INFO 2025-06-27 07:18:35,146 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2015 --end_year 2025 --num_cores 1 -v --noinput --clobber INFO 2025-06-27 07:18:35,146 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Trip out to MARS location near where makai_ESPmv1 sampled - 28622G - During CANON October 2022 campaign - ctdToUse = ctd1 INFO 2025-06-27 07:18:35,147 process.py process_mission():449 [1] Processing CANON October 2022 mission 2022.286.01 by user docker_user on host 355841a7028c INFO 2025-06-27 07:18:35,147 process.py download_process():165 [1] Download and processing steps for 2022.286.01 INFO 2025-06-27 07:18:35,147 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2022/2022286/2022.286.01 INFO 2025-06-27 07:18:35,147 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2022/2022286/2022.286.01 to /data/auv_data/dorado/missionlogs/2022.286.01 INFO 2025-06-27 07:18:47,804 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2022.286.01 INFO 2025-06-27 07:18:47,804 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2022.286.01/ctdDriver.log (33635526 bytes) INFO 2025-06-27 07:18:50,270 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2022.286.01/ctdDriver2.log (33635517 bytes) INFO 2025-06-27 07:18:52,725 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2022.286.01/gps.log (1498676 bytes) INFO 2025-06-27 07:18:52,888 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2022.286.01/hydroscatlog.log (29421862 bytes) INFO 2025-06-27 07:18:56,008 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2022.286.01/navigation.log (169885588 bytes) INFO 2025-06-27 07:19:09,283 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2022.286.01/parosci.log (41849078 bytes) INFO 2025-06-27 07:19:12,707 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2022.286.01/parosci.log: [ 21164 509612 509613 553303 640684 684375 728066 728067 771756] INFO 2025-06-27 07:19:12,818 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2022.286.01/FLBBCD2K.log (32714847 bytes) INFO 2025-06-27 07:19:17,041 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2022.286.01/FLBBCD2K.log: [ 2 12 1966 1969 1971 1973 1976 1984 1988 1989 1995 1997 2000 2004 49597 81761 165908 165911 165912 165915 165917 165931 165934 165950 496181 677970 677972 836564 836566 836568 836570] INFO 2025-06-27 07:19:17,176 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2022.286.01/tailCone.log (21026539 bytes) INFO 2025-06-27 07:19:19,716 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2022.286.01/biolume.log (24467590 bytes) INFO 2025-06-27 07:19:22,120 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-27 07:19:23,294 logs2netcdfs.py download_process_logs():807 [1] Time to process: 35.49 seconds INFO 2025-06-27 07:19:23,295 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2022.286.01/lopc.bin (166648333 bytes) INFO 2025-06-27 07:19:23,295 lopcToNetCDF.py main():2297 [1] Processing begun: Fri Jun 27 07:19:23 2025 INFO 2025-06-27 07:19:23,295 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2022.286.01/parosci.nc INFO 2025-06-27 07:19:23,295 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-27 07:19:23,295 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2022.286.01/parosci.nc INFO 2025-06-27 07:19:23,299 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1665674920.0, sensor_off_time = 1665762524.0 INFO 2025-06-27 07:19:23,299 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 87603 seconds. Expecting to read 175206 L frames from the lopc.bin file. INFO 2025-06-27 07:19:23,299 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 175206 records from the lopc.bin file. INFO 2025-06-27 07:19:24,313 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2022-10-13 15:28:40 Z and endTime = 2022-10-14 15:48:43 Z with 175206 records expected to be read from lopc.bin INFO 2025-06-27 07:19:24,313 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2022.286.01/lopc.bin INFO 2025-06-27 07:19:24,313 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2022.286.01/lopc.nc WARNING 2025-06-27 07:19:24,313 lopcToNetCDF.py readCframeData():665 [1] Unable to parse a float from the string cstr[:70] = INFO 2025-06-27 07:19:24,313 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2022.286.01/lopc.nc INFO 2025-06-27 07:19:24,314 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2022.286.01 INFO 2025-06-27 07:19:24,314 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 INFO 2025-06-27 07:19:24,348 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-27 07:19:24,348 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-27 07:19:24,348 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ INFO 2025-06-27 07:19:27,940 lopcToNetCDF.py unpackLOPCbin():1013 [1] 10000 19230 7689 0 0 0 0 0 3.6 seconds, last L Frame: 175206 INFO 2025-06-27 07:19:34,195 lopcToNetCDF.py unpackLOPCbin():1013 [1] 20000 29230 22625 0 0 0 0 0 6.3 seconds, last L Frame: 175206 INFO 2025-06-27 07:19:43,544 lopcToNetCDF.py unpackLOPCbin():1013 [1] 30000 39230 45669 0 0 0 0 0 9.3 seconds, last L Frame: 175206 INFO 2025-06-27 07:20:11,748 lopcToNetCDF.py unpackLOPCbin():1013 [1] 40000 49230 122300 0 0 0 0 0 28.2 seconds, last L Frame: 175206 INFO 2025-06-27 07:20:44,938 lopcToNetCDF.py unpackLOPCbin():1013 [1] 50000 59230 217811 0 0 0 0 0 33.2 seconds, last L Frame: 175206 INFO 2025-06-27 07:21:08,672 lopcToNetCDF.py unpackLOPCbin():1013 [1] 60000 3694 282641 0 0 0 0 0 23.7 seconds, last L Frame: 175206 INFO 2025-06-27 07:21:54,970 lopcToNetCDF.py unpackLOPCbin():1013 [1] 70000 13694 415124 0 0 0 0 0 46.3 seconds, last L Frame: 175206 INFO 2025-06-27 07:22:16,761 lopcToNetCDF.py unpackLOPCbin():1013 [1] 80000 23694 470685 0 0 0 0 0 21.8 seconds, last L Frame: 175206 INFO 2025-06-27 07:22:32,441 lopcToNetCDF.py unpackLOPCbin():1013 [1] 90000 33694 510233 0 0 0 0 0 15.7 seconds, last L Frame: 175206 INFO 2025-06-27 07:22:52,215 lopcToNetCDF.py unpackLOPCbin():1013 [1] 100000 43694 561899 0 0 0 0 0 19.8 seconds, last L Frame: 175206 INFO 2025-06-27 07:23:02,691 lopcToNetCDF.py unpackLOPCbin():1013 [1] 110000 53694 587155 0 0 0 0 0 10.5 seconds, last L Frame: 175206 INFO 2025-06-27 07:23:16,705 lopcToNetCDF.py unpackLOPCbin():1013 [1] 120000 63694 622923 0 0 0 0 0 14.0 seconds, last L Frame: 175206 INFO 2025-06-27 07:23:25,805 lopcToNetCDF.py unpackLOPCbin():1013 [1] 130000 8158 645252 0 0 0 0 0 9.1 seconds, last L Frame: 175206 INFO 2025-06-27 07:23:31,182 lopcToNetCDF.py unpackLOPCbin():1013 [1] 140000 18158 657633 0 0 0 0 0 5.4 seconds, last L Frame: 175206 INFO 2025-06-27 07:23:36,882 lopcToNetCDF.py unpackLOPCbin():1013 [1] 150000 28158 670538 0 0 0 0 0 5.7 seconds, last L Frame: 175206 INFO 2025-06-27 07:23:40,284 lopcToNetCDF.py unpackLOPCbin():1013 [1] 160000 38158 676401 0 0 0 0 0 3.4 seconds, last L Frame: 175206 INFO 2025-06-27 07:23:43,379 lopcToNetCDF.py unpackLOPCbin():1013 [1] 170000 48158 678665 0 0 0 0 0 3.1 seconds, last L Frame: 175206 INFO 2025-06-27 07:23:45,035 lopcToNetCDF.py main():2345 [1] >>> Done reading file. INFO 2025-06-27 07:23:45,036 lopcToNetCDF.py main():2346 [1] lFrameCount = 175222, mFrameCount = 680003 INFO 2025-06-27 07:23:45,036 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2022.286.01/parosci.nc INFO 2025-06-27 07:23:45,036 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-27 07:23:45,036 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2022.286.01/parosci.nc INFO 2025-06-27 07:23:45,039 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1665674920.0, sensor_off_time = 1665762524.0 INFO 2025-06-27 07:23:45,039 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 87603 seconds. Expecting to read 175206 L frames from the lopc.bin file. INFO 2025-06-27 07:23:45,039 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 175206 records from the lopc.bin file. INFO 2025-06-27 07:23:45,039 lopcToNetCDF.py constructTimestampList():1340 [1] Calling correctSampleCountList() with sampleCountList[0] = 9231 and len(sampleCountList) = 175222 INFO 2025-06-27 07:23:45,057 lopcToNetCDF.py correctSampleCountList():1737 [1] Found overflows at indices: [ 56305 121841] INFO 2025-06-27 07:23:45,057 lopcToNetCDF.py correctSampleCountList():1740 [1] Assigning values from slice starting at index 56305, i = 1 INFO 2025-06-27 07:23:45,063 lopcToNetCDF.py correctSampleCountList():1740 [1] Assigning values from slice starting at index 121841, i = 2 INFO 2025-06-27 07:23:45,065 lopcToNetCDF.py correctSampleCountList():1745 [1] Original sampleCountList = [ 9231 9232 9233 ... 