Execution of AUVprocess_main version 1.88 at 2022-10-12T17:47:50Z on elvis
Matlab command executed: 
   AUVprocess_main('AUVCTD', 2022, ['284.00'], 'ssds.shore.mbari.org', 0, 'ssdsLoads-new-ssds.jar', 0, '/mbari/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/', [], 'ctd1')
 
*************************************************************************
Processing data from SSDS via DODS server
*************************************************************************
 
 
*************************************************************************
Processing AUV mission: 2022.284.00
Data path is http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2022/2022284/2022.284.00/
Calibration path is http://ssds.shore.mbari.org/auvctd/missionlogs/2022/2022284/2022.284.00/
Processing results path (data and metadata) is /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/
 
Processing DVL navigation data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2022/2022284/2022.284.00/navigation.nc')
Creating vector time with 373348 elements.
Creating vector mPos_x with 373348 elements.
Creating vector time with 373348 elements.
Creating vector mPos_y with 373348 elements.
Creating vector time with 373348 elements.
Creating vector mDepth with 373348 elements.
Creating vector time with 373348 elements.
Creating vector mGpsNorth with 373348 elements.
Creating vector time with 373348 elements.
Creating vector mGpsEast with 373348 elements.
Creating vector time with 373348 elements.
Creating vector mGpsValid with 373348 elements.
Creating vector time with 373348 elements.
Creating vector mPhi with 373348 elements.
Creating vector time with 373348 elements.
Creating vector mTheta with 373348 elements.
Creating vector time with 373348 elements.
Creating vector mPsi with 373348 elements.
Creating vector time with 373348 elements.
Creating vector mOmega_x with 373348 elements.
Creating vector time with 373348 elements.
Creating vector mOmega_y with 373348 elements.
Creating vector time with 373348 elements.
Creating vector mOmega_z with 373348 elements.
Creating vector time with 373348 elements.
Creating vector mPsaRange with 373348 elements.
Creating vector time with 373348 elements.
Creating vector mAltitude with 373348 elements.
Creating vector time with 373348 elements.
Creating vector multibeamAltitude with 373348 elements.
Creating vector time with 373348 elements.
Creating vector mDvlAltitude with 373348 elements.
Creating vector time with 373348 elements.
Creating vector mEchoAltitude with 373348 elements.
Creating vector time with 373348 elements.
Creating vector mEchoHorizRange with 373348 elements.
Creating vector time with 373348 elements.
Creating vector mEchoAltitudeLast with 373348 elements.
Creating vector time with 373348 elements.
Creating vector mEchoHorizRangeLast with 373348 elements.
Creating vector time with 373348 elements.
Creating vector mEchoNumOfPings with 373348 elements.
Creating vector time with 373348 elements.
Creating vector nadirCnts with 373348 elements.
Creating vector time with 373348 elements.
Creating vector obstacleCnts with 373348 elements.
Creating vector time with 373348 elements.
Creating vector nGoodNadirBeams with 373348 elements.
Creating vector time with 373348 elements.
Creating vector medianNadirBeamNo with 373348 elements.
Creating vector time with 373348 elements.
Creating vector minBeamRange with 373348 elements.
Creating vector time with 373348 elements.
Creating vector minBeamCnts with 373348 elements.
Creating vector time with 373348 elements.
Creating vector thetaB with 373348 elements.
Creating vector time with 373348 elements.
Creating vector lsAlt with 373348 elements.
Creating vector time with 373348 elements.
Creating vector obstacleSlopeAlt with 373348 elements.
Creating vector time with 373348 elements.
Creating vector obstacleSlopeRange with 373348 elements.
Creating vector time with 373348 elements.
Creating vector obstacleAltAll with 373348 elements.
Creating vector time with 373348 elements.
Creating vector obstacleRangeAll with 373348 elements.
Creating vector time with 373348 elements.
Creating vector flightPathAngle with 373348 elements.
Creating vector time with 373348 elements.
Creating vector mWaterSpeed with 373348 elements.
Creating vector time with 373348 elements.
Creating vector mDvlValid with 373348 elements.
Creating vector time with 373348 elements.
Creating vector multibeamValid with 373348 elements.
Creating vector time with 373348 elements.
Creating vector multibeamFailed with 373348 elements.
Creating vector time with 373348 elements.
Creating vector mDvlNewData with 373348 elements.
Creating vector time with 373348 elements.
Creating vector mDeltaT with 373348 elements.
Creating vector time with 373348 elements.
Creating vector nfix with 373348 elements.
Creating vector time with 373348 elements.
Creating vector efix with 373348 elements.
Creating vector time with 373348 elements.
Creating vector filter_north with 373348 elements.
Creating vector time with 373348 elements.
Creating vector filter_east with 373348 elements.
Creating vector time with 373348 elements.
Creating vector filter_depth with 373348 elements.
Creating vector time with 373348 elements.
Creating vector north_current with 373348 elements.
Creating vector time with 373348 elements.
Creating vector east_current with 373348 elements.
Creating vector time with 373348 elements.
Creating vector speed_bias with 373348 elements.
Creating vector time with 373348 elements.
Creating vector heading_bias with 373348 elements.
Creating vector time with 373348 elements.
Creating vector latitudeNav with 373348 elements.
Creating vector time with 373348 elements.
Creating vector longitudeNav with 373348 elements.
Creating vector time with 373348 elements.
Creating vector dNorthingTrn with 373348 elements.
Creating vector time with 373348 elements.
Creating vector dEastingTrn with 373348 elements.
Creating vector time with 373348 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2022/2022284/2022.284.00/navigation.nc');
processNav(): median of positive valued depths = 31.0015
processNav(): Finding depths less than 310.0149 and times > 0
processNav(): length(Nav.depth) = 373348
processNav(): length(gindx)     = 373348
 
