INFO 2025-10-21 17:31:28,982 process.py process_mission():429 [1] commandline = /src/data/process_i2map.py -v --noinput --start_year 2022 --end_year 2022 --start_yd 1 --end_yd 365 --num_cores 1 --clobber INFO 2025-10-21 17:31:28,982 process.py process_mission():449 [1] Processing i2map mission 2022.131.00 by user docker_user on host cb88459c7ecc INFO 2025-10-21 17:31:28,982 process.py download_process():165 [1] Download and processing steps for 2022.131.00 INFO 2025-10-21 17:31:28,982 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/M3/master/i2MAP/2022/05/20220511/2022.131.00 INFO 2025-10-21 17:31:28,982 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/M3/master/i2MAP/2022/05/20220511/2022.131.00 to /data/auv_data/i2map/missionlogs/2022.131.00 INFO 2025-10-21 17:31:31,351 logs2netcdfs.py download_process_logs():779 [1] Processing mission: i2map 2022.131.00 INFO 2025-10-21 17:31:31,351 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2022.131.00/gps.log (924692 bytes) INFO 2025-10-21 17:31:31,453 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2022.131.00/navigation.log (142702924 bytes) INFO 2025-10-21 17:31:42,556 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2022.131.00/parosci.log (40111046 bytes) INFO 2025-10-21 17:31:45,760 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2022.131.00/parosci.log: [541356 541357] INFO 2025-10-21 17:31:45,894 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2022.131.00/seabird25p.log (80545688 bytes) INFO 2025-10-21 17:31:51,382 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2022.131.00/seabird25p.log: [ 1 554327] INFO 2025-10-21 17:31:51,685 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2022.131.00/tailCone.log (20153371 bytes) INFO 2025-10-21 17:31:54,244 logs2netcdfs.py download_process_logs():807 [1] Time to process: 22.89 seconds INFO 2025-10-21 17:31:54,245 process.py calibrate():227 [1] Calibration steps for 2022.131.00 INFO 2025-10-21 17:31:54,804 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-10-21 17:31:54,807 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-10-21 17:31:56,170 calibrate.py _nudge_pos():1806 [1] 155: 0.190 -0.0001654 0.0065311 31867 106.22 -0.231 11.393 2022-05-11T17:52:30.981147648 INFO 2025-10-21 17:31:58,968 calibrate.py _nudge_pos():1806 [1] 416: 0.090 -0.0008055 -0.0001921 4705 15.68 -7.633 -2.270 2022-05-11T18:12:32.178860032 INFO 2025-10-21 17:31:59,830 calibrate.py _nudge_pos():1806 [1] 495: 0.200 0.0043151 0.0060308 35607 118.69 5.401 9.416 2022-05-11T20:12:31.585666816 INFO 2025-10-21 17:32:00,587 calibrate.py _nudge_pos():1806 [1] 563: 0.050 -0.0002460 -0.0006517 4076 13.58 -2.691 -8.890 2022-05-11T20:27:13.785232128 INFO 2025-10-21 17:32:01,887 calibrate.py _nudge_pos():1806 [1] 680: 0.110 0.0001529 -0.0002125 1945 6.48 3.506 -6.078 2022-05-11T20:35:38.780637440 INFO 2025-10-21 17:32:02,518 calibrate.py _nudge_pos():1806 [1] 737: 0.140 0.0000994 -0.0003938 1800 6.00 2.463 -12.169 2022-05-11T20:42:34.782139648 INFO 2025-10-21 17:32:03,486 calibrate.py _nudge_pos():1806 [1] 824: 0.190 -0.0005169 0.0018770 32181 107.27 -0.716 3.242 2022-05-11T22:31:17.185324288 INFO 2025-10-21 17:32:04,064 calibrate.py _nudge_pos():1806 [1] 875: 0.030 -0.0004543 -0.0003142 2355 7.85 -8.602 -7.420 2022-05-11T22:39:58.379620096 INFO 2025-10-21 17:32:04,605 calibrate.py _nudge_pos():1806 [1] 923: 0.030 0.0030033 0.0036258 36093 120.31 3.709 5.585 2022-05-12T00:41:03.981892096 INFO 2025-10-21 17:32:05,735 calibrate.py _nudge_pos():1806 [1] 1017: 0.070 -0.0001989 -0.0002759 3381 11.27 -2.623 -4.537 2022-05-12T00:53:53.179198464 INFO 2025-10-21 17:32:06,572 calibrate.py _nudge_pos():1806 [1] 1089: 0.080 -0.0000396 -0.0001741 1760 5.86 -1.003 -5.502 2022-05-12T01:00:55.980234496 INFO 2025-10-21 17:32:07,301 calibrate.py _nudge_pos():1806 [1] 1150: 0.090 -0.0002887 -0.0002444 1630 5.43 -7.899 -8.341 2022-05-12T01:07:21.983791616 INFO 2025-10-21 17:32:07,716 calibrate.py _nudge_pos():1806 [1] 1186: 0.100 -0.0001000 -0.0000846 40 0.13 -114.258 -120.582 2022-05-12T01:08:04.980846080 