184452 184453 184454] INFO 2025-06-27 07:23:45,066 lopcToNetCDF.py correctSampleCountList():1746 [1] Found 0 0 values at indices: [] INFO 2025-06-27 07:23:45,066 lopcToNetCDF.py correctSampleCountList():1779 [1] Found 0 stuck values at indices: [] INFO 2025-06-27 07:23:45,066 lopcToNetCDF.py deSpike():1588 [1] d_sampleCountList = [1 1 1 ... 1 1 1] INFO 2025-06-27 07:23:45,067 lopcToNetCDF.py deSpike():1590 [1] Found 0 spike indicators at indices: [] INFO 2025-06-27 07:23:45,067 lopcToNetCDF.py correctSampleCountList():1805 [1] After despike() sampleCountList = [ 9231 9232 9233 ... 184452 184453 184454] INFO 2025-06-27 07:23:45,067 lopcToNetCDF.py constructTimestampList():1347 [1] correctSampleCountList() returned correctedSampleCountList = [ 9231 9232 9233 ... 184452 184453 184454] with len(correctedSampleCountList) = 175222 INFO 2025-06-27 07:23:45,067 lopcToNetCDF.py constructTimestampList():1358 [1] Subtracting 9231 from all values of correctedSampleCountList INFO 2025-06-27 07:23:45,067 lopcToNetCDF.py constructTimestampList():1363 [1] Constructing timestampArray from instrument corrected sampleCount and constant deltaT = 0.500000 INFO 2025-06-27 07:23:45,068 lopcToNetCDF.py constructTimestampList():1368 [1] New re-zeroed correctedSampleCountList = [0.00000e+00 5.00000e-01 1.00000e+00 ... 8.76105e+04 8.76110e+04 8.76115e+04] INFO 2025-06-27 07:23:45,069 lopcToNetCDF.py constructTimestampList():1379 [1] timestampArray = [1.66567492e+09 1.66567492e+09 1.66567492e+09 ... 1.66576253e+09 1.66576253e+09 1.66576253e+09] INFO 2025-06-27 07:23:45,069 lopcToNetCDF.py constructTimestampList():1380 [1] timestampArray[:2] = [1665674920.0 1665674920.5, ..., timestampArray[-2:] = 1665762531.0 1665762531.5] INFO 2025-06-27 07:23:45,249 lopcToNetCDF.py constructTimestampList():1389 [1] timestampList[:2] = [np.float64(1665674920.0465152), np.float64(1665674920.5465152)], ..., timestampList[-2:] = [np.float64(1665762531.0465152), np.float64(1665762531.5465152)]] INFO 2025-06-27 07:23:45,249 lopcToNetCDF.py constructTimestampList():1394 [1] Subsampling correctedSampleCountList (len = 175222) according to what got written to the netCDF file by the binning interval INFO 2025-06-27 07:23:45,249 lopcToNetCDF.py constructTimestampList():1399 [1] lFrameCountWrittenList[:2] = [20, 41], ... lFrameCountWrittenList[-2:] = [175181, 175202] INFO 2025-06-27 07:23:45,250 lopcToNetCDF.py constructTimestampList():1420 [1] len(subSampledCorrectedSampleCountList) = 8343 INFO 2025-06-27 07:23:45,250 lopcToNetCDF.py constructTimestampList():1439 [1] len(timestampList) = 175222 INFO 2025-06-27 07:23:45,250 lopcToNetCDF.py constructTimestampList():1440 [1] timestampList[:2] = [np.float64(1665674920.0465152), np.float64(1665674920.5465152)], ..., timestampList[-2:] = [np.float64(1665762531.0465152), np.float64(1665762531.5465152)]] INFO 2025-06-27 07:23:45,250 lopcToNetCDF.py constructTimestampList():1446 [1] Subsampling timestampList (len = 175222) according to what got written to the netCDF file by the binning interval INFO 2025-06-27 07:23:45,252 lopcToNetCDF.py constructTimestampList():1457 [1] Taking indices [[np.int32(19), np.int32(40)] ... [np.int32(175180), np.int32(175201)]] from timestampList to create subSampledTimestampList INFO 2025-06-27 07:23:45,261 lopcToNetCDF.py constructTimestampList():1463 [1] len(subSampledTimestampList) = 8343 INFO 2025-06-27 07:23:45,263 lopcToNetCDF.py constructTimestampList():1477 [1] Finding elements of cFrameEsecsList that != -9999 INFO 2025-06-27 07:23:45,306 lopcToNetCDF.py closeNetCDFFile():2096 [1] Writing time axis for len(tsList) = 8343 INFO 2025-06-27 07:23:45,306 lopcToNetCDF.py closeNetCDFFile():2099 [1] tsList[:1] = [np.float64(1665674929.5465152)], ..., tsList[-2:] = [np.float64(1665762511.0465152), np.float64(1665762521.5465152)] INFO 2025-06-27 07:23:45,306 lopcToNetCDF.py closeNetCDFFile():2100 [1] Begin time = 2022-10-13 15:28:49 Z INFO 2025-06-27 07:23:45,306 lopcToNetCDF.py closeNetCDFFile():2103 [1] End time = 2022-10-14 15:48:41 Z INFO 2025-06-27 07:23:45,306 lopcToNetCDF.py closeNetCDFFile():2107 [1] Writing time axis for len(cFrameEsecsList) = 8343 INFO 2025-06-27 07:23:45,306 lopcToNetCDF.py closeNetCDFFile():2111 [1] cFrameEsecsList[:1] = [1.66567953e+09], ..., cFrameEsecsList[-2:] = [1.66570158e+09 1.66570159e+09] INFO 2025-06-27 07:23:45,307 lopcToNetCDF.py closeNetCDFFile():2116 [1] Begin time = 2022-10-13 16:45:30 Z INFO 2025-06-27 07:23:45,307 lopcToNetCDF.py closeNetCDFFile():2120 [1] End time = 2022-10-13 22:53:07 Z INFO 2025-06-27 07:23:45,312 lopcToNetCDF.py main():2381 [1] Created file: /data/auv_data/dorado/missionnetcdfs/2022.286.01/lopc.nc INFO 2025-06-27 07:23:45,312 lopcToNetCDF.py main():2384 [1] Processing finished: Fri Jun 27 07:23:45 2025 Elapsed processing time from start of processing = 262 seconds INFO 2025-06-27 07:23:45,319 process.py calibrate():227 [1] Calibration steps for 2022.286.01 INFO 2025-06-27 07:23:45,938 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-27 07:23:45,940 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-27 07:23:47,933 calibrate.py _nudge_pos():1806 [1] 216: 0.110 -0.0001413 -0.0003089 1295 4.31 -4.861 -13.269 2022-10-13T15:36:19.895013632 INFO 2025-06-27 07:23:50,537 calibrate.py _nudge_pos():1806 [1] 468: 0.090 0.0001486 0.0001593 35 0.11 194.535 260.507 2022-10-13T15:40:37.897339136 INFO 2025-06-27 07:23:50,733 calibrate.py _nudge_pos():1806 [1] 487: 0.060 0.0010338 -0.0011630 12856 42.85 3.580 -5.029 2022-10-13T16:23:47.099966720 INFO 2025-06-27 07:23:58,110 calibrate.py _nudge_pos():1806 [1] 1188: 0.200 -0.0033979 0.0007153 13396 44.65 -11.291 2.969 2022-10-13T17:20:06.298475776 INFO 2025-06-27 07:24:00,928 calibrate.py _nudge_pos():1806 [1] 1451: 0.080 -0.0002056 -0.0017830 11391 37.97 -0.803 -8.702 2022-10-13T18:02:26.494460416 INFO 2025-06-27 07:24:08,148 calibrate.py _nudge_pos():1806 [1] 2126: 0.120 -0.0003895 -0.0011621 13036 43.45 -1.330 -4.956 2022-10-13T18:57:07.699682560 INFO 2025-06-27 07:24:11,037 calibrate.py _nudge_pos():1806 [1] 2393: 0.130 -0.0023754 -0.0024998 12806 42.68 -8.258 -10.852 2022-10-13T19:44:14.896006144 INFO 2025-06-27 07:24:14,348 calibrate.py _nudge_pos():1806 [1] 2698: 0.110 -0.0015331 -0.0029058 11891 39.63 -5.740 -13.585 2022-10-13T20:28:57.102262528 INFO 2025-06-27 07:24:17,316 calibrate.py _nudge_pos():1806 [1] 2967: 0.060 -0.0006633 -0.0028368 9161 30.53 -3.224 -17.216 2022-10-13T21:03:57.298389248 INFO 2025-06-27 07:24:20,399 calibrate.py _nudge_pos():1806 [1] 3245: 0.120 0.0000653 -0.0000132 300 1.00 9.719 -2.458 2022-10-13T21:09:34.295303424 INFO 2025-06-27 07:24:21,179 calibrate.py _nudge_pos():1806 [1] 3317: 0.020 0.0035251 -0.0006367 9351 31.17 16.784 -3.786 2022-10-13T21:41:55.502321408 INFO 2025-06-27 07:24:31,666 calibrate.py _nudge_pos():1806 [1] 4254: 0.070 0.0066093 -0.0005734 12411 41.37 23.701 -2.568 2022-10-13T22:38:53.698159104 INFO 2025-06-27 07:24:31,907 calibrate.py _nudge_pos():1806 [1] 4275: 0.090 0.0000286 0.0000200 90 0.30 14.302 12.519 2022-10-13T22:39:31.695556096 INFO 2025-06-27 07:24:32,269 calibrate.py _nudge_pos():1806 [1] 4307: 0.120 0.0059702 -0.0020404 17116 57.05 15.532 -6.627 2022-10-13T23:37:05.898926848 INFO 2025-06-27 07:24:39,948 calibrate.py _nudge_pos():1806 [1] 4986: 0.010 0.0115413 -0.0001513 17336 57.79 29.627 -0.485 2022-10-14T00:46:11.294947840 INFO 2025-06-27 07:24:40,318 calibrate.py _nudge_pos():1806 [1] 5018: 0.010 -0.0000140 -0.0000058 50 0.16 -12.680 -6.528 2022-10-14T00:46:52.302138624 INFO 2025-06-27 07:24:40,453 calibrate.py _nudge_pos():1806 [1] 5030: 0.090 