Processing GPS navigation data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2022/2022284/2022.284.00/gps.nc')
Creating vector time with 17916 elements.
Creating vector hours with 17916 elements.
Creating vector time with 17916 elements.
Creating vector minutes with 17916 elements.
Creating vector time with 17916 elements.
Creating vector seconds with 17916 elements.
Creating vector time with 17916 elements.
Creating vector centiSeconds with 17916 elements.
Creating vector time with 17916 elements.
Creating vector latitude with 17916 elements.
Creating vector time with 17916 elements.
Creating vector longitude with 17916 elements.
Creating vector time with 17916 elements.
Creating vector quality with 17916 elements.
Creating vector time with 17916 elements.
Creating vector numberOfSatellites with 17916 elements.
Creating vector time with 17916 elements.
Creating vector hdop with 17916 elements.
Creating vector time with 17916 elements.
Creating vector antennaHeight with 17916 elements.
Creating vector time with 17916 elements.
Creating vector geoHeight with 17916 elements.
Creating vector time with 17916 elements.
Creating vector dgpsDataAge with 17916 elements.
Creating vector time with 17916 elements.
Creating vector dgpsRSID with 17916 elements.
Creating vector time with 17916 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2022/2022284/2022.284.00/gps.nc');
 
Processing depth data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2022/2022284/2022.284.00/parosci.nc')
Creating vector time with 743481 elements.
Creating vector depth with 743481 elements.
Creating vector time with 743481 elements.
Creating vector temp with 743481 elements.
Creating vector time with 743481 elements.
Creating vector pressure with 743481 elements.
Creating vector time with 743481 elements.
Creating vector temp_period with 743481 elements.
Creating vector time with 743481 elements.
Creating vector pres_period with 743481 elements.
Creating vector time with 743481 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2022/2022284/2022.284.00/parosci.nc');
in processDepth.m
Before: min(Depth.data) = -0.22629 max(Depth.data) = 203.3681
Found 0 bad (> 300 | < -1.0) depth values in Depth.data.  Replacing with NaNs
After: min(Depth.data) = -0.22629 max(Depth.data) = 203.3681
 
Processing hs2 backscattering and chlorophyll fluorescence data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2022/2022284/2022.284.00/hydroscatlog.nc')
Creating vector time with 298691 elements.
Creating vector Seconds with 298691 elements.
Creating vector time with 298691 elements.
Creating vector HundrethsOfSeconds with 298691 elements.
Creating vector time with 298691 elements.
Creating vector Snorm1 with 298691 elements.
Creating vector time with 298691 elements.
Creating vector Snorm2 with 298691 elements.
Creating vector time with 298691 elements.
Creating vector Snorm3 with 298691 elements.
Creating vector time with 298691 elements.
Creating vector Gain_Status_1 with 298691 elements.
Creating vector time with 298691 elements.
Creating vector Gain_Status_2 with 298691 elements.
Creating vector time with 298691 elements.
Creating vector Gain_Status_3 with 298691 elements.
Creating vector time with 298691 elements.
Creating vector RawDepthValue with 298691 elements.
Creating vector time with 298691 elements.
Creating vector RawTempValue with 298691 elements.
Creating vector time with 298691 elements.
Creating vector Temperature with 298691 elements.
Creating vector time with 298691 elements.
Creating vector ErrorValue with 298691 elements.
Creating vector time with 298691 elements.
Creating vector bb470 with 298691 elements.
Creating vector time with 298691 elements.
Creating vector bb676 with 298691 elements.
Creating vector time with 298691 elements.
Creating vector fl676u with 298691 elements.
Creating vector time with 298691 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2022/2022284/2022.284.00/hydroscatlog.nc');
 