INFO 2025-10-21 17:32:08,656 calibrate.py _nudge_pos():1806 [1] 1267: 0.160 -0.0006388 0.0053574 16971 56.57 -1.678 17.550 2022-05-12T02:05:59.182846976 INFO 2025-10-21 17:32:09,373 calibrate.py _nudge_pos():1806 [1] 1327: 0.160 -0.0016207 0.0006089 14276 47.58 -5.060 2.371 2022-05-12T02:54:33.383210752 INFO 2025-10-21 17:32:10,769 calibrate.py _nudge_pos():1806 [1] 1446: 0.080 -0.0008583 0.0017172 6641 22.13 -5.761 14.376 2022-05-12T03:18:39.584139008 INFO 2025-10-21 17:32:11,192 calibrate.py _nudge_pos():1806 [1] 1481: 0.050 -0.0000469 -0.0000731 45 0.15 -47.467 -92.405 2022-05-12T03:19:22.581193472 INFO 2025-10-21 17:32:11,216 calibrate.py _nudge_pos():1806 [1] 1483: 0.050 -0.0002601 0.0003643 12366 41.22 -0.937 1.638 2022-05-12T04:00:36.781699072 INFO 2025-10-21 17:32:12,180 calibrate.py _nudge_pos():1806 [1] 1563: 0.060 -0.0003246 0.0002308 290 0.96 -50.055 44.392 2022-05-12T04:02:53.782313984 INFO 2025-10-21 17:32:12,900 calibrate.py _nudge_pos():1806 [1] 1623: 0.080 0.0000095 -0.0001606 600 2.00 0.706 -14.908 2022-05-12T04:05:52.780051712 INFO 2025-10-21 17:32:13,359 calibrate.py _nudge_pos():1806 [1] 1660: 0.090 -0.0000292 0.0000195 65 0.21 -20.331 16.926 2022-05-12T04:06:41.776695296 INFO 2025-10-21 17:32:13,372 calibrate.py _nudge_pos():1806 [1] 1661: 0.090 0.0000297 -0.0000087 15 0.05 94.489 -34.642 2022-05-12T04:06:44.776489728 INFO 2025-10-21 17:32:14,014 calibrate.py _nudge_pos():1806 [1] 1714: 0.110 -0.0001263 -0.0004152 1410 4.70 -3.996 -16.381 2022-05-12T04:12:18.783608576 INFO 2025-10-21 17:32:14,815 calibrate.py _nudge_pos():1806 [1] 1781: 0.150 0.0001584 -0.0001120 1655 5.51 4.269 -3.763 2022-05-12T04:18:55.776412928 INFO 2025-10-21 17:32:15,690 calibrate.py _nudge_pos():1806 [1] 1853: 0.070 0.0001369 -0.0000511 1801 6.00 3.389 -1.578 2022-05-12T04:26:06.976873728 INFO 2025-10-21 17:32:15,739 calibrate.py _nudge_pos():1806 [1] 1857: 0.170 -0.0000032 -0.0000020 150 0.50 -0.948 -0.729 2022-05-12T04:26:39.784626176 INFO 2025-10-21 17:32:30,360 calibrate.py _nudge_pos():1806 [1] 3052: 0.070 0.0000090 0.0000269 15 0.05 28.668 106.979 2022-05-12T04:46:36.982612480 INFO 2025-10-21 17:32:53,346 calibrate.py _nudge_pos():1806 [1] 4974: 0.070 0.0011447 0.0001521 2646 8.82 19.289 3.197 2022-05-12T05:27:27.184762112 INFO 2025-10-21 17:32:54,438 calibrate.py _nudge_pos():1806 [1] 5066: 0.080 0.0002598 0.0001578 2485 8.28 4.661 3.532 2022-05-12T05:37:15.184481280 INFO 2025-10-21 17:32:55,072 calibrate.py _nudge_pos():1806 [1] 5120: 0.160 0.0004197 0.0048989 32177 107.25 0.581 8.464 2022-05-12T07:25:23.579995904 INFO 2025-10-21 17:32:55,309 calibrate.py _nudge_pos():1806 [1] 5140: 0.130 0.0000444 0.0000341 30 0.10 68.200 65.321 2022-05-12T07:25:48.578283264 INFO 2025-10-21 17:32:56,403 calibrate.py _nudge_pos():1806 [1] 5232: 0.190 -0.0001099 -0.0009030 3865 12.88 -1.268 -12.992 2022-05-12T07:40:13.579026688 INFO 2025-10-21 17:32:57,022 calibrate.py _nudge_pos():1806 [1] 5281: 0.120 0.0012457 0.0038318 35742 119.14 1.553 5.960 2022-05-12T09:40:10.176026112 INFO 2025-10-21 17:32:57,896 calibrate.py _nudge_pos():1806 [1] 5352: 0.200 -0.0002470 -0.0000456 3510 11.70 -3.138 -0.722 2022-05-12T09:53:03.183071488 INFO 2025-10-21 17:32:59,408 calibrate.py _nudge_pos():1806 [1] 5476: 0.040 -0.0004841 0.0001442 2160 7.20 -9.993 3.713 2022-05-12T10:02:18.385037312 INFO 2025-10-21 17:33:02,172 calibrate.py _nudge_pos():1806 [1] 5701: 0.110 -0.0003171 0.0000879 2290 7.63 -6.175 2.134 2022-05-12T10:13:41.378249216 INFO 2025-10-21 17:33:03,293 calibrate.py _nudge_pos():1806 [1] 5794: 0.190 0.0006814 0.0050712 32307 107.69 0.940 8.726 2022-05-12T12:02:54.779310592 INFO 2025-10-21 17:33:07,675 calibrate.py _nudge_pos():1806 [1] 6144: 0.150 -0.0005000 -0.0005012 9716 32.38 -2.294 -2.868 2022-05-12T12:41:06.982283776 INFO 2025-10-21 17:33:08,488 calibrate.py _nudge_pos():1806 [1] 6208: 0.060 -0.0002799 -0.0001324 9696 32.32 -1.287 -0.759 2022-05-12T13:14:29.185123584 INFO 2025-10-21 17:33:13,129 calibrate.py _nudge_pos():1806 [1] 6579: 0.130 -0.0000478 0.0000989 1420 4.73 -1.501 3.875 2022-05-12T13:25:23.180322048 INFO 2025-10-21 17:33:15,013 calibrate.py _nudge_pos():1806 [1] 6727: 0.200 -0.0000847 0.0004572 2410 8.03 -1.567 10.551 2022-05-12T13:35:52.177232640 INFO 2025-10-21 17:33:15,725 calibrate.py _nudge_pos():1806 [1] 6785: 0.010 -0.0001478 0.0000831 1736 5.78 -3.796 2.662 2022-05-12T13:42:37.379474432 INFO 2025-10-21 17:34:30,953 calibrate.py _nudge_pos():1862 [1] 12793: - - - 2 0.00 - - INFO 2025-10-21 17:34:30,953 calibrate.py _nudge_pos():1868 [1] Points in final series = 418961 INFO 2025-10-21 17:35:22,561 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 143 on port side INFO 2025-10-21 17:35:22,565 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "143" INFO 2025-10-21 17:35:22,824 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2011_June 2012_Oct 2013-Dec 2013_July 2015-Oct 2017_Mar 2020_Feb 2023_Jan 2024_Jan WARNING 2025-10-21 17:35:22,829 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2011_June INFO 2025-10-21 17:35:22,829 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 17:35:22,835 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2012_Oct INFO 2025-10-21 17:35:22,835 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 17:35:22,842 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013-Dec INFO 2025-10-21 17:35:22,842 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 17:35:22,848 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July INFO 2025-10-21 17:35:22,848 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 17:35:22,854 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2015-Oct INFO 2025-10-21 17:35:22,854 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 17:35:22,861 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2017_Mar INFO 2025-10-21 17:35:22,861 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 17:35:22,867 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2020_Feb INFO 2025-10-21 17:35:22,867 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 17:35:22,874 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2023_Jan INFO 2025-10-21 17:35:22,874 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 17:35:22,881 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2024_Jan INFO 2025-10-21 17:35:22,881 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 17:35:22,889 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July/Oxygen_SBE43_0143.XML has CalibrationDate 2013-07-17 00:00:00+00:00 INFO 2025-10-21 17:35:22,889 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July/Oxygen_SBE43_0143.XML is just before 2022.131.00 with mission_start=2022-05-11T16:04:04.006906112 INFO 2025-10-21 17:35:35,025 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_port: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July/Oxygen_SBE43_0143.XML file: {'Soc': 0.42815, 'offset': -0.4829, 'A': -0.0031081, 'B': 0.0001985, 'C': -3.3814e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.28, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 17:35:35,034 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 3968 on stbd side INFO 2025-10-21 17:35:35,034 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "3968" INFO 2025-10-21 17:35:35,229 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2020_Jul 2025_Jan WARNING 2025-10-21 17:35:35,232 calibrate.py _cal_date_xml_files():1081 [1] Found 3 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul INFO 2025-10-21 17:35:35,233 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 17:35:35,238 calibrate.py _cal_date_xml_files():1081 [1] Found 3 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2025_Jan INFO 2025-10-21 17:35:35,238 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 17:35:35,247 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml has CalibrationDate 2020-06-16 00:00:00+00:00 INFO 2025-10-21 17:35:35,248 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml is just before 2022.131.00 with mission_start=2022-05-11T16:04:04.006906112 INFO 2025-10-21 17:35:47,530 