INFO 2025-10-21 17:13:47,409 process.py process_mission():429 [1] commandline = /src/data/process_i2map.py -v --noinput --start_year 2021 --end_year 2021 --start_yd 1 --end_yd 365 --num_cores 1 --clobber
INFO 2025-10-21 17:13:47,410 process.py process_mission():449 [1] Processing i2map mission 2021.312.03 by user docker_user on host 5757469a1a5e
INFO 2025-10-21 17:13:47,410 process.py download_process():165 [1] Download and processing steps for 2021.312.03
INFO 2025-10-21 17:13:47,410 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/M3/master/i2MAP/2021/11/20211108/2021.312.03
INFO 2025-10-21 17:13:47,410 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/M3/master/i2MAP/2021/11/20211108/2021.312.03 to /data/auv_data/i2map/missionlogs/2021.312.03
INFO 2025-10-21 17:13:47,778 logs2netcdfs.py download_process_logs():779 [1] Processing mission: i2map 2021.312.03
INFO 2025-10-21 17:13:47,779 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.312.03/gps.log (14396 bytes)
INFO 2025-10-21 17:13:47,788 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.312.03/navigation.log (10979104 bytes)
INFO 2025-10-21 17:13:48,674 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.312.03/parosci.log (3096518 bytes)
INFO 2025-10-21 17:13:48,950 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.312.03/tailCone.log (1557499 bytes)
INFO 2025-10-21 17:13:49,164 logs2netcdfs.py download_process_logs():807 [1] Time to process: 1.39 seconds
INFO 2025-10-21 17:13:49,164 process.py calibrate():227 [1] Calibration steps for 2021.312.03
INFO 2025-10-21 17:13:49,246 calibrate.py _nudge_pos():1680 [1] seg#   end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2025-10-21 17:13:49,248 calibrate.py _nudge_pos():1711 [1]                   -            -            -         0      0.00              -              -                             -
INFO 2025-10-21 17:13:50,374 calibrate.py _nudge_pos():1806 [1]   150:        0.150    0.0009044    0.0057859     31542    105.14          1.278         10.197 2021-11-08T20:41:39.386658304
INFO 2025-10-21 17:13:50,736 calibrate.py _nudge_pos():1862 [1]  150:            -            -            -         2      0.00              -              -
INFO 2025-10-21 17:13:50,736 calibrate.py _nudge_pos():1868 [1] Points in final series = 32283
INFO 2025-10-21 17:13:50,825 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/i2map/missionnetcdfs/2021.312.03/i2map_2021.312.03_cal.nc
INFO 2025-10-21 17:13:50,852 calibrate.py write_netcdf():3512 [1] Data variables written: depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time
INFO 2025-10-21 17:13:50,854 process.py align():251 [1] Alignment steps for 2021.312.03
INFO 2025-10-21 17:13:50,870 align.py process_cal():139 [1] Processing i2map_2021.312.03_cal.nc from /data/auv_data/i2map/missionnetcdfs/2021.312.03
INFO 2025-10-21 17:13:50,883 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc
INFO 2025-10-21 17:13:50,885 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00
INFO 2025-10-21 17:13:50,915 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc
INFO 2025-10-21 17:13:50,918 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00
INFO 2025-10-21 17:13:50,946 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc
INFO 2025-10-21 17:13:50,949 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00
INFO 2025-10-21 17:13:50,966 align.py process_cal():161 [1] Skipping navigation_posx
INFO 2025-10-21 17:13:50,966 align.py process_cal():161 [1] Skipping navigation_posy
INFO 2025-10-21 17:13:50,977 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc
INFO 2025-10-21 17:13:50,980 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00
INFO 2025-10-21 17:13:51,015 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00
INFO 2025-10-21 17:13:51,038 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/i2map/missionnetcdfs/2021.312.03/i2map_2021.312.03_align.nc
INFO 2025-10-21 17:13:51,053 align.py write_netcdf():342 [1] Data variables written: navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time
INFO 2025-10-21 17:13:51,054 process.py resample():273 [1] Resampling steps for 2021.312.03