Processing CTD #1 data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2022/2022284/2022.284.00/ctdDriver.nc')
Creating vector time with 298767 elements.
Creating vector conductivity with 298767 elements.
Creating vector time with 298767 elements.
Creating vector temperature with 298767 elements.
Creating vector time with 298767 elements.
Creating vector cond_frequency with 298767 elements.
Creating vector time with 298767 elements.
Creating vector temp_frequency with 298767 elements.
Creating vector time with 298767 elements.
Creating vector spare with 298767 elements.
Creating vector time with 298767 elements.
Creating vector humidity with 298767 elements.
Creating vector time with 298767 elements.
Creating vector flow1 with 298767 elements.
Creating vector time with 298767 elements.
Creating vector CDOM with 298767 elements.
Creating vector time with 298767 elements.
Creating vector dissolvedO2 with 298767 elements.
Creating vector time with 298767 elements.
Creating vector salinity with 298767 elements.
Creating vector time with 298767 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2022/2022284/2022.284.00/ctdDriver.nc');
Obtaining calibration from http://ssds.shore.mbari.org/auvctd/missionlogs/2022/2022284/2022.284.00/ctdDriver.cfg
Oxygen calibration loaded from CTD config file (current method)
Using constant flow rate offset for oxygen...
 
Processing CTD #2 data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2022/2022284/2022.284.00/ctdDriver2.nc')
Creating vector time with 298644 elements.
Creating vector conductivity with 298644 elements.
Creating vector time with 298644 elements.
Creating vector temperature with 298644 elements.
Creating vector time with 298644 elements.
Creating vector cond_frequency with 298644 elements.
Creating vector time with 298644 elements.
Creating vector temp_frequency with 298644 elements.
Creating vector time with 298644 elements.
Creating vector flow2 with 298644 elements.
Creating vector time with 298644 elements.
Creating vector par with 298644 elements.
Creating vector time with 298644 elements.
Creating vector spare with 298644 elements.
Creating vector time with 298644 elements.
Creating vector salinity with 298644 elements.
Creating vector time with 298644 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2022/2022284/2022.284.00/ctdDriver2.nc');
Obtaining calibration from http://ssds.shore.mbari.org/auvctd/missionlogs/2022/2022284/2022.284.00/ctdDriver2.cfg
 
Processing ISUS data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2022/2022284/2022.284.00/isuslog.nc')
Error: Error while reading the URL: http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2022/2022284/2022.284.00/isuslog.nc.dods?.
The OPeNDAP server returned the following message:
Not Found: The data source or server could not be found.
        Often this means that the OPeNDAP server is missing or needs attention;
        Please contact the server administrator.


att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2022/2022284/2022.284.00/isuslog.nc');
Error: Error while reading the URL: http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2022/2022284/2022.284.00/isuslog.nc.das.
The OPeNDAP server returned the following message:
Not Found: The data source or server could not be found.
        Often this means that the OPeNDAP server is missing or needs attention;
        Please contact the server administrator.


*** Setting ISUS structure to NaN values.
 
Processing Biolume data...
[Warning: "/mbari/matlab/toolbox/matlab/demos" not found in path.] 
[> In rmpath (line 71)
  In processBiolume (line 21)
  In processAUVmission (line 220)
  In AUVprocess_main (line 227)] 
[Warning: "/mbari/matlabR2012a/toolbox/matlab/demos" not found in path.] 
[> In rmpath (line 71)
  In processBiolume (line 22)
  In processAUVmission (line 220)
  In AUVprocess_main (line 227)] 
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2022/2022284/2022.284.00/biolume.nc')
Creating vector time with 73463 elements.
Creating vector rrr with 73463 elements.
Creating vector time with 73463 elements.
Creating vector cal_striing with 73463 elements.
Creating vector time with 73463 elements.
Creating vector avg_biolume with 73463 elements.
Creating vector time with 73463 elements.
Creating vector pump with 73463 elements.
Creating vector time with 73463 elements.
Creating vector system_voltage with 73463 elements.
Creating vector time with 73463 elements.
Creating vector flow with 73463 elements.
Creating vector time with 73463 elements.
Creating vector HV with 73463 elements.
Creating vector time with 73463 elements.
Creating vector reserved with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_0 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_1 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_2 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_3 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_4 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_5 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_6 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_7 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_8 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_9 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_10 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_11 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_12 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_13 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_14 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_15 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_16 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_17 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_18 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_19 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_20 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_21 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_22 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_23 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_24 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_25 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_26 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_27 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_28 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_29 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_30 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_31 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_32 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_33 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_34 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_35 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_36 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_37 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_38 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_39 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_40 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_41 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_42 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_43 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_44 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_45 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_46 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_47 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_48 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_49 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_50 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_51 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_52 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_53 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_54 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_55 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_56 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_57 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_58 with 73463 elements.
Creating vector time with 73463 elements.
Creating vector raw_59 with 73463 elements.
Creating vector time with 73463 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2022/2022284/2022.284.00/biolume.nc');
 