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_stbd: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml file: {'Soc': 0.43332, 'offset': -0.5106, 'A': -0.0037655, 'B': 0.00018802, 'C': -3.038e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.54, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 17:36:04,162 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 7 seconds, d_end_time_diff: 0 seconds INFO 2025-10-21 17:36:08,884 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 7 seconds, d_end_time_diff: 0 seconds INFO 2025-10-21 17:36:08,892 calibrate.py _ctd_process():2919 [1] Performing range checking of ['seabird25p_salinity'] in 2022.131.00/seabird25p.nc WARNING 2025-10-21 17:36:08,896 calibrate.py _range_qc_combined_nc():890 [1] More than 500 (10979) seabird25p_salinity values found outside of range. This may indicate a problem with the seabird25p data. INFO 2025-10-21 17:36:08,896 calibrate.py _range_qc_combined_nc():898 [1] Setting 10979 seabird25p_salinity values to NaN INFO 2025-10-21 17:36:08,897 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('seabird25p_salinity', Range(min=30, max=40))] INFO 2025-10-21 17:36:08,897 calibrate.py _range_qc_combined_nc():936 [1] Done range checking seabird25p INFO 2025-10-21 17:36:09,220 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/i2map/missionnetcdfs/2022.131.00/i2map_2022.131.00_cal.nc INFO 2025-10-21 17:37:10,230 calibrate.py write_netcdf():3512 [1] Data variables written: depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_par, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_propRpm, tailcone_time, time INFO 2025-10-21 17:37:10,235 process.py align():251 [1] Alignment steps for 2022.131.00 INFO 2025-10-21 17:37:10,288 align.py process_cal():139 [1] Processing i2map_2022.131.00_cal.nc from /data/auv_data/i2map/missionnetcdfs/2022.131.00 INFO 2025-10-21 17:37:10,454 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 17:37:10,467 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 17:37:10,752 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 17:37:10,770 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 17:37:11,053 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 17:37:11,074 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 17:37:11,250 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-10-21 17:37:11,251 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-10-21 17:37:11,362 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 17:37:11,377 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 17:37:11,680 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.131.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:37:11,706 align.py process_cal():249 [1] seabird25p_temperature: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:37:12,103 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.131.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:37:12,130 align.py process_cal():249 [1] seabird25p_conductivity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:37:12,529 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.131.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:37:12,556 align.py process_cal():249 [1] seabird25p_salinity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:37:12,955 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.131.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:37:12,984 align.py process_cal():249 [1] seabird25p_temperature_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:37:13,389 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.131.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:37:13,416 align.py process_cal():249 [1] seabird25p_conductivity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:37:13,855 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.131.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:37:13,879 align.py process_cal():249 [1] seabird25p_salinity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:37:14,322 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.131.