0.0060984 -0.0023015 18580 61.93 14.614 -6.886 2022-10-14T01:48:59.496808192 INFO 2025-06-27 07:24:47,915 calibrate.py _nudge_pos():1806 [1] 5681: 0.190 0.0101498 -0.0013457 18261 60.87 24.737 -4.097 2022-10-14T03:00:41.702087168 INFO 2025-06-27 07:24:48,194 calibrate.py _nudge_pos():1806 [1] 5706: 0.190 -0.0000127 -0.0000810 30 0.10 -19.431 -155.294 2022-10-14T03:01:12.699963648 INFO 2025-06-27 07:24:48,754 calibrate.py _nudge_pos():1806 [1] 5755: 0.110 0.0061285 -0.0020320 18322 61.07 14.894 -6.166 2022-10-14T04:03:05.095646976 INFO 2025-06-27 07:24:51,330 calibrate.py _nudge_pos():1806 [1] 5978: 0.110 0.0000125 -0.0000136 15 0.05 39.705 -53.862 2022-10-14T04:06:50.100232960 INFO 2025-06-27 07:24:56,620 calibrate.py _nudge_pos():1806 [1] 6420: 0.200 0.0119697 -0.0021068 18176 60.58 29.309 -6.444 2022-10-14T05:14:46.300994304 INFO 2025-06-27 07:24:57,625 calibrate.py _nudge_pos():1806 [1] 6506: 0.080 0.0059405 -0.0023542 18827 62.75 14.050 -6.951 2022-10-14T06:18:57.697155840 INFO 2025-06-27 07:25:05,625 calibrate.py _nudge_pos():1806 [1] 7186: 0.010 0.0050591 -0.0010953 6646 22.15 33.894 -9.163 2022-10-14T06:52:25.899584256 INFO 2025-06-27 07:25:06,373 calibrate.py _nudge_pos():1806 [1] 7245: 0.130 0.0028924 -0.0018848 8081 26.93 15.937 -12.967 2022-10-14T07:20:19.894907648 INFO 2025-06-27 07:25:17,798 calibrate.py _nudge_pos():1806 [1] 8209: 0.050 0.0020806 -0.0005488 2741 9.13 33.805 -11.134 2022-10-14T07:45:31.101382912 INFO 2025-06-27 07:25:17,989 calibrate.py _nudge_pos():1806 [1] 8225: 0.030 -0.0000297 0.0000069 180 0.60 -7.377 2.149 2022-10-14T07:46:23.097820928 INFO 2025-06-27 07:25:20,722 calibrate.py _nudge_pos():1806 [1] 8460: 0.040 0.0040507 -0.0070380 13206 44.02 13.657 -29.628 2022-10-14T08:34:18.300856064 INFO 2025-06-27 07:25:20,827 calibrate.py _nudge_pos():1806 [1] 8469: 0.200 0.0000083 -0.0000165 149 0.49 2.483 -6.215 2022-10-14T08:34:56.298253056 INFO 2025-06-27 07:25:28,868 calibrate.py _nudge_pos():1806 [1] 9146: 0.060 0.0035328 -0.0058018 12296 40.98 12.792 -26.232 2022-10-14T09:27:11.503476736 INFO 2025-06-27 07:25:29,021 calibrate.py _nudge_pos():1806 [1] 9159: 0.050 -0.0000085 0.0000268 165 0.55 -2.310 9.097 2022-10-14T09:27:56.500394240 INFO 2025-06-27 07:25:31,934 calibrate.py _nudge_pos():1806 [1] 9406: 0.060 0.0018240 -0.0045386 12176 40.58 6.669 -20.723 2022-10-14T10:12:37.696719872 INFO 2025-06-27 07:25:32,211 calibrate.py _nudge_pos():1806 [1] 9429: 0.080 0.0000352 0.0000124 75 0.25 21.165 9.317 2022-10-14T10:13:14.694185216 INFO 2025-06-27 07:25:40,155 calibrate.py _nudge_pos():1806 [1] 10093: 0.090 0.0026967 -0.0035239 11721 39.07 10.243 -16.715 2022-10-14T11:03:21.898177792 INFO 2025-06-27 07:25:43,290 calibrate.py _nudge_pos():1806 [1] 10357: 0.070 0.0030170 -0.0009856 11976 39.92 11.214 -4.575 2022-10-14T11:47:40.096078592 INFO 2025-06-27 07:25:43,501 calibrate.py _nudge_pos():1806 [1] 10375: 0.090 0.0000612 0.0000378 75 0.25 36.794 28.370 2022-10-14T11:48:12.103886080 INFO 2025-06-27 07:25:46,369 calibrate.py _nudge_pos():1806 [1] 10615: 0.070 0.0031915 -0.0009627 11511 38.37 12.342 -4.649 2022-10-14T12:30:33.299802368 INFO 2025-06-27 07:25:49,506 calibrate.py _nudge_pos():1806 [1] 10881: 0.180 0.0002596 -0.0026845 8515 28.38 1.357 -17.528 2022-10-14T13:03:21.294985216 INFO 2025-06-27 07:27:48,682 calibrate.py _nudge_pos():1862 [1] 20754: - - - 4 0.01 - - INFO 2025-06-27 07:27:48,682 calibrate.py _nudge_pos():1868 [1] Points in final series = 437040 INFO 2025-06-27 07:28:03,635 calibrate.py _hs2_process():2400 [1] Number of bad hs2 points: 2 of 350248 INFO 2025-06-27 07:28:06,476 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: -9 seconds, d_end_time_diff: -1 seconds INFO 2025-06-27 07:28:09,753 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 9 seconds, d_end_time_diff: -1 seconds INFO 2025-06-27 07:28:12,417 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 9 seconds, d_end_time_diff: -1 seconds INFO 2025-06-27 07:28:12,422 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2022.286.01/ctd1.nc INFO 2025-06-27 07:28:12,424 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd1_salinity values to NaN INFO 2025-06-27 07:28:12,424 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-27 07:28:12,424 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-27 07:28:15,634 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 9 seconds, d_end_time_diff: 0 seconds INFO 2025-06-27 07:28:18,299 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 9 seconds, d_end_time_diff: 0 seconds INFO 2025-06-27 07:28:18,303 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2022.286.01/ctd2.nc INFO 2025-06-27 07:28:18,305 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-27 07:28:18,305 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-27 07:28:18,305 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-27 07:28:18,306 calibrate.py process_logs():3542 [1] Error processing isus: isus has no orig_data - likely a missing or zero-sized .log file in missionlogs/2022.286.01 INFO 2025-06-27 07:28:18,370 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-27 07:28:22,487 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 61 62 63 64 65 66 67 68 69 180 181 182 300 301 302] INFO 2025-06-27 07:28:23,272 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -14 seconds, d_end_time_diff: -1 seconds INFO 2025-06-27 07:30:28,133 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2022.286.01/dorado_2022.286.01_cal.nc INFO 2025-06-27 07:30:28,669 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_par, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, ecopuck_bbp700, ecopuck_cdom, ecopuck_chl, ecopuck_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, lopc_LCcount, lopc_countListSum, lopc_flowSpeed, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-27 07:30:28,679 process.py align():251 [1] Alignment steps for 2022.286.01 INFO 2025-06-27 07:30:28,794 align.py process_cal():139 [1] Processing dorado_2022.286.01_cal.nc from /data/auv_data/dorado/missionnetcdfs/2022.286.01 INFO 2025-06-27 07:30:28,904 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-27 07:30:28,915 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-27 07:30:29,214 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-27 07:30:29,233 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-27 07:30:29,500 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-27 07:30:29,520 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-27 07:30:29,686 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-27 07:30:29,686 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-27 07:30:29,805 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-27 07:30:29,823 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-27 07:30:30,084 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2022.286.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 07:30:30,097 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 07:30:30,330 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2022.286.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 07:30:30,342 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 07:30:30,575 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2022.286.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 07:30:30,587 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 07:30:30,818 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2022.286.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 07:30:30,831 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 07:30:31,066 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2022.286.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 07:30:31,078 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 07:30:31,307 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2022.286.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 07:30:31,319 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 07:30:31,549 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2022.286.