Processing LOPC plankton data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2022/2022284/2022.284.00/lopc.nc')
Creating vector bin with 994 elements.
Creating matrix sepCountList (7115 x 994) with 7072310 elements.
Creating vector time with 7115 elements.
Creating vector bin with 994 elements.
Creating matrix mepCountList (7115 x 994) with 7072310 elements.
Creating vector time with 7115 elements.
Creating vector bin with 994 elements.
Creating matrix countList (7115 x 994) with 7072310 elements.
Creating vector time with 7115 elements.
Creating vector bin with 994 elements.
Creating vector LCcount with 7115 elements.
Creating vector time with 7115 elements.
Creating vector transCount with 7115 elements.
Creating vector time with 7115 elements.
Creating vector nonTransCount with 7115 elements.
Creating vector time with 7115 elements.
Creating vector ai_mean with 7115 elements.
Creating vector time with 7115 elements.
Creating vector ai_min with 7115 elements.
Creating vector time with 7115 elements.
Creating vector ai_max with 7115 elements.
Creating vector time with 7115 elements.
Creating vector ai_std with 7115 elements.
Creating vector time with 7115 elements.
Creating vector esd_mean with 7115 elements.
Creating vector time with 7115 elements.
Creating vector esd_min with 7115 elements.
Creating vector time with 7115 elements.
Creating vector esd_max with 7115 elements.
Creating vector time with 7115 elements.
Creating vector esd_std with 7115 elements.
Creating vector time with 7115 elements.
Creating vector countSum with 7115 elements.
Creating vector time with 7115 elements.
Creating vector snapshot with 7115 elements.
Creating vector time with 7115 elements.
Creating vector threshold with 7115 elements.
Creating vector time with 7115 elements.
Creating vector sampleCount with 7115 elements.
Creating vector time with 7115 elements.
Creating vector flowCount with 7115 elements.
Creating vector time with 7115 elements.
Creating vector flowTime with 7115 elements.
Creating vector time with 7115 elements.
Creating vector bufferStatus with 7115 elements.
Creating vector time with 7115 elements.
Creating vector laserLevel with 7115 elements.
Creating vector time with 7115 elements.
Creating vector counter with 7115 elements.
Creating vector time with 7115 elements.
Creating vector counterPeriod with 7115 elements.
Creating vector time with 7115 elements.
Creating vector laserControl with 7115 elements.
Creating vector time with 7115 elements.
Creating vector countUnknownFrameCharacter with 7115 elements.
Creating vector time with 7115 elements.
Creating vector countBeginLFrameWithoutEndOfPreviousFrame with 7115 elements.
Creating vector time with 7115 elements.
Creating vector countBeginMFrameWithoutEndOfPreviousFrame with 7115 elements.
Creating vector time with 7115 elements.
Creating vector flowSpeed with 7115 elements.
Creating vector time with 7115 elements.
Creating vector countShortLFrameError with 7115 elements.
Creating vector time with 7115 elements.
Creating vector countGarbledLFrame with 7115 elements.
Creating vector time with 7115 elements.
Creating vector cFrameEsecs with 7115 elements.
Creating vector time with 7115 elements.
Creating vector correctedSampleCountList with 7115 elements.
Creating vector time with 7115 elements.
Creating vector time with 7115 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2022/2022284/2022.284.00/lopc.nc');
 
save /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/Dorado389_2022.284.00.mat BL CTD1 CTD2 hs2 ISUS Nav gps lopc
*************************************************************************
 
 
*************************************************************************
Calling build_auv_survey.m to construct survey file...
Reading: /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/Dorado389_2022.284.00.mat
Calling matchDVLtoGPS to adjust dvl data in the underwater segments...
setting up UTM transformation using M_Map calls...
Looping over 37 segments.
[Warning: MATLAB has disabled some advanced graphics rendering features by
switching to software OpenGL. For more information, click <a
href="matlab:opengl('problems')">here</a>.] 
Current plot held
Printing navigation adjust plot to /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/Dorado389_2022_284_00_284_00_nav_adjust.png
Saving survey data to /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/Dorado389_2022_284_00_284_00.mat
Done saving to /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/Dorado389_2022_284_00_284_00.mat
 