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:37:14,345 align.py process_cal():249 [1] seabird25p_dissolvedO2_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:37:14,724 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.131.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:37:14,749 align.py process_cal():249 [1] seabird25p_oxygen_mll_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:37:15,131 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.131.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:37:15,153 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:37:15,528 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.131.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:37:15,561 align.py process_cal():249 [1] seabird25p_dissolvedO2_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:37:16,111 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.131.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:37:16,146 align.py process_cal():249 [1] seabird25p_oxygen_mll_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:37:16,610 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.131.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:37:16,632 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:37:17,045 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.131.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:37:17,067 align.py process_cal():249 [1] seabird25p_beam_transmittance: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:37:17,447 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.131.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:37:17,467 align.py process_cal():249 [1] seabird25p_depth: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:37:17,850 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.131.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:37:17,879 align.py process_cal():249 [1] seabird25p_par: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:37:18,298 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 17:37:18,479 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/i2map/missionnetcdfs/2022.131.00/i2map_2022.131.00_align.nc INFO 2025-10-21 17:37:18,646 align.py write_netcdf():342 [1] Data variables written: navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_latitude, seabird25p_longitude, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_par, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-10-21 17:37:18,648 process.py resample():273 [1] Resampling steps for 2022.131.00 INFO 2025-10-21 17:37:18,649 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-10-21 17:37:18,677 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2022.131.00/i2map_2022.131.00_align.nc mission netCDF file INFO 2025-10-21 17:37:18,688 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2022.131.00/i2map_2022.131.00_align.nc mission netCDF file INFO 2025-10-21 17:37:18,691 resample.py get_mission_start_end():1145 [1] navigation: 2022-05-11T16:04:22.065668864 to 2022-05-12T15:23:23.185308160 (0 days 00:00:00.049996800 before mission_end) INFO 2025-10-21 17:37:18,697 resample.py get_mission_start_end():1145 [1] seabird25p: 2022-05-11T16:04:04.006906112 to 2022-05-12T15:23:23.235304960 (0 days 00:00:00 before mission_end) INFO 2025-10-21 17:37:18,702 resample.py get_mission_start_end():1145 [1] tailcone : 2022-05-11T16:03:52.517692928 to 2022-05-12T15:23:23.115313152 (0 days 00:00:00.119991808 before mission_end) INFO 2025-10-21 17:37:18,703 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2022.131.00/i2map_2022.131.00_align.nc mission netCDF file INFO 2025-10-21 17:37:18,704 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-10-21 17:37:19,833 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-10-21 17:37:19,971 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-10-21 17:37:20,126 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-10-21 17:37:20,281 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-10-21 17:37:20,482 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature with frequency 1S following 3 point median filter INFO 2025-10-21 17:37:20,677 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity with frequency 1S following 3 point median filter INFO 2025-10-21 17:37:20,951 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity with frequency 1S following 3 point median filter INFO 2025-10-21 17:37:21,153 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 17:37:21,354 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 17:37:21,557 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 17:37:21,767 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_port with frequency 1S following 3 point median filter INFO 2025-10-21 17:37:21,982 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_port with frequency 1S following 3 point median filter INFO 2025-10-21 17:37:22,201 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_port with frequency 1S following 3 point median filter INFO 2025-10-21 17:37:22,418 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 17:37:22,639 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 17:37:22,868 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 17:37:23,091 resample.py resample_variable():1031 [1] Resampling seabird25p_beam_transmittance with frequency 1S following 3 point median filter INFO 2025-10-21 17:37:23,321 resample.py resample_variable():1031 [1] Resampling seabird25p_par with frequency 1S following 3 point median filter INFO 2025-10-21 17:37:23,488 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-10-21 17:37:24,016 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/i2map/missionnetcdfs/2022.131.00/i2map_2022.131.00_1S.nc INFO 2025-10-21 17:37:24,019 process.py archive():337 [1] Archiving steps for 2022.131.00 INFO 2025-10-21 17:37:24,020 process.py archive():347 [1] nc_file_base = /data/auv_data/i2map/missionnetcdfs/2022.131.00/i2map_2022.131.00, BASE_PATH = /data/auv_data INFO 2025-10-21 17:37:24,021 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/i2map/missionnetcdfs/2022.131.00/i2map_2022.131.00 files to /Volumes/AUVCTD/surveys/2022/netcdf INFO 2025-10-21 17:37:24,022 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2022/netcdf/i2map_2022.131.00_1S.nc INFO 2025-10-21 17:37:24,075 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2022.131.00/i2map_2022.131.00_1S.nc /Volumes/AUVCTD/surveys/2022/netcdf done. INFO 2025-10-21 17:37:24,076 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2022/netcdf/i2map_2022.131.00_cal.nc INFO 2025-10-21 17:37:24,472 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2022.131.00/i2map_2022.131.00_cal.nc /Volumes/AUVCTD/surveys/2022/netcdf done. INFO 2025-10-21 17:37:24,473 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2022/netcdf/i2map_2022.131.00_align.nc INFO 2025-10-21 17:37:24,829 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2022.131.00/i2map_2022.131.00_align.nc /Volumes/AUVCTD/surveys/2022/netcdf done. INFO 2025-10-21 17:37:24,842 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2022.131.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2022/2022131/2022.131.00 done. INFO 2025-10-21 17:37:25,241 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2022.131.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2022/2022131/2022.131.00 done. INFO 2025-10-21 17:37:25,353 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2022.131.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2022/2022131/2022.131.00 done. INFO 2025-10-21 17:37:25,600 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2022.131.00/seabird25p.nc /Volumes/AUVCTD/missionnetcdfs/2022/2022131/2022.131.00 done. INFO 2025-10-21 17:37:25,672 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2022.131.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2022/2022131/2022.131.00 done. INFO 2025-10-21 17:37:25,673 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-10-21 17:37:25,673 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2022.131.00/i2map_2022.131.00_processing.log /Volumes/AUVCTD/surveys/2022/netcdf