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 07:30:31,561 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 07:30:31,791 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2022.286.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 07:30:31,803 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 07:30:32,036 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2022.286.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 07:30:32,048 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 07:30:32,278 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2022.286.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 07:30:32,293 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 07:30:32,525 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2022.286.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 07:30:32,539 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 07:30:32,771 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2022.286.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 07:30:32,783 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 07:30:33,034 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2022.286.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 07:30:33,046 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 07:30:33,282 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2022.286.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 07:30:33,293 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 07:30:33,525 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2022.286.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 07:30:33,537 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 07:30:33,771 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2022.286.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 07:30:33,783 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 07:30:34,017 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2022.286.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 07:30:34,030 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 07:30:34,263 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2022.286.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 07:30:34,275 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 07:30:34,505 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2022.286.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 07:30:34,518 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 07:30:34,750 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2022.286.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 07:30:34,762 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 07:30:34,993 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2022.286.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 07:30:35,009 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 07:30:35,238 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2022.286.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 07:30:35,249 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 07:30:35,487 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2022.286.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 07:30:35,499 align.py process_cal():249 [1] ctd2_par: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 07:30:35,792 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 0.98 INFO 2025-06-27 07:30:35,991 align.py process_cal():249 [1] biolume_avg_biolume: instrument_sample_rate_hz = 0.98 INFO 2025-06-27 07:30:36,422 align.py process_cal():249 [1] biolume_raw: instrument_sample_rate_hz = 58.99 INFO 2025-06-27 07:30:38,764 align.py process_cal():249 [1] lopc_countListSum: instrument_sample_rate_hz = 0.10 INFO 2025-06-27 07:30:38,921 align.py process_cal():249 [1] lopc_transCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-27 07:30:39,079 align.py process_cal():249 [1] lopc_nonTransCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-27 07:30:39,235 align.py process_cal():249 [1] lopc_LCcount: instrument_sample_rate_hz = 0.10 INFO 2025-06-27 07:30:39,403 align.py process_cal():249 [1] lopc_flowSpeed: instrument_sample_rate_hz = 0.10 INFO 2025-06-27 07:30:39,615 align.py process_cal():249 [1] ecopuck_bbp700: instrument_sample_rate_hz = 10.37 INFO 2025-06-27 07:30:40,178 align.py process_cal():249 [1] ecopuck_cdom: instrument_sample_rate_hz = 10.37 INFO 2025-06-27 07:30:40,669 align.py process_cal():249 [1] ecopuck_chl: instrument_sample_rate_hz = 10.37 INFO 2025-06-27 07:30:41,198 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-27 07:30:41,393 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2022.286.01/dorado_2022.286.01_align.nc INFO 2025-06-27 07:30:41,943 align.py write_netcdf():342 [1] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_par, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, ecopuck_bbp700, ecopuck_cdom, ecopuck_chl, ecopuck_depth, ecopuck_latitude, ecopuck_longitude, ecopuck_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, lopc_LCcount, lopc_countListSum, lopc_depth, lopc_flowSpeed, lopc_latitude, lopc_longitude, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-27 07:30:41,947 process.py resample():273 [1] Resampling steps for 2022.286.01 INFO 2025-06-27 07:30:41,948 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-27 07:30:42,051 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2022.286.01/dorado_2022.286.01_align.nc mission netCDF file INFO 2025-06-27 07:30:42,064 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2022.286.01/dorado_2022.286.01_align.nc mission netCDF file INFO 2025-06-27 07:30:42,067 resample.py get_mission_start_end():1145 [1] navigation: 2022-10-13T15:29:15.344097280 to 2022-10-14T15:48:43.895240448 (0 days 00:00:00.099993344 before mission_end) INFO 2025-06-27 07:30:42,070 resample.py get_mission_start_end():1145 [1] hs2 : 2022-10-13T15:28:31.357110528 to 2022-10-14T15:48:43.835244544 (0 days 00:00:00.159989248 before mission_end) INFO 2025-06-27 07:30:42,073 resample.py get_mission_start_end():1145 [1] ctd1 : 2022-10-13T15:28:49.205887744 to 2022-10-14T15:48:43.945237248 (0 days 00:00:00.049996544 before mission_end) INFO 2025-06-27 07:30:42,076 resample.py get_mission_start_end():1145 [1] ctd2 : 2022-10-13T15:28:49.205887744 to 2022-10-14T15:48:43.995233792 (0 days 00:00:00 before mission_end) INFO 2025-06-27 07:30:42,078 resample.py get_mission_start_end():1145 [1] biolume : 2022-10-13T15:28:25.637468160 to 2022-10-14T15:48:42.565297408 (0 days 00:00:01.429936384 before mission_end) INFO 2025-06-27 07:30:42,080 resample.py get_mission_start_end():1145 [1] lopc : 2022-10-13T15:28:49.546515200 to 2022-10-14T15:48:41.546515200 (0 days 00:00:02.448718592 before mission_end) INFO 2025-06-27 07:30:42,084 resample.py get_mission_start_end():1145 [1] ecopuck : 2022-10-13T15:28:25.147536128 to 2022-10-14T15:48:43.985234432 (0 days 00:00:00.009999360 before mission_end) INFO 2025-06-27 07:30:42,087 resample.py get_mission_start_end():1145 [1] tailcone : 2022-10-13T15:28:35.376835328 to 2022-10-14T15:48:43.975235328 (0 days 00:00:00.019998464 before mission_end) INFO 2025-06-27 07:30:42,088 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2022.286.01/dorado_2022.286.01_align.nc mission netCDF file INFO 2025-06-27 07:30:42,089 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:42,953 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:43,092 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:43,228 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:43,366 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:43,483 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:43,611 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:43,728 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:43,843 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:43,950 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:44,057 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:44,167 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:44,275 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:44,385 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:44,494 