INFO 2025-10-21 17:13:54,444 process.py process_mission():429 [1] commandline = /src/data/process_i2map.py -v --noinput --start_year 2021 --end_year 2021 --start_yd 1 --end_yd 365 --num_cores 1 --clobber INFO 2025-10-21 17:13:54,444 process.py process_mission():449 [1] Processing i2map mission 2021.340.00 by user docker_user on host 5757469a1a5e INFO 2025-10-21 17:13:54,444 process.py download_process():165 [1] Download and processing steps for 2021.340.00 INFO 2025-10-21 17:13:54,445 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/M3/master/i2MAP/2021/12/20211206/2021.340.00 INFO 2025-10-21 17:13:54,445 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/M3/master/i2MAP/2021/12/20211206/2021.340.00 to /data/auv_data/i2map/missionlogs/2021.340.00 INFO 2025-10-21 17:13:56,458 logs2netcdfs.py download_process_logs():779 [1] Processing mission: i2map 2021.340.00 INFO 2025-10-21 17:13:56,459 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.340.00/gps.log (1090868 bytes) INFO 2025-10-21 17:13:56,676 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.340.00/navigation.log (142866124 bytes) INFO 2025-10-21 17:14:08,211 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.340.00/parosci.log (40156598 bytes) INFO 2025-10-21 17:14:11,735 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.340.00/tailCone.log (20176555 bytes) INFO 2025-10-21 17:14:14,181 logs2netcdfs.py download_process_logs():807 [1] Time to process: 17.72 seconds INFO 2025-10-21 17:14:14,182 process.py calibrate():227 [1] Calibration steps for 2021.340.00 INFO 2025-10-21 17:14:14,723 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-10-21 17:14:14,726 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-10-21 17:14:15,850 calibrate.py _nudge_pos():1806 [1] 132: 0.190 0.0020226 -0.0026469 31777 105.92 2.837 -4.631 2021-12-06T18:54:31.118596608 INFO 2025-10-21 17:14:16,444 calibrate.py _nudge_pos():1806 [1] 186: 0.190 0.0004584 -0.0006142 1840 6.13 11.109 -18.567 2021-12-06T19:01:32.119756032 INFO 2025-10-21 17:14:17,037 calibrate.py _nudge_pos():1806 [1] 239: 0.140 0.0039091 0.0016331 36827 122.75 4.731 2.465 2021-12-06T21:05:09.711616000 INFO 2025-10-21 17:14:17,785 calibrate.py _nudge_pos():1806 [1] 305: 0.200 0.0002485 -0.0003695 2489 8.29 4.452 -8.256 2021-12-06T21:14:32.713047808 INFO 2025-10-21 17:14:18,658 calibrate.py _nudge_pos():1806 [1] 383: 0.020 0.0001928 -0.0000372 1981 6.60 4.339 -1.046 2021-12-06T21:22:25.910631680 INFO 2025-10-21 17:14:20,032 calibrate.py _nudge_pos():1806 [1] 505: 0.060 0.0001471 -0.0000857 2075 6.91 3.161 -2.298 2021-12-06T21:31:21.913912832 INFO 2025-10-21 17:14:20,381 calibrate.py _nudge_pos():1806 [1] 536: 0.130 0.0039108 0.0008318 32682 108.94 5.334 1.415 2021-12-06T23:20:48.314083584 INFO 2025-10-21 17:14:20,553 calibrate.py _nudge_pos():1806 [1] 551: 0.170 0.0002555 -0.0005556 2510 8.36 4.539 -12.311 2021-12-06T23:29:24.318734848 INFO 2025-10-21 17:14:20,872 calibrate.py _nudge_pos():1806 [1] 579: 0.150 0.0032748 0.0027531 36763 122.54 3.970 4.163 2021-12-07T01:32:23.913198080 INFO 2025-10-21 17:14:22,295 calibrate.py _nudge_pos():1806 [1] 701: 0.160 0.0003832 -0.0007017 2685 8.95 6.364 -14.532 2021-12-07T01:43:21.918121472 INFO 2025-10-21 17:14:22,820 calibrate.py _nudge_pos():1806 [1] 746: 0.160 -0.0000003 -0.0000114 20 0.06 -0.786 -33.376 2021-12-07T01:44:09.914833664 INFO 2025-10-21 17:14:22,866 calibrate.py _nudge_pos():1806 [1] 750: 0.190 0.0004382 -0.0004105 1860 6.20 10.507 -12.275 2021-12-07T01:50:25.919075584 INFO 2025-10-21 17:14:25,500 calibrate.py _nudge_pos():1806 [1] 971: 0.060 0.0000586 -0.0008396 2475 8.25 1.057 -18.864 2021-12-07T02:02:21.120080896 INFO 2025-10-21 17:14:25,828 calibrate.py _nudge_pos():1806 [1] 999: 0.040 0.0000663 -0.0000291 90 0.30 33.221 -18.169 2021-12-07T02:03:06.116998400 INFO 2025-10-21 17:14:25,981 calibrate.py _nudge_pos():1806 [1] 1012: 0.120 0.0036629 0.0017360 17846 59.48 9.149 5.408 2021-12-07T03:02:47.311669760 INFO 2025-10-21 17:14:26,470 calibrate.py _nudge_pos():1806 [1] 1054: 0.130 0.0035301 -0.0031642 14341 47.80 10.973 -12.266 2021-12-07T03:51:16.512375808 INFO 2025-10-21 17:14:27,235 calibrate.py _nudge_pos():1806 [1] 1119: 0.120 -0.0001220 -0.0000971 295 0.98 -18.500 -18.358 2021-12-07T03:53:19.513949696 INFO 2025-10-21 17:14:27,411 calibrate.py _nudge_pos():1806 [1] 1134: 0.180 0.0009354 -0.0012456 3395 11.31 12.285 -20.402 2021-12-07T04:04:52.516475648 INFO 2025-10-21 17:14:27,541 calibrate.py _nudge_pos():1806 [1] 1145: 0.190 -0.0002155 -0.0002917 490 1.63 -19.642 -33.155 2021-12-07T04:06:41.519008512 INFO 2025-10-21 17:14:28,190 calibrate.py _nudge_pos():1806 [1] 1200: 0.050 0.0005232 -0.0006755 2391 7.97 9.757 -15.713 2021-12-07T04:15:33.712550912 INFO 2025-10-21 17:14:28,657 calibrate.py _nudge_pos():1806 [1] 1240: 0.190 0.0000178 -0.0000187 25 0.08 33.078 -43.206 2021-12-07T04:16:17.519549952 INFO 2025-10-21 17:14:29,094 calibrate.py _nudge_pos():1806 [1] 1277: 0.050 0.0000583 -0.0003663 1085 3.61 2.397 -18.785 2021-12-07T04:20:30.712205056 INFO 2025-10-21 17:14:29,942 calibrate.py _nudge_pos():1806 [1] 1350: 0.070 -0.0000457 -0.0005706 1770 5.90 -1.151 -17.930 2021-12-07T04:27:36.713021952 INFO 2025-10-21 17:14:30,398 calibrate.py _nudge_pos():1806 [1] 1389: 0.100 0.0001783 -0.0005158 1514 5.04 5.253 -18.950 2021-12-07T04:33:17.719661568 INFO 2025-10-21 17:15:01,053 calibrate.py _nudge_pos():1806 [1] 3942: 0.180 0.0028210 -0.0023171 5350 17.83 23.508 -24.080 2021-12-07T05:33:39.911524352 INFO 2025-10-21 17:15:01,891 calibrate.py _nudge_pos():1806 [1] 4012: 0.010 0.0007708 -0.0005945 2726 9.08 12.607 -12.128 2021-12-07T05:43:54.119448064 INFO 2025-10-21 17:15:02,105 calibrate.py _nudge_pos():1806 [1] 4030: 0.070 0.0028850 -0.0034291 31983 106.61 4.021 -5.960 2021-12-07T07:30:47.520100096 INFO 2025-10-21 17:15:02,369 calibrate.py _nudge_pos():1806 [1] 4052: 0.110 0.0005663 -0.0007502 2410 8.03 10.479 -17.312 2021-12-07T07:39:10.515642368 INFO 2025-10-21 17:15:04,068 calibrate.py _nudge_pos():1806 [1] 4192: 0.080 0.0015306 0.0004369 37392 124.64 1.825 0.650 2021-12-07T09:46:08.113801216 INFO 2025-10-21 17:15:05,370 calibrate.py _nudge_pos():1806 [1] 4298: 0.120 0.0001044 -0.0004415 3115 10.38 1.495 -7.881 2021-12-07T09:58:16.113929984 INFO 2025-10-21 17:15:05,782 calibrate.py _nudge_pos():1806 [1] 4332: 0.150 0.0000418 0.0000143 1985 6.61 0.938 0.399 2021-12-07T10:05:26.114472960 INFO 2025-10-21 17:15:07,010 calibrate.py _nudge_pos():1806 [1] 4433: 0.180 -0.0002665 -0.0001736 2070 6.90 -5.742 -4.665 2021-12-07T10:14:00.119260928 INFO 2025-10-21 17:15:08,077 calibrate.py _nudge_pos():1806 [1] 4521: 0.080 0.0029173 0.0021638 