 
*************************************************************************
Calling plot_sections from ../viz to produce section plots ...
Using median boxcar filter of vector...
Using mean boxcar filter of vector...
Number of profiles found = 410 Gridding with nix = 1230, iZ = 404
Using mean boxcar filter of vector...
Using mean boxcar filter of vector...
Using max boxcar filter of vector...
Using max boxcar filter of vector...
Using max boxcar filter of vector...
Gridding...
   T
   S
   O
Using median boxcar filter of vector...
Using median boxcar filter of vector...
Using median boxcar filter of vector...
   bbp420
   bbp700
   fl700_uncorr
   N
Only one good point - NaNing the gN array.
   BL
   BLflow
   LOPC
     count
     transCount
     nonTransCount
     LCcount
 
Masking and filtering with median filter of size 5...
  cvarname = gT
  cvarname = gS
  cvarname = gO
  cvarname = gN
No valid data for gN
  cvarname = gF
  cvarname = gB420
  cvarname = gB700
  cvarname = gBL
  cvarname = gBLflow
  cvarname = gLOPCcount
  cvarname = gLOPCtransCount
  cvarname = gLOPCnonTransCount
  cvarname = gLOPCLCcount
Encountered 0 NaN values in array of lon that is 350646 elements long
! gmt grdtrack -V ~/tmp/grdTrk.txt -GMonterey25.grd -bos >! ~/tmp/grdTrk.bath
grdtrack: Warning: -b option with type s, S, or D are deprecated; Use <n>f or <n>d, with w to indicate swab
grdtrack: Processing input grid(s)
grdtrack: Output 1 columns via binary records using format f
grdtrack: Sampled 350646 points from grid Monterey25.grd (2876 x 2447)
Getting short wave radiation data from M1 for little plot above the biolume section plot
Creating vector TIME with 157186 elements.

ds = 

  cfdataset with properties:

       netcdf: [1x1 ucar.nc2.dataset.NetcdfDataset]
    variables: {18x1 cell}

SWR data read from OPeNDAP has time range: 10/11/2022 10:29  to 10/12/2022 08:30 

swr =

  159.9736
  277.3753
  286.9417
  278.0106
  210.0857
  176.3650
  106.0492
   46.3769
    9.2689
    3.3550
    3.4671
    3.4667
    3.3663
    3.2667
    3.2000
    3.0891
    3.0992
    3.0667
    3.0783
    2.9659
    2.8562
    9.0697
       NaN

Contouringf SWR to file: /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/Dorado389_2022_284_00_284_00_swr.png
Done plotting SWR.
Executing: /bin/rm -f ../results/2022284_GulperTimes.txt && touch ../results/2022284_GulperTimes.txt
Getting mission start epoch seconds from: http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2022/2022284/2022.284.00/navigation.nc.ascii?time[0:1:0]
Executing: perl parseGulper.pl -syslogFile /mbari/AUVCTD/missionlogs/2022/2022284/2022.284.00/syslog -startEsecs 1665515471.4359 -surveyName Dorado389_2022_284_00_284_00 >> ../results/2022284_GulperTimes.txt
Executing: removeGulpDups.py ../results/2022284_GulperTimes.txt
Bottle: 0 Time: 1665518289.8628 Depth: 149.9577 Dist: 2.3248
Bottle: 1 Time: 1665518452.8617 Depth: 99.9424 Dist: 2.4987
Bottle: 2 Time: 1665518591.6621 Depth: 59.9702 Dist: 2.6429
Bottle: 3 Time: 1665518733.8624 Depth: 19.9915 Dist: 2.7971
Bottle: 4 Time: 1665518805.8575 Depth: 4.9716 Dist: 2.8707
Bottle: 5 Time: 1665522777.8654 Depth: 5.0756 Dist: 7.1432
Bottle: 6 Time: 1665526623.6619 Depth: 0.020289 Dist: 11.3577
Bottle: 7 Time: 1665530341.4572 Depth: 5.0041 Dist: 15.5958
Bottle: 8 Time: 1665533814.0593 Depth: 5.0555 Dist: 19.5356
Bottle: 9 Time: 1665537706.2627 Depth: 5.0402 Dist: 24.0741
Bottle: 10 Time: 1665541244.4603 Depth: 5.0608 Dist: 28.1875
Bottle: 11 Time: 1665544669.2657 Depth: 5.017 Dist: 32.2292
Bottle: 12 Time: 1665548123.4591 Depth: 5.0247 Dist: 36.2413
Bottle: 13 Time: 1665553566.0562 Depth: 5.0458 Dist: 42.2858
Bottle: 14 Time: 1665557212.2565 Depth: 5.0671 Dist: 46.796
Bottle: 15 Time: 1665560794.861 Depth: 5.0913 Dist: 51.2244
Bottle: 16 Time: 1665564284.262 Depth: 5.0448 Dist: 55.3283
Bottle: 17 Time: 1665567409.4579 Depth: 5.0767 Dist: 58.9143
Bottle: 18 Time: 1665570783.4568 Depth: 5.0054 Dist: 62.8672
Bottle: 19 Time: 1665574276.4575 Depth: 5.0773 Dist: 66.9864
Saving gridded, filtered data to /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/Dorado389_2022_284_00_284_00_gridded.mat