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:44,605 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:44,714 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:44,822 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:44,934 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:45,045 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:45,156 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:45,267 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:45,377 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:45,488 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:45,599 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:45,709 resample.py resample_variable():1031 [1] Resampling ctd2_par with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:45,752 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:45,790 resample.py resample_variable():1031 [1] Resampling biolume_avg_biolume with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:45,802 resample.py set_proxy_parameters():520 [1] Setting biolume proxy parameters for period4 INFO 2025-06-27 07:30:45,802 resample.py add_biolume_proxies():549 [1] Adding biolume proxy variables computed from biolume_raw INFO 2025-06-27 07:30:49,144 resample.py add_biolume_proxies():595 [1] Using flash_threshold = 1.0000e+11 INFO 2025-06-27 07:30:50,570 resample.py add_biolume_proxies():633 [1] Zero flow values found: 87617 of 87618 - replaced with 350 ml/s INFO 2025-06-27 07:30:50,570 resample.py add_biolume_proxies():638 [1] Computing flashes per liter: nbflash_high, nbflash_low INFO 2025-06-27 07:30:51,023 resample.py add_biolume_proxies():666 [1] Saving flash intensity: biolume_intflash - the upper bound of the background envelope INFO 2025-06-27 07:30:51,217 resample.py add_biolume_proxies():683 [1] Saving Background bioluminescence (dinoflagellates proxy) INFO 2025-06-27 07:30:51,321 resample.py select_nighttime_bl_raw():408 [1] Extracting biolume_raw data between sunset 2022-10-14 02:29:15.697904128 and sunrise 2022-10-14 13:09:15.904076032 INFO 2025-06-27 07:30:51,746 resample.py add_biolume_proxies():716 [1] Using proxy_ratio_adinos = 3.8019e+13 INFO 2025-06-27 07:30:51,747 resample.py add_biolume_proxies():717 [1] Using proxy_cal_factor = 0.004986 INFO 2025-06-27 07:30:52,011 resample.py correct_biolume_proxies():790 [1] correct proxies: df_p depth count=87618 nans=0, resampled_nc depth count=87596 nans=0 INFO 2025-06-27 07:30:52,018 resample.py correct_biolume_proxies():808 [1] correct proxies: df_p max profile=88 (nans=0), resampled_nc max profile=88 (nans=0) INFO 2025-06-27 07:30:52,050 resample.py correct_biolume_proxies():885 [1] Processing profile=1 for proxy correction: total_points=288 > thresh=3 ? INFO 2025-06-27 07:30:52,051 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,053 resample.py correct_biolume_proxies():885 [1] Processing profile=2 for proxy correction: total_points=293 > thresh=3 ? INFO 2025-06-27 07:30:52,053 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,055 resample.py correct_biolume_proxies():885 [1] Processing profile=3 for proxy correction: total_points=221 > thresh=3 ? INFO 2025-06-27 07:30:52,055 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,057 resample.py correct_biolume_proxies():885 [1] Processing profile=4 for proxy correction: total_points=2602 > thresh=3 ? INFO 2025-06-27 07:30:52,058 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,060 resample.py correct_biolume_proxies():885 [1] Processing profile=5 for proxy correction: total_points=346 > thresh=3 ? INFO 2025-06-27 07:30:52,060 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,062 resample.py correct_biolume_proxies():885 [1] Processing profile=6 for proxy correction: total_points=2804 > thresh=3 ? INFO 2025-06-27 07:30:52,062 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,064 resample.py correct_biolume_proxies():885 [1] Processing profile=7 for proxy correction: total_points=143 > thresh=3 ? INFO 2025-06-27 07:30:52,065 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,066 resample.py correct_biolume_proxies():885 [1] Processing profile=8 for proxy correction: total_points=2469 > thresh=3 ? INFO 2025-06-27 07:30:52,067 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,069 resample.py correct_biolume_proxies():885 [1] Processing profile=9 for proxy correction: total_points=199 > thresh=3 ? INFO 2025-06-27 07:30:52,069 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,071 resample.py correct_biolume_proxies():885 [1] Processing profile=10 for proxy correction: total_points=2704 > thresh=3 ? INFO 2025-06-27 07:30:52,072 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,074 resample.py correct_biolume_proxies():885 [1] Processing profile=11 for proxy correction: total_points=169 > thresh=3 ? INFO 2025-06-27 07:30:52,074 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,076 resample.py correct_biolume_proxies():885 [1] Processing profile=12 for proxy correction: total_points=2729 > thresh=3 ? INFO 2025-06-27 07:30:52,076 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,078 resample.py correct_biolume_proxies():885 [1] Processing profile=13 for proxy correction: total_points=130 > thresh=3 ? INFO 2025-06-27 07:30:52,079 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,080 resample.py correct_biolume_proxies():885 [1] Processing profile=14 for proxy correction: total_points=2511 > thresh=3 ? INFO 2025-06-27 07:30:52,081 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,083 resample.py correct_biolume_proxies():885 [1] Processing profile=15 for proxy correction: total_points=176 > thresh=3 ? INFO 2025-06-27 07:30:52,083 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,085 resample.py correct_biolume_proxies():885 [1] Processing profile=16 for proxy correction: total_points=1935 > thresh=3 ? INFO 2025-06-27 07:30:52,085 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,087 resample.py correct_biolume_proxies():885 [1] Processing profile=17 for proxy correction: total_points=91 > thresh=3 ? INFO 2025-06-27 07:30:52,087 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,089 resample.py correct_biolume_proxies():885 [1] Processing profile=18 for proxy correction: total_points=40 > thresh=3 ? INFO 2025-06-27 07:30:52,090 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,091 resample.py correct_biolume_proxies():885 [1] Processing profile=19 for proxy correction: total_points=1045 > thresh=3 ? INFO 2025-06-27 07:30:52,092 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,094 resample.py correct_biolume_proxies():885 [1] Processing profile=20 for proxy correction: total_points=1058 > thresh=3 ? INFO 2025-06-27 07:30:52,094 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,096 resample.py correct_biolume_proxies():885 [1] Processing profile=21 for proxy correction: total_points=312 > thresh=3 ? INFO 2025-06-27 07:30:52,096 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,098 resample.py correct_biolume_proxies():885 [1] Processing profile=22 for proxy correction: total_points=2453 > thresh=3 ? INFO 2025-06-27 07:30:52,098 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,100 resample.py correct_biolume_proxies():885 [1] Processing profile=23 for proxy correction: total_points=712 > thresh=3 ? INFO 2025-06-27 07:30:52,101 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,102 resample.py correct_biolume_proxies():885 [1] Processing profile=24 for proxy correction: total_points=245 > thresh=3 ? INFO 2025-06-27 07:30:52,103 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,105 resample.py correct_biolume_proxies():885 [1] Processing profile=25 for proxy correction: total_points=219 > thresh=3 ? INFO 2025-06-27 07:30:52,105 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,107 resample.py correct_biolume_proxies():885 [1] Processing profile=26 for proxy correction: total_points=274 > thresh=3 ? INFO 2025-06-27 07:30:52,107 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,109 resample.py