32778 109.26 3.967 3.670 2021-12-07T12:04:42.714212096 INFO 2025-10-21 17:15:12,966 calibrate.py _nudge_pos():1806 [1] 4920: 0.030 0.0024003 0.0001068 9591 31.97 11.156 0.619 2021-12-07T12:43:18.915541504 INFO 2025-10-21 17:15:13,228 calibrate.py _nudge_pos():1806 [1] 4941: 0.180 0.0023595 0.0002765 9040 30.13 11.635 1.700 2021-12-07T13:13:46.910315264 INFO 2025-10-21 17:15:17,776 calibrate.py _nudge_pos():1806 [1] 5306: 0.050 0.0004548 0.0008180 2926 9.75 6.931 15.547 2021-12-07T13:29:36.115290112 INFO 2025-10-21 17:15:18,147 calibrate.py _nudge_pos():1806 [1] 5336: 0.070 0.0005504 0.0004891 2145 7.15 11.443 12.681 2021-12-07T13:37:15.113846784 INFO 2025-10-21 17:15:18,555 calibrate.py _nudge_pos():1806 [1] 5369: 0.110 0.0006195 0.0006094 2120 7.06 13.030 15.987 2021-12-07T13:44:51.112608768 INFO 2025-10-21 17:17:20,907 calibrate.py _nudge_pos():1862 [1] 15100: - - - 0 0.00 - - INFO 2025-10-21 17:17:20,907 calibrate.py _nudge_pos():1868 [1] Points in final series = 419097 INFO 2025-10-21 17:17:22,022 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/i2map/missionnetcdfs/2021.340.00/i2map_2021.340.00_cal.nc INFO 2025-10-21 17:17:22,179 calibrate.py write_netcdf():3512 [1] Data variables written: depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-10-21 17:17:22,182 process.py align():251 [1] Alignment steps for 2021.340.00 INFO 2025-10-21 17:17:22,214 align.py process_cal():139 [1] Processing i2map_2021.340.00_cal.nc from /data/auv_data/i2map/missionnetcdfs/2021.340.00 INFO 2025-10-21 17:17:22,326 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 17:17:22,337 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 17:17:22,645 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 17:17:22,659 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 17:17:22,923 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 17:17:22,937 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 17:17:23,096 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-10-21 17:17:23,096 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-10-21 17:17:23,199 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 17:17:23,213 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 17:17:23,530 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 17:17:23,701 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/i2map/missionnetcdfs/2021.340.00/i2map_2021.340.00_align.nc INFO 2025-10-21 17:17:23,764 align.py write_netcdf():342 [1] Data variables written: navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-10-21 17:17:23,765 process.py resample():273 [1] Resampling steps for 2021.340.00 INFO 2025-10-21 17:17:23,766 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-10-21 17:17:23,782 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2021.340.00/i2map_2021.340.00_align.nc mission netCDF file INFO 2025-10-21 17:17:23,787 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2021.340.00/i2map_2021.340.00_align.nc mission netCDF file INFO 2025-10-21 17:17:23,790 resample.py get_mission_start_end():1145 [1] navigation: 2021-12-06T17:07:03.770270208 to 2021-12-07T16:27:40.913331456 (0 days 00:00:00 before mission_end) INFO 2025-10-21 17:17:23,795 resample.py get_mission_start_end():1145 [1] tailcone : 2021-12-06T17:06:34.062305280 to 2021-12-07T16:27:40.863334912 (0 days 