outvarstr =

    'gF gT gN gS gD gO gB420 gB700 gBL gBLflow gLOPCcount gLOPCtransCount gLOPCnonTransCount gLOPCLCcount idist iZ auvnav distnav ilat ilon profDist profZ dists depths stride sdists sdepths fixLonSubIntrp fixLatSubIntrp GulperLocations bmask bdist bdepth fbdist fbdepth '

2Column contouring gridded variable gD
  Drawing bottom contour from EM300 data
2Column contouring gridded variable gT
  Drawing bottom contour from EM300 data
2Column contouring gridded variable gS
  Drawing bottom contour from EM300 data
2Column contouring gridded variable gN
  Drawing bottom contour from EM300 data
2Column contouring gridded variable gO
  Drawing bottom contour from EM300 data
2Column contouring gridded variable gB420
  Drawing bottom contour from EM300 data
2Column contouring gridded variable gB700
  Drawing bottom contour from EM300 data
2Column contouring gridded variable gF
  Drawing bottom contour from EM300 data
2Column contouring gridded variable gBL
  Drawing bottom contour from EM300 data
Printing two column section summary to /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/Dorado389_2022_284_00_284_00_2column.png
Elapsed time to save image: 10 seconds
Biolume contouring gridded variable gD
  Drawing bottom contour from EM300 data
Biolume contouring gridded variable gT
  Drawing bottom contour from EM300 data
Biolume contouring gridded variable gS
  Drawing bottom contour from EM300 data
Biolume contouring gridded variable gN
  Drawing bottom contour from EM300 data
Biolume contouring gridded variable gO
  Drawing bottom contour from EM300 data
Biolume contouring gridded variable gB420
  Drawing bottom contour from EM300 data
Biolume contouring gridded variable gB700
  Drawing bottom contour from EM300 data
Biolume contouring gridded variable gF
  Drawing bottom contour from EM300 data
Biolume contouring gridded variable gBL
  Drawing bottom contour from EM300 data
Printing biolume section summary to /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/Dorado389_2022_284_00_284_00_biolume.png
Elapsed time to save image: 51 seconds
2Column contouring gridded variable gLOPCcount
  Drawing bottom contour from EM300 data
2Column contouring gridded variable gLOPCtransCount
  Drawing bottom contour from EM300 data
2Column contouring gridded variable gLOPCnonTransCount
  Drawing bottom contour from EM300 data
2Column contouring gridded variable gLOPCLCcount
  Drawing bottom contour from EM300 data
2Column contouring gridded variable gT
  Drawing bottom contour from EM300 data
2Column contouring gridded variable gB420
  Drawing bottom contour from EM300 data
2Column contouring gridded variable gB700
  Drawing bottom contour from EM300 data
2Column contouring gridded variable gF
  Drawing bottom contour from EM300 data
2Column contouring gridded variable gBL
  Drawing bottom contour from EM300 data
Printing two column section summary to /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/Dorado389_2022_284_00_284_00_lopc.png
Elapsed time to save image: 12 seconds
 
 
*************************************************************************
Calling plot_survey_stats to produce histogram and profile statistics plots...
Printing section summary to /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/Dorado389_2022_284_00_284_00_hist_stats.png
Printing section summary to /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/Dorado389_2022_284_00_284_00_prof_stats.png
Copying /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/Dorado389_2022_284_00_284_00_2column.png...
Copied to /mbari/AUVCTD/surveys/2022/images/.  Removing from /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/
Copying /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/Dorado389_2022_284_00_284_00_biolume.png...
Copied to /mbari/AUVCTD/surveys/2022/images/.  Removing from /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/
Copying /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/Dorado389_2022_284_00_284_00_lopc.png...
Copied to /mbari/AUVCTD/surveys/2022/images/.  Removing from /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/
Copying /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/Dorado389_2022_284_00_284_00_nav_adjust.png...
Copied to /mbari/AUVCTD/surveys/2022/images/.  Removing from /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/
Copying /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/Dorado389_2022_284_00_284_00_hist_stats.png...
Copied to /mbari/AUVCTD/surveys/2022/images/.  Removing from /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/
Copying /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/Dorado389_2022_284_00_284_00_prof_stats.png...
Copied to /mbari/AUVCTD/surveys/2022/images/.  Removing from /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/
 
