333.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:03:20,598 align.py process_cal():249 [1] seabird25p_par: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 18:03:20,998 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 18:03:21,164 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/i2map/missionnetcdfs/2022.333.00/i2map_2022.333.00_align.nc INFO 2025-10-21 18:03:21,321 align.py write_netcdf():342 [1] Data variables written: navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_latitude, seabird25p_longitude, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_par, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-10-21 18:03:21,322 process.py resample():273 [1] Resampling steps for 2022.333.00 INFO 2025-10-21 18:03:21,323 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-10-21 18:03:21,350 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2022.333.00/i2map_2022.333.00_align.nc mission netCDF file INFO 2025-10-21 18:03:21,359 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2022.333.00/i2map_2022.333.00_align.nc mission netCDF file INFO 2025-10-21 18:03:21,363 resample.py get_mission_start_end():1145 [1] navigation: 2022-11-29T17:47:11.075180288 to 2022-11-30T16:21:31.558456064 (0 days 00:00:00.159988736 before mission_end) INFO 2025-10-21 18:03:21,368 resample.py get_mission_start_end():1145 [1] seabird25p: 2022-11-29T17:46:53.346394880 to 2022-11-30T16:21:31.718444800 (0 days 00:00:00 before mission_end) INFO 2025-10-21 18:03:21,373 resample.py get_mission_start_end():1145 [1] tailcone : 2022-11-29T17:46:41.737189888 to 2022-11-30T16:21:31.698446336 (0 days 00:00:00.019998464 before mission_end) INFO 2025-10-21 18:03:21,374 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2022.333.00/i2map_2022.333.00_align.nc mission netCDF file INFO 2025-10-21 18:03:21,375 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-10-21 18:03:22,461 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-10-21 18:03:22,589 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-10-21 18:03:22,734 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-10-21 18:03:22,856 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-10-21 18:03:23,042 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature with frequency 1S following 3 point median filter INFO 2025-10-21 18:03:23,236 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity with frequency 1S following 3 point median filter INFO 2025-10-21 18:03:23,441 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity with frequency 1S following 3 point median filter INFO 2025-10-21 18:03:23,631 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 18:03:23,819 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 18:03:24,013 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 18:03:24,253 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_port with frequency 1S following 3 point median filter INFO 2025-10-21 18:03:24,455 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_port with frequency 1S following 3 point median filter INFO 2025-10-21 18:03:24,667 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_port with frequency 1S following 3 point median filter INFO 2025-10-21 18:03:24,954 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 18:03:25,195 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 18:03:25,420 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 18:03:25,705 resample.py resample_variable():1031 [1] Resampling seabird25p_beam_transmittance with frequency 1S following 3 point median filter INFO 2025-10-21 18:03:25,940 resample.py resample_variable():1031 [1] Resampling seabird25p_par with frequency 1S following 3 point median filter INFO 2025-10-21 18:03:26,071 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-10-21 18:03:26,595 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/i2map/missionnetcdfs/2022.333.00/i2map_2022.333.00_1S.nc INFO 2025-10-21 18:03:26,599 process.py archive():337 [1] Archiving steps for 2022.333.00 INFO 2025-10-21 18:03:26,599 process.py archive():347 [1] nc_file_base = /data/auv_data/i2map/missionnetcdfs/2022.333.00/i2map_2022.333.00, BASE_PATH = /data/auv_data INFO 2025-10-21 18:03:26,601 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/i2map/missionnetcdfs/2022.333.00/i2map_2022.333.00 files to /Volumes/AUVCTD/surveys/2022/netcdf INFO 2025-10-21 18:03:26,603 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2022/netcdf/i2map_2022.333.00_1S.nc INFO 2025-10-21 18:03:26,651 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2022.333.00/i2map_2022.333.00_1S.nc /Volumes/AUVCTD/surveys/2022/netcdf done. INFO 2025-10-21 18:03:26,653 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2022/netcdf/i2map_2022.333.00_cal.nc INFO 2025-10-21 18:03:27,072 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2022.333.00/i2map_2022.333.00_cal.nc /Volumes/AUVCTD/surveys/2022/netcdf done. INFO 2025-10-21 18:03:27,073 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2022/netcdf/i2map_2022.333.00_align.nc INFO 2025-10-21 18:03:27,399 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2022.333.00/i2map_2022.333.00_align.nc /Volumes/AUVCTD/surveys/2022/netcdf done. INFO 2025-10-21 18:03:27,414 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2022.333.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2022/2022333/2022.333.00 done. INFO 2025-10-21 18:03:27,779 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2022.333.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2022/2022333/2022.333.00 done. INFO 2025-10-21 18:03:27,901 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2022.333.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2022/2022333/2022.333.00 done. INFO 2025-10-21 18:03:28,122 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2022.333.00/seabird25p.nc /Volumes/AUVCTD/missionnetcdfs/2022/2022333/2022.333.00 done. INFO 2025-10-21 18:03:28,197 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2022.333.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2022/2022333/2022.333.00 done. INFO 2025-10-21 18:03:28,197 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-10-21 18:03:28,197 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2022.333.00/i2map_2022.333.00_processing.log /Volumes/AUVCTD/surveys/2022/netcdf