00:00:00.049996544 before mission_end) INFO 2025-10-21 17:17:23,796 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2021.340.00/i2map_2021.340.00_align.nc mission netCDF file INFO 2025-10-21 17:17:23,796 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter WARNING 2025-10-21 17:17:23,796 resample.py resample_coordinates():259 [1] Variable seabird25p_depth not found in 2021.340.00 align.nc file INFO 2025-10-21 17:17:23,797 resample.py resample_coordinates():264 [1] Cannot continue without a pitch corrected depth coordinate ERROR 2025-10-21 17:17:23,797 process.py process_mission_exception_wrapper():537 [1] An exception occurred Traceback (most recent call last): File "/src/data/process.py", line 529, in process_mission_exception_wrapper self.process_mission(mission, src_dir=src_dir) File "/src/data/process.py", line 486, in process_mission self.resample(mission) File "/src/data/process.py", line 317, in resample resamp.resample_mission(nc_file) File "/src/data/resample.py", line 1210, in resample_mission aggregator = self.resample_coordinates( ^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/src/data/resample.py", line 268, in resample_coordinates raise InvalidAlignFile(msg) from None resample.InvalidAlignFile: seabird25p_depth not found in i2map_2021.340.00_align.nc ERROR 2025-10-21 17:17:23,797 process.py process_mission_exception_wrapper():538 [1] Failed to process to completion: 2021.340.00 INFO 2025-10-21 17:17:23,798 process.py archive():337 [1] Archiving steps for 2021.340.00 INFO 2025-10-21 17:17:23,798 process.py archive():347 [1] nc_file_base = /data/auv_data/i2map/missionnetcdfs/2021.340.00/i2map_2021.340.00, BASE_PATH = /data/auv_data INFO 2025-10-21 17:17:23,800 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/i2map/missionnetcdfs/2021.340.00/i2map_2021.340.00 files to /Volumes/AUVCTD/surveys/2021/netcdf INFO 2025-10-21 17:17:23,802 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2021/netcdf/i2map_2021.340.00_cal.nc INFO 2025-10-21 17:17:23,975 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.340.00/i2map_2021.340.00_cal.nc /Volumes/AUVCTD/surveys/2021/netcdf done. INFO 2025-10-21 17:17:23,976 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2021/netcdf/i2map_2021.340.00_align.nc INFO 2025-10-21 17:17:24,081 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.340.00/i2map_2021.340.00_align.nc /Volumes/AUVCTD/surveys/2021/netcdf done. INFO 2025-10-21 17:17:24,092 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.340.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021340/2021.340.00 done. INFO 2025-10-21 17:17:24,439 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.340.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021340/2021.340.00 done. INFO 2025-10-21 17:17:24,552 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.340.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021340/2021.340.00 done. INFO 2025-10-21 17:17:24,627 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.340.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021340/2021.340.00 done. INFO 2025-10-21 17:17:24,628 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-10-21 17:17:24,628 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.340.00/i2map_2021.340.00_processing.log /Volumes/AUVCTD/surveys/2021/netcdf