INFO 2025-10-21 17:13:51,055 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m
INFO 2025-10-21 17:13:51,064 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2021.312.03/i2map_2021.312.03_align.nc mission netCDF file
INFO 2025-10-21 17:13:51,066 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2021.312.03/i2map_2021.312.03_align.nc mission netCDF file
INFO 2025-10-21 17:13:51,067 resample.py get_mission_start_end():1145 [1] navigation: 2021-11-08T18:54:40.486382848 to 2021-11-08T20:42:16.794095616 (0 days 00:00:00.089993728 before mission_end)
INFO 2025-10-21 17:13:51,069 resample.py get_mission_start_end():1145 [1] tailcone  : 2021-11-08T18:54:09.718490624 to 2021-11-08T20:42:16.884089344 (0 days 00:00:00 before mission_end)
INFO 2025-10-21 17:13:51,069 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2021.312.03/i2map_2021.312.03_align.nc mission netCDF file
INFO 2025-10-21 17:13:51,070 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter 
WARNING 2025-10-21 17:13:51,070 resample.py resample_coordinates():259 [1] Variable seabird25p_depth not found in 2021.312.03 align.nc file
INFO 2025-10-21 17:13:51,070 resample.py resample_coordinates():264 [1] Cannot continue without a pitch corrected depth coordinate
ERROR 2025-10-21 17:13:51,070 process.py process_mission_exception_wrapper():537 [1] An exception occurred
Traceback (most recent call last):
  File "/src/data/process.py", line 529, in process_mission_exception_wrapper
    self.process_mission(mission, src_dir=src_dir)
  File "/src/data/process.py", line 486, in process_mission
    self.resample(mission)
  File "/src/data/process.py", line 317, in resample
    resamp.resample_mission(nc_file)
  File "/src/data/resample.py", line 1210, in resample_mission
    aggregator = self.resample_coordinates(
                 ^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/src/data/resample.py", line 268, in resample_coordinates
    raise InvalidAlignFile(msg) from None
resample.InvalidAlignFile: seabird25p_depth not found in i2map_2021.312.03_align.nc
ERROR 2025-10-21 17:13:51,071 process.py process_mission_exception_wrapper():538 [1] Failed to process to completion: 2021.312.03
INFO 2025-10-21 17:13:51,072 process.py archive():337 [1] Archiving steps for 2021.312.03
INFO 2025-10-21 17:13:51,072 process.py archive():347 [1] nc_file_base = /data/auv_data/i2map/missionnetcdfs/2021.312.03/i2map_2021.312.03, BASE_PATH = /data/auv_data
INFO 2025-10-21 17:13:51,072 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/i2map/missionnetcdfs/2021.312.03/i2map_2021.312.03 files to /Volumes/AUVCTD/surveys/2021/netcdf
INFO 2025-10-21 17:13:51,074 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2021/netcdf/i2map_2021.312.03_cal.nc
INFO 2025-10-21 17:13:51,095 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.312.03/i2map_2021.312.03_cal.nc /Volumes/AUVCTD/surveys/2021/netcdf done.
INFO 2025-10-21 17:13:51,096 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2021/netcdf/i2map_2021.312.03_align.nc
INFO 2025-10-21 17:13:51,113 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.312.03/i2map_2021.312.03_align.nc /Volumes/AUVCTD/surveys/2021/netcdf done.
INFO 2025-10-21 17:13:51,119 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.312.03/gps.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021312/2021.312.03 done.
INFO 2025-10-21 17:13:51,156 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.312.03/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021312/2021.312.03 done.
INFO 2025-10-21 17:13:51,171 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.312.03/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021312/2021.312.03 done.
INFO 2025-10-21 17:13:51,183 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.312.03/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021312/2021.312.03 done.
INFO 2025-10-21 17:13:51,183 archive.py copy_to_AUVTCD():116 [1] Archiving product files
INFO 2025-10-21 17:13:51,183 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.312.03/i2map_2021.312.03_processing.log /Volumes/AUVCTD/surveys/2021/netcdf