 
*************************************************************************
Writing decimated netCDF file ...
Iterpolating to 2 second increments between Nav time bounds...
gmtstr(tstart) = 2022-10-11T19:11:11Z
gmtstr(tend) = 2022-10-12T15:55:40Z
Interpolating ctd1 temperature...
Interpolating ctd1 salinity...
1 NaNs found in bbpBlue.  Interpolating anyway.
27 NaNs found in bbpRed.  Interpolating anyway.
Saving Global Attributes
Saving Variables and attributes
Copying /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/Dorado389_2022_284_00_284_00_decim.nc...
Copied to /mbari/AUVCTD/surveys/2022/netcdf/.  Removing from /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/
 
 
*************************************************************************
Writing KML files ...
KML = write_kml(survey_shrt_filename_base, 'Temperature', jetplus, varlimits(1,:), ctd1.T, time.ctd1, auvnav, depth.ctd1, resultspath);
updating: u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results//Dorado389_2022_284_00_284_00_Temperature.kml (deflated 93%)
Copying /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results//Dorado389_2022_284_00_284_00_Temperature.kmz...
Copied to /mbari/AUVCTD/surveys/2022/kml/.  Removing from /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/
 
KML = write_kml(survey_shrt_filename_base, 'Salinity', jetplus, varlimits(2,:), ctd1.S, time.ctd1, auvnav, depth.ctd1, resultspath);
updating: u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results//Dorado389_2022_284_00_284_00_Salinity.kml (deflated 93%)
Copying /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results//Dorado389_2022_284_00_284_00_Salinity.kmz...
Copied to /mbari/AUVCTD/surveys/2022/kml/.  Removing from /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/
 
KML = write_kml(survey_shrt_filename_base, 'Nitrate', jetplus, varlimits(3,:), isus.nitrate, time.isus, auvnav, depth.isus, resultspath);
length(v_esecs(gindx)) =   which is less than 2.  Not processing.
updating: u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results//Dorado389_2022_284_00_284_00_Nitrate.kml (deflated 94%)
Copying /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results//Dorado389_2022_284_00_284_00_Nitrate.kmz...
Copied to /mbari/AUVCTD/surveys/2022/kml/.  Removing from /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/
 
KML = write_kml(survey_shrt_filename_base, 'Oxygen', jetplus, varlimits(4,:), ctd1.O2, time.ctd1, auvnav, depth.ctd1, resultspath);
updating: u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results//Dorado389_2022_284_00_284_00_Oxygen.kml (deflated 93%)
Copying /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results//Dorado389_2022_284_00_284_00_Oxygen.kmz...
Copied to /mbari/AUVCTD/surveys/2022/kml/.  Removing from /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/
 
KML = write_kml(survey_shrt_filename_base, 'Optical Backscatter @420 nm', jetplus, varlimits(5,:), hs2.bbp420, time.hs2, auvnav, depth.hs2, resultspath);
updating: u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results//Dorado389_2022_284_00_284_00_Optical_Backscatter_420_nm.kml (deflated 93%)
Copying /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results//Dorado389_2022_284_00_284_00_Optical_Backscatter_420_nm.kmz...
Copied to /mbari/AUVCTD/surveys/2022/kml/.  Removing from /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/
 
KML = write_kml(survey_shrt_filename_base, 'Optical Backscatter @700 nm', jetplus, varlimits(6,:), hs2.bbp700, time.hs2, auvnav, depth.hs2, resultspath);
updating: u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results//Dorado389_2022_284_00_284_00_Optical_Backscatter_700_nm.kml (deflated 93%)
Copying /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results//Dorado389_2022_284_00_284_00_Optical_Backscatter_700_nm.kmz...
Copied to /mbari/AUVCTD/surveys/2022/kml/.  Removing from /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/
 
KML = write_kml(survey_shrt_filename_base, 'Chlorophyll Fluorescence', jetplus, varlimits(7,:), hs2.fl700_uncorr, time.hs2, auvnav, depth.hs2, resultspath);
updating: u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results//Dorado389_2022_284_00_284_00_Chlorophyll_Fluorescence.kml (deflated 93%)
Copying /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results//Dorado389_2022_284_00_284_00_Chlorophyll_Fluorescence.kmz...
Copied to /mbari/AUVCTD/surveys/2022/kml/.  Removing from /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/
 