correct_biolume_proxies():885 [1] Processing profile=27 for proxy correction: total_points=217 > thresh=3 ? INFO 2025-06-27 07:30:52,109 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,111 resample.py correct_biolume_proxies():885 [1] Processing profile=28 for proxy correction: total_points=226 > thresh=3 ? INFO 2025-06-27 07:30:52,112 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,113 resample.py correct_biolume_proxies():885 [1] Processing profile=29 for proxy correction: total_points=288 > thresh=3 ? INFO 2025-06-27 07:30:52,114 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,115 resample.py correct_biolume_proxies():885 [1] Processing profile=30 for proxy correction: total_points=205 > thresh=3 ? INFO 2025-06-27 07:30:52,116 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,118 resample.py correct_biolume_proxies():885 [1] Processing profile=31 for proxy correction: total_points=381 > thresh=3 ? INFO 2025-06-27 07:30:52,118 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,120 resample.py correct_biolume_proxies():885 [1] Processing profile=32 for proxy correction: total_points=961 > thresh=3 ? INFO 2025-06-27 07:30:52,120 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,122 resample.py correct_biolume_proxies():885 [1] Processing profile=33 for proxy correction: total_points=312 > thresh=3 ? INFO 2025-06-27 07:30:52,123 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,124 resample.py correct_biolume_proxies():885 [1] Processing profile=34 for proxy correction: total_points=3417 > thresh=3 ? INFO 2025-06-27 07:30:52,125 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,127 resample.py correct_biolume_proxies():885 [1] Processing profile=35 for proxy correction: total_points=1042 > thresh=3 ? INFO 2025-06-27 07:30:52,127 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,129 resample.py correct_biolume_proxies():885 [1] Processing profile=36 for proxy correction: total_points=249 > thresh=3 ? INFO 2025-06-27 07:30:52,130 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,131 resample.py correct_biolume_proxies():885 [1] Processing profile=37 for proxy correction: total_points=218 > thresh=3 ? INFO 2025-06-27 07:30:52,132 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,134 resample.py correct_biolume_proxies():885 [1] Processing profile=38 for proxy correction: total_points=272 > thresh=3 ? INFO 2025-06-27 07:30:52,134 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,136 resample.py correct_biolume_proxies():885 [1] Processing profile=39 for proxy correction: total_points=215 > thresh=3 ? INFO 2025-06-27 07:30:52,136 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,138 resample.py correct_biolume_proxies():885 [1] Processing profile=40 for proxy correction: total_points=198 > thresh=3 ? INFO 2025-06-27 07:30:52,139 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,141 resample.py correct_biolume_proxies():885 [1] Processing profile=41 for proxy correction: total_points=260 > thresh=3 ? INFO 2025-06-27 07:30:52,141 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,143 resample.py correct_biolume_proxies():885 [1] Processing profile=42 for proxy correction: total_points=235 > thresh=3 ? INFO 2025-06-27 07:30:52,144 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,145 resample.py correct_biolume_proxies():885 [1] Processing profile=43 for proxy correction: total_points=401 > thresh=3 ? INFO 2025-06-27 07:30:52,146 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,148 resample.py correct_biolume_proxies():885 [1] Processing profile=44 for proxy correction: total_points=930 > thresh=3 ? INFO 2025-06-27 07:30:52,148 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,150 resample.py correct_biolume_proxies():885 [1] Processing profile=45 for proxy correction: total_points=311 > thresh=3 ? INFO 2025-06-27 07:30:52,151 resample.py correct_biolume_proxies():897 [1] Correcting proxies: valid adinos=0 < thresh=3 -- all NaN so skip INFO 2025-06-27 07:30:52,151 resample.py correct_biolume_proxies():866 [1] Processing profile=46 for proxy correction: found sun event -- set NaN INFO 2025-06-27 07:30:52,155 resample.py correct_biolume_proxies():885 [1] Processing profile=47 for proxy correction: total_points=945 > thresh=3 ? INFO 2025-06-27 07:30:52,157 resample.py correct_biolume_proxies():930 [1] Correcting proxies: valid adinos=756 > thresh=3 -- using fluoBL_corr=0.8370, total_size_idepth=756, nans=0, min_depth=-0.3012, max_depth=14.3105 INFO 2025-06-27 07:30:52,164 resample.py correct_biolume_proxies():885 [1] Processing profile=48 for proxy correction: total_points=245 > thresh=3 ? INFO 2025-06-27 07:30:52,166 resample.py correct_biolume_proxies():930 [1] Correcting proxies: valid adinos=37 > thresh=3 -- using fluoBL_corr=0.8833, total_size_idepth=37, nans=2, min_depth=3.2311, max_depth=15.0130 INFO 2025-06-27 07:30:52,172 resample.py correct_biolume_proxies():885 [1] Processing profile=49 for proxy correction: total_points=213 > thresh=3 ? INFO 2025-06-27 07:30:52,174 resample.py correct_biolume_proxies():930 [1] Correcting proxies: valid adinos=31 > thresh=3 -- using fluoBL_corr=0.7456, total_size_idepth=31, nans=0, min_depth=3.2678, max_depth=16.0476 INFO 2025-06-27 07:30:52,181 resample.py correct_biolume_proxies():885 [1] Processing profile=50 for proxy correction: total_points=266 > thresh=3 ? INFO 2025-06-27 07:30:52,183 resample.py correct_biolume_proxies():930 [1] Correcting proxies: valid adinos=49 > thresh=3 -- using fluoBL_corr=0.8997, total_size_idepth=49, nans=2, min_depth=3.5355, max_depth=17.9009 INFO 2025-06-27 07:30:52,190 resample.py correct_biolume_proxies():885 [1] Processing profile=51 for proxy correction: total_points=214 > thresh=3 ? INFO 2025-06-27 07:30:52,191 resample.py correct_biolume_proxies():930 [1] Correcting proxies: valid adinos=36 > thresh=3 -- using fluoBL_corr=0.9216, total_size_idepth=36, nans=1, min_depth=3.5873, max_depth=19.1990 INFO 2025-06-27 07:30:52,198 resample.py correct_biolume_proxies():885 [1] Processing profile=52 for proxy correction: total_points=231 > thresh=3 ? INFO 2025-06-27 07:30:52,200 resample.py correct_biolume_proxies():930 [1] Correcting proxies: valid adinos=5 > thresh=3 -- using fluoBL_corr=-0.5544, total_size_idepth=5, nans=1, min_depth=17.0436, max_depth=17.7224 INFO 2025-06-27 07:30:52,207 resample.py correct_biolume_proxies():885 [1] Processing profile=53 for proxy correction: total_points=291 > thresh=3 ? INFO 2025-06-27 07:30:52,208 resample.py correct_biolume_proxies():930 [1] Correcting proxies: valid adinos=4 > thresh=3 -- using fluoBL_corr=0.0555, total_size_idepth=4, nans=1, min_depth=17.1233, max_depth=17.8941 INFO 2025-06-27 07:30:52,215 resample.py correct_biolume_proxies():885 [1] Processing profile=54 for proxy correction: total_points=211 > thresh=3 ? INFO 2025-06-27 07:30:52,216 resample.py correct_biolume_proxies():905 [1] Correcting proxies: valid adinos=0 < thresh=3 -- using fluoBL_corr=1.0000, total_size_adinos=211, nans=0 INFO 2025-06-27 07:30:52,222 resample.py correct_biolume_proxies():885 [1] Processing profile=55 for proxy correction: total_points=381 > thresh=3 ? INFO 2025-06-27 07:30:52,223 resample.py correct_biolume_proxies():905 [1] Correcting proxies: valid adinos=0 < thresh=3 -- using fluoBL_corr=1.0000, total_size_adinos=381, nans=6 INFO 2025-06-27 07:30:52,230 resample.py correct_biolume_proxies():885 [1] Processing profile=56 for proxy correction: total_points=978 > thresh=3 ? INFO 2025-06-27 07:30:52,231 resample.py correct_biolume_proxies():930 [1] Correcting proxies: valid adinos=327 > thresh=3 -- using fluoBL_corr=-0.4834, total_size_idepth=329, nans=31, min_depth=-0.7088, max_depth=20.8295 INFO 2025-06-27 07:30:52,238 resample.py correct_biolume_proxies():885 [1] Processing profile=57 for proxy correction: total_points=308 > thresh=3 ? INFO 2025-06-27 07:30:52,240 resample.py correct_biolume_proxies():930 [1] Correcting proxies: valid adinos=308 > thresh=3 -- using fluoBL_corr=-0.6393, total_size_idepth=308, nans=0, min_depth=-0.4882, max_depth=12.4396 INFO 2025-06-27 07:30:52,247 resample.py correct_biolume_proxies():885 [1] Processing profile=58 for proxy correction: total_points=3604 > thresh=3 ? INFO 2025-06-27 07:30:52,249 resample.py correct_biolume_proxies():930 [1] Correcting proxies: valid adinos=3604 > thresh=3 -- using fluoBL_corr=-0.0958, total_size_idepth=3604, nans=0, min_depth=-0.2861, max_depth=12.4303 INFO 2025-06-27 07:30:52,257 resample.py correct_biolume_proxies():885 [1] Processing profile=59 for proxy correction: total_points=1090 > thresh=3 ? INFO 2025-06-27 07:30:52,258 resample.py correct_biolume_proxies():930 [1] Correcting proxies: valid adinos=919 > thresh=3 -- using fluoBL_corr=0.0068, total_size_idepth=922, nans=0, min_depth=-0.2779, max_depth=21.1608 INFO 2025-06-27 07:30:52,265 resample.py correct_biolume_proxies():885 [1] Processing profile=60 for proxy correction: total_points=249 > thresh=3 ? INFO 2025-06-27 07:30:52,267 resample.py correct_biolume_proxies():930 [1] Correcting proxies: valid adinos=50 > thresh=3 -- using fluoBL_corr=-0.4501, total_size_idepth=50, nans=0, min_depth=3.5485, max_depth=20.5863 INFO 2025-06-27 07:30:52,273 resample.py correct_biolume_proxies():885 [1] Processing profile=61 for proxy correction: total_points=217 > thresh=3 ? INFO 2025-06-27 07:30:52,275 resample.py correct_biolume_proxies():930 [1] Correcting proxies: valid adinos=43 > thresh=3 -- using fluoBL_corr=-0.3208, total_size_idepth=43, nans=2, min_depth=3.5966, max_depth=19.5070 INFO 2025-06-27 07:30:52,282 resample.py correct_biolume_proxies():885 [1] Processing profile=62 for proxy correction: total_points=272 > thresh=3 ? INFO 2025-06-27 07:30:52,283 resample.py correct_biolume_proxies():930 [1] Correcting proxies: valid adinos=48 > thresh=3 -- using fluoBL_corr=0.5487, total_size_idepth=51, nans=0, min_depth=3.5745, max_depth=20.3043 INFO 2025-06-27 07:30:52,290 resample.py correct_biolume_proxies():885 [1] Processing profile=63 for proxy correction: total_points=220 > thresh=3 ? INFO 2025-06-27 07:30:52,292 resample.py correct_biolume_proxies():930 [1] Correcting proxies: valid adinos=39 > thresh=3 -- using fluoBL_corr=0.0826, total_size_idepth=39, nans=0, min_depth=3.6372, max_depth=18.4716 INFO 2025-06-27 07:30:52,298 resample.py correct_biolume_proxies():885 [1] Processing profile=64 for proxy correction: total_points=193 > thresh=3 ? INFO 2025-06-27 07:30:52,299 resample.py correct_biolume_proxies():905 [1] Correcting proxies: valid adinos=0 < thresh=3 -- using fluoBL_corr=1.0000, total_size_adinos=193, nans=48 INFO 2025-06-27 07:30:52,306 resample.py correct_biolume_proxies():885 [1] Processing profile=65 for proxy correction: total_points=263 > thresh=3 ? INFO 2025-06-27 07:30:52,306 resample.py correct_biolume_proxies():905 [1] Correcting proxies: valid adinos=0 < thresh=3 -- using fluoBL_corr=1.0000, total_size_adinos=263, nans=0 INFO 2025-06-27 07:30:52,313 resample.py correct_biolume_proxies():885 [1] Processing profile=66 for proxy correction: total_points=246 > thresh=3 ? INFO 2025-06-27 07:30:52,314 resample.py correct_biolume_proxies():905 [1] Correcting proxies: valid adinos=0 < thresh=3 -- using fluoBL_corr=1.0000, total_size_adinos=246, nans=5 INFO 2025-06-27 07:30:52,320 resample.py correct_biolume_proxies():885 [1] Processing profile=67 for proxy correction: total_points=408 > thresh=3 ? INFO 2025-06-27 07:30:52,321 resample.py correct_biolume_proxies():905 [1] Correcting proxies: valid adinos=0 < thresh=3 -- using fluoBL_corr=1.0000, total_size_adinos=408, nans=8 INFO 2025-06-27 07:30:52,328 resample.py correct_biolume_proxies():885 [1] Processing profile=68 for proxy correction: total_points=955 > thresh=3 ? INFO 2025-06-27 07:30:52,329 resample.py correct_biolume_proxies():930 [1] Correcting proxies: valid adinos=337 > thresh=3 -- using fluoBL_corr=-0.7228, total_size_idepth=337, nans=15, min_depth=-0.5121, max_depth=23.8092 INFO 2025-06-27 07:30:52,336 resample.py correct_biolume_proxies():885 [1] Processing profile=69 for proxy correction: total_points=360 > thresh=3 ? INFO 2025-06-27 07:30:52,338 resample.py correct_biolume_proxies():930 [1] Correcting proxies: valid adinos=357 > thresh=3 -- using fluoBL_corr=-0.7109, total_size_idepth=360, nans=0, min_depth=-0.5742, max_depth=11.6971 INFO 2025-06-27 07:30:52,345 resample.py correct_biolume_proxies():885 [1] Processing profile=70 for proxy correction: total_points=1235 > thresh=3 ? INFO 2025-06-27 07:30:52,347 resample.py correct_biolume_proxies():930 [1] Correcting proxies: valid adinos=1235 > thresh=3 -- using fluoBL_corr=0.8347, total_size_idepth=1235, nans=0, min_depth=-0.4004, max_depth=11.6760 INFO 2025-06-27 07:30:52,354 resample.py correct_biolume_proxies():885 [1] Processing profile=71 for proxy correction: total_points=900 > thresh=3 ? INFO 2025-06-27 07:30:52,355 resample.py correct_biolume_proxies():930 [1] Correcting proxies: valid adinos=329 > thresh=3 -- using fluoBL_corr=0.5866, total_size_idepth=329, nans=12, min_depth=-0.2307, max_depth=18.6247 INFO 2025-06-27 07:30:52,363 resample.py correct_biolume_proxies():885 [1] Processing profile=72 for proxy correction: total_points=1008 > thresh=3 ? INFO 2025-06-27 07:30:52,364 resample.py correct_biolume_proxies():930 [1] Correcting proxies: valid adinos=304 > thresh=3 -- using fluoBL_corr=-0.1532, total_size_idepth=315, nans=52, min_depth=-0.5891, max_depth=15.8558 INFO 2025-06-27 07:30:52,371 resample.py correct_biolume_proxies():885 [1] Processing profile=73 for proxy correction: total_points=217 > thresh=3 ? INFO 2025-06-27 07:30:52,373 resample.py correct_biolume_proxies():930 [1] Correcting proxies: valid adinos=217 > thresh=3 -- using fluoBL_corr=0.7083, total_size_idepth=217, nans=0, min_depth=-0.4108, max_depth=17.4130 INFO 2025-06-27 07:30:52,380 resample.py correct_biolume_proxies():885 [1] Processing profile=74 for proxy correction: total_points=629 > thresh=3 ? INFO 2025-06-27 07:30:52,381 resample.py correct_biolume_proxies():930 [1] Correcting proxies: valid adinos=605 > thresh=3 -- using fluoBL_corr=0.6066, total_size_idepth=629, nans=0, min_depth=-0.4635, max_depth=17.3677 INFO 2025-06-27 07:30:52,388 resample.py correct_biolume_proxies():885 [1] Processing profile=75 for proxy correction: total_points=150 > thresh=3 ? INFO 2025-06-27 07:30:52,390 resample.py correct_biolume_proxies():930 [1] Correcting proxies: valid adinos=136 > thresh=3 -- using fluoBL_corr=0.5516, total_size_idepth=150, nans=0, min_depth=-0.3504, max_depth=16.4902 INFO 2025-06-27 07:30:52,397 resample.py correct_biolume_proxies():885 [1] Processing profile=76 for proxy correction: total_points=2835 > thresh=3 ? INFO 2025-06-27 07:30:52,399 resample.py correct_biolume_proxies():930 [1] Correcting proxies: valid adinos=2789 > thresh=3 -- using fluoBL_corr=-0.4571, total_size_idepth=2835, nans=0, min_depth=-0.5312, max_depth=16.4600 INFO 2025-06-27 07:30:52,406 resample.py correct_biolume_proxies():885 [1] Processing profile=77 for proxy correction: total_points=229 > thresh=3 ? INFO 2025-06-27 07:30:52,408 resample.py correct_biolume_proxies():930 [1] Correcting proxies: valid adinos=196 > thresh=3 -- using fluoBL_corr=-0.9324, total_size_idepth=229, nans=0, min_depth=-0.4738, max_depth=16.6764 INFO 2025-06-27 07:30:52,415 resample.py correct_biolume_proxies():885 [1] Processing profile=78 for proxy correction: total_points=2483 > thresh=3 ? INFO 2025-06-27 07:30:52,417 resample.py correct_biolume_proxies():930 [1] Correcting proxies: valid adinos=528 > thresh=3 -- using fluoBL_corr=0.8114, total_size_idepth=2483, nans=0, min_depth=-0.5264, max_depth=16.6524 INFO 2025-06-27 07:30:52,425 resample.py correct_biolume_proxies():885 [1] Processing profile=79 for proxy correction: total_points=238 > thresh=3 ? INFO 2025-06-27 07:30:52,426 resample.py correct_biolume_proxies():930 [1] Correcting proxies: valid adinos=198 > thresh=3 -- using fluoBL_corr=-0.5691, total_size_idepth=198, nans=0, min_depth=-0.4140, max_depth=6.7032 INFO 2025-06-27 07:30:52,434 resample.py correct_biolume_proxies():885 [1] Processing profile=80 for proxy correction: total_points=2656 > thresh=3 ? INFO 2025-06-27 07:30:52,435 resample.py correct_biolume_proxies():930 [1] Correcting proxies: valid adinos=299 > thresh=3 -- using fluoBL_corr=-0.3577, total_size_idepth=299, nans=0, min_depth=-0.4142, max_depth=9.7869 INFO 2025-06-27 07:30:52,444 resample.py correct_biolume_proxies():885 [1] Processing profile=81 for proxy correction: total_points=321 > thresh=3 ? INFO 2025-06-27 07:30:52,446 resample.py correct_biolume_proxies():930 [1] Correcting proxies: valid adinos=308 > thresh=3 -- using fluoBL_corr=-0.4724, total_size_idepth=310, nans=0, min_depth=-0.4166, max_depth=14.4006 INFO 2025-06-27 07:30:52,453 resample.py correct_biolume_proxies():885 [1] Processing profile=82 for proxy correction: total_points=2356 > thresh=3 ? INFO 2025-06-27 07:30:52,455 resample.py correct_biolume_proxies():930 [1] Correcting proxies: valid adinos=506 > thresh=3 -- using fluoBL_corr=0.7397, total_size_idepth=2321, nans=0, min_depth=-0.4685, max_depth=16.0695 INFO 2025-06-27 07:30:52,463 resample.py correct_biolume_proxies():885 [1] Processing profile=83 for proxy correction: total_points=271 > thresh=3 ? INFO 2025-06-27 07:30:52,465 resample.py correct_biolume_proxies():930 [1] Correcting proxies: valid adinos=240 > thresh=3 -- using fluoBL_corr=0.2599, total_size_idepth=267, nans=0, min_depth=-0.4330, max_depth=16.5374 INFO 2025-06-27 07:30:52,472 resample.py correct_biolume_proxies():885 [1] Processing profile=84 for proxy correction: total_points=2557 > thresh=3 ? INFO 2025-06-27 07:30:52,474 resample.py correct_biolume_proxies():930 [1] Correcting proxies: valid adinos=791 > thresh=3 -- using fluoBL_corr=0.4499, total_size_idepth=2553, nans=0, min_depth=-0.3629, max_depth=16.2632 INFO 2025-06-27 07:30:52,482 resample.py correct_biolume_proxies():885 [1] Processing profile=85 for proxy correction: total_points=83 > thresh=3 ? INFO 2025-06-27 07:30:52,484 resample.py correct_biolume_proxies():930 [1] Correcting proxies: valid adinos=76 > thresh=3 -- using fluoBL_corr=0.7172, total_size_idepth=76, nans=0, min_depth=-0.3598, max_depth=15.2410 INFO 2025-06-27 07:30:52,491 resample.py correct_biolume_proxies():885 [1] Processing profile=86 for proxy correction: total_points=2385 > thresh=3 ? INFO 2025-06-27 07:30:52,492 resample.py correct_biolume_proxies():930 [1] Correcting proxies: valid adinos=760 > thresh=3 -- using fluoBL_corr=0.4724, total_size_idepth=2373, nans=0, min_depth=-0.3652, max_depth=16.2132 INFO 2025-06-27 07:30:52,500 resample.py correct_biolume_proxies():885 [1] Processing profile=87 for proxy correction: total_points=219 > thresh=3 ? INFO 2025-06-27 07:30:52,502 resample.py correct_biolume_proxies():930 [1] Correcting proxies: valid adinos=114 > thresh=3 -- using fluoBL_corr=-0.2834, total_size_idepth=175, nans=0, min_depth=-0.3524, max_depth=13.3541 INFO 2025-06-27 07:30:52,507 resample.py correct_biolume_proxies():866 [1] Processing profile=88 for proxy correction: found sun event -- set NaN INFO 2025-06-27 07:30:52,549 resample.py resample_variable():1031 [1] Resampling lopc_countListSum with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:52,567 resample.py resample_variable():1031 [1] Resampling lopc_transCount with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:52,583 resample.py resample_variable():1031 [1] Resampling lopc_nonTransCount with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:52,599 resample.py resample_variable():1031 [1] Resampling lopc_LCcount with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:52,616 resample.py resample_variable():1031 [1] Resampling lopc_flowSpeed with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:52,859 resample.py resample_variable():1031 [1] Resampling ecopuck_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:53,137 resample.py resample_variable():1031 [1] Resampling ecopuck_cdom with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:53,416 resample.py resample_variable():1031 [1] Resampling ecopuck_chl with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:53,580 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-27 07:30:54,280 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2022.286.01/dorado_2022.286.01_1S.nc INFO 2025-06-27 07:30:59,356 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-27 07:31:24,635 create_products.py gulper_odv():522 [1] Wrote 20 Gulper data lines to /data/auv_data/dorado/missionodvs/2022.286.01/dorado_2022.286.01_1S_Gulper.txt INFO 2025-06-27 07:31:24,635 process.py archive():337 [1] Archiving steps for 2022.286.01 INFO 2025-06-27 07:31:24,635 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2022.286.01/dorado_2022.286.01, BASE_PATH = /data/auv_data INFO 2025-06-27 07:31:24,637 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2022.286.01/dorado_2022.286.01 files to /Volumes/AUVCTD/surveys/2022/netcdf INFO 2025-06-27 07:31:24,638 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2022/netcdf/dorado_2022.286.01_1S.nc INFO 2025-06-27 07:31:24,734 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2022.286.01/dorado_2022.286.01_1S.nc /Volumes/AUVCTD/surveys/2022/netcdf done. INFO 2025-06-27 07:31:24,735 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2022/netcdf/dorado_2022.286.01_cal.nc INFO 2025-06-27 07:31:25,359 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2022.286.01/dorado_2022.286.01_cal.nc /Volumes/AUVCTD/surveys/2022/netcdf done. INFO 2025-06-27 07:31:25,360 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2022/netcdf/dorado_2022.286.01_align.nc INFO 2025-06-27 07:31:26,297 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2022.286.01/dorado_2022.286.01_align.nc /Volumes/AUVCTD/surveys/2022/netcdf done. INFO 2025-06-27 07:31:26,416 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2022.286.01/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2022/2022286/2022.286.01 done. INFO 2025-06-27 07:31:26,529 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2022.286.01/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2022/2022286/2022.286.01 done. INFO 2025-06-27 07:31:26,545 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2022.286.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2022/2022286/2022.286.01 done. INFO 2025-06-27 07:31:26,640 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2022.286.01/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2022/2022286/2022.286.01 done. INFO 2025-06-27 07:31:27,100 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2022.286.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2022/2022286/2022.286.01 done. INFO 2025-06-27 07:31:27,226 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2022.286.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2022/2022286/2022.286.01 done. INFO 2025-06-27 07:31:27,326 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2022.286.01/FLBBCD2K.nc /Volumes/AUVCTD/missionnetcdfs/2022/2022286/2022.286.01 done. INFO 2025-06-27 07:31:27,407 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2022.286.01/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2022/2022286/2022.286.01 done. INFO 2025-06-27 07:31:27,635 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2022.286.01/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2022/2022286/2022.286.01 done. INFO 2025-06-27 07:31:27,910 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2022.286.01/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2022/2022286/2022.286.01 done. INFO 2025-06-27 07:31:27,910 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-27 07:31:27,912 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2022/odv/dorado_2022.286.01_1S_Gulper.txt INFO 2025-06-27 07:31:27,921 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2022.286.01/dorado_2022.286.01_1S_Gulper.txt /Volumes/AUVCTD/surveys/2022/odv done. INFO 2025-06-27 07:31:27,921 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2022.286.01/dorado_2022.286.01_processing.log /Volumes/AUVCTD/surveys/2022/netcdf