KML = write_kml(survey_shrt_filename_base, 'Bioluminescence', jetplus, varlimits(8,:), biolume.biolume, time.biolume, auvnav, depth.biolume, resultspath);
updating: u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results//Dorado389_2022_284_00_284_00_Bioluminescence.kml (deflated 93%)
Copying /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results//Dorado389_2022_284_00_284_00_Bioluminescence.kmz...
Copied to /mbari/AUVCTD/surveys/2022/kml/.  Removing from /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/
 
KML = write_kml(survey_shrt_filename_base, 'LOPC Total Count', jetplus, varlimits(9,:), lopc.countSum, time.lopc, auvnav, depth.lopc, resultspath);
updating: u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results//Dorado389_2022_284_00_284_00_LOPC_Total_Count.kml (deflated 93%)
Copying /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results//Dorado389_2022_284_00_284_00_LOPC_Total_Count.kmz...
Copied to /mbari/AUVCTD/surveys/2022/kml/.  Removing from /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/
 
Creating Dorado389_2022_284_00_284_00.kml file to hold all the variable .kmz files...
Copying /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/Dorado389_2022_284_00_284_00.kml...
Copied to /mbari/AUVCTD/surveys/2022/kml/.  Removing from /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/
[Warning: File
'/u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results//Dorado389_2022_284_00_284_00_LOPC_Total_Count.kml'
not found.] 
[> In create_data_products (line 445)
  In build_auv_survey (line 530)
  In AUVprocess_main (line 257)] 
 
 
*************************************************************************
Writing ODV file ...
Loading survey file /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/Dorado389_2022_284_00_284_00.mat ...
Iterpolating to 2 second increments between Nav time bounds...
gmtstr(tstart) = 2022-10-11T19:11:11Z
gmtstr(tend) = 2022-10-12T15:55:40Z
Interpolating ctd1 temperature...
Interpolating ctd1 salinity...
1 NaNs found in bbpBlue.  Interpolating anyway.
27 NaNs found in bbpRed.  Interpolating anyway.
Encountered 2271 NaN values in array of lon that is 37335 elements long
! gmt grdtrack -V ~/tmp/grdTrk.txt -GMonterey25.grd -bos >! ~/tmp/grdTrk.bath
grdtrack: Warning: -b option with type s, S, or D are deprecated; Use <n>f or <n>d, with w to indicate swab
grdtrack: Processing input grid(s)
grdtrack: Output 1 columns via binary records using format f
grdtrack: Sampled 35064 points from grid Monterey25.grd (2876 x 2447)
Number of depths returned from grdtrack = 35064 are not equal to number of Lat lon points = 37335
AUV track probably goes outside of the range of the .grd file being used.   Setting bottom depths to 1000 m
Writing to /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/Dorado389_2022_284_00_284_00.txt
Writing to /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/Dorado389_2022_284_00_284_00_Gulper.txt
Copying /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/Dorado389_2022_284_00_284_00.txt...
Copied to /mbari/AUVCTD/surveys/2022/odv/.  Removing from /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/
Copying /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/Dorado389_2022_284_00_284_00_Gulper.txt...
Copied to /mbari/AUVCTD/surveys/2022/odv/.  Removing from /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/
 
 
*************************************************************************
Writing netCDF file ...
Saving Global Attributes
Saving Variables and attributes
Copying /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/Dorado389_2022_284_00_284_00.nc...
Copied to /mbari/AUVCTD/surveys/2022/netcdf/.  Removing from /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/
Copying /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/Dorado389_2022_284_00_284_00_gridded.mat...
Copied to /mbari/AUVCTD/surveys/2022/mat/.  Removing from /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/
 
 
*************************************************************************
Copying /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/Dorado389_2022_284_00_284_00.mat...
Copied to /mbari/AUVCTD/surveys/2022/mat/.  Removing from /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/
permalink_url.sh http://dods.mbari.org/cgi-bin/nph-nc/data/auvctd/surveys/2022/netcdf/Dorado389_2022_284_00_284_00.nc
 
 
*************************************************************************
Composing email to send to auvctd@listserver.mbari.org ...
!mail -s "Survey Dorado389_2022_284_00_284_00 processed" auvctd@listserver.mbari.org < mail_Dorado389_2022_284_00_284_00.txt
Removing mission .mat files:
   /u/ssdsadmin/dev/auv_ctd.cvs/src/matlab/doradosdp/results/Dorado389_2022.284.00.mat
Processing time: 305 seconds