INFO 2025-10-21 17:13:41,981 process.py process_mission():429 [1] commandline = /src/data/process_i2map.py -v --noinput --start_year 2021 --end_year 2021 --start_yd 1 --end_yd 365 --num_cores 1 --clobber
INFO 2025-10-21 17:13:41,981 process.py process_mission():449 [1] Processing i2map mission 2021.312.01 by user docker_user on host 5757469a1a5e
INFO 2025-10-21 17:13:41,982 process.py download_process():165 [1] Download and processing steps for 2021.312.01
INFO 2025-10-21 17:13:41,982 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/M3/master/i2MAP/2021/11/20211108/2021.312.01
INFO 2025-10-21 17:13:41,982 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/M3/master/i2MAP/2021/11/20211108/2021.312.01 to /data/auv_data/i2map/missionlogs/2021.312.01
INFO 2025-10-21 17:13:42,219 logs2netcdfs.py download_process_logs():779 [1] Processing mission: i2map 2021.312.01
INFO 2025-10-21 17:13:42,219 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.312.01/gps.log (16340 bytes)
INFO 2025-10-21 17:13:42,229 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.312.01/navigation.log (2425384 bytes)
INFO 2025-10-21 17:13:42,434 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.312.01/parosci.log (693638 bytes)
INFO 2025-10-21 17:13:42,498 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.312.01/tailCone.log (349483 bytes)
INFO 2025-10-21 17:13:42,548 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.33 seconds
INFO 2025-10-21 17:13:42,548 process.py calibrate():227 [1] Calibration steps for 2021.312.01
INFO 2025-10-21 17:13:42,598 calibrate.py _nudge_pos():1680 [1] seg#   end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2025-10-21 17:13:42,599 calibrate.py _nudge_pos():1711 [1]                   -            -            -         0      0.00              -              -                             -
INFO 2025-10-21 17:13:43,414 calibrate.py _nudge_pos():1806 [1]   120:        0.130    0.0008772    0.0012834      6260     20.86          6.247         11.398 2021-11-08T18:36:05.852740608
INFO 2025-10-21 17:13:44,286 calibrate.py _nudge_pos():1862 [1]  175:            -            -            -         1      0.00              -              -
INFO 2025-10-21 17:13:44,286 calibrate.py _nudge_pos():1868 [1] Points in final series = 7125
INFO 2025-10-21 17:13:44,314 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/i2map/missionnetcdfs/2021.312.01/i2map_2021.312.01_cal.nc
INFO 2025-10-21 17:13:44,334 calibrate.py write_netcdf():3512 [1] Data variables written: depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time
INFO 2025-10-21 17:13:44,336 process.py align():251 [1] Alignment steps for 2021.312.01
INFO 2025-10-21 17:13:44,350 align.py process_cal():139 [1] Processing i2map_2021.312.01_cal.nc from /data/auv_data/i2map/missionnetcdfs/2021.312.01
INFO 2025-10-21 17:13:44,355 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc
INFO 2025-10-21 17:13:44,357 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00
INFO 2025-10-21 17:13:44,370 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc
INFO 2025-10-21 17:13:44,372 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00
INFO 2025-10-21 17:13:44,384 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc
INFO 2025-10-21 17:13:44,386 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00
INFO 2025-10-21 17:13:44,393 align.py process_cal():161 [1] Skipping navigation_posx
INFO 2025-10-21 17:13:44,393 align.py process_cal():161 [1] Skipping navigation_posy
INFO 2025-10-21 17:13:44,398 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc
INFO 2025-10-21 17:13:44,400 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00
INFO 2025-10-21 17:13:44,415 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00
INFO 2025-10-21 17:13:44,426 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/i2map/missionnetcdfs/2021.312.01/i2map_2021.312.01_align.nc
INFO 2025-10-21 17:13:44,438 align.py write_netcdf():342 [1] Data variables written: navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time
INFO 2025-10-21 17:13:44,439 process.py resample():273 [1] Resampling steps for 2021.312.01
INFO 2025-10-21 17:13:44,439 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m
INFO 2025-10-21 17:13:44,447 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2021.312.01/i2map_2021.312.01_align.nc mission netCDF file
INFO 2025-10-21 17:13:44,449 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2021.312.01/i2map_2021.312.01_align.nc mission netCDF file
INFO 2025-10-21 17:13:44,450 resample.py get_mission_start_end():1145 [1] navigation: 2021-11-08T18:13:55.373884672 to 2021-11-08T18:37:40.046288128 (0 days 00:00:00 before mission_end)
INFO 2025-10-21 17:13:44,451 resample.py get_mission_start_end():1145 [1] tailcone  : 2021-11-08T18:13:25.985897728 to 2021-11-08T18:37:39.976292608 (0 days 00:00:00.069995520 before mission_end)
INFO 2025-10-21 17:13:44,451 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2021.312.01/i2map_2021.312.01_align.nc mission netCDF file
INFO 2025-10-21 17:13:44,452 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter 
WARNING 2025-10-21 17:13:44,452 resample.py resample_coordinates():259 [1] Variable seabird25p_depth not found in 2021.312.01 align.nc file
INFO 2025-10-21 17:13:44,452 resample.py resample_coordinates():264 [1] Cannot continue without a pitch corrected depth coordinate
ERROR 2025-10-21 17:13:44,452 process.py process_mission_exception_wrapper():537 [1] An exception occurred
Traceback (most recent call last):
  File "/src/data/process.py", line 529, in process_mission_exception_wrapper
    self.process_mission(mission, src_dir=src_dir)
  File "/src/data/process.py", line 486, in process_mission
    self.resample(mission)
  File "/src/data/process.py", line 317, in resample
    resamp.resample_mission(nc_file)
  File "/src/data/resample.py", line 1210, in resample_mission
    aggregator = self.resample_coordinates(
                 ^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/src/data/resample.py", line 268, in resample_coordinates
    raise InvalidAlignFile(msg) from None
resample.InvalidAlignFile: seabird25p_depth not found in i2map_2021.312.01_align.nc
ERROR 2025-10-21 17:13:44,453 process.py process_mission_exception_wrapper():538 [1] Failed to process to completion: 2021.312.01
INFO 2025-10-21 17:13:44,453 process.py archive():337 [1] Archiving steps for 2021.312.01
INFO 2025-10-21 17:13:44,454 process.py archive():347 [1] nc_file_base = /data/auv_data/i2map/missionnetcdfs/2021.312.01/i2map_2021.312.01, BASE_PATH = /data/auv_data
INFO 2025-10-21 17:13:44,454 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/i2map/missionnetcdfs/2021.312.01/i2map_2021.312.01 files to /Volumes/AUVCTD/surveys/2021/netcdf
INFO 2025-10-21 17:13:44,456 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2021/netcdf/i2map_2021.312.01_cal.nc
INFO 2025-10-21 17:13:44,467 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.312.01/i2map_2021.312.01_cal.nc /Volumes/AUVCTD/surveys/2021/netcdf done.
INFO 2025-10-21 17:13:44,468 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2021/netcdf/i2map_2021.312.01_align.nc
INFO 2025-10-21 17:13:44,479 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.312.01/i2map_2021.312.01_align.nc /Volumes/AUVCTD/surveys/2021/netcdf done.
INFO 2025-10-21 17:13:44,485 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.312.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021312/2021.312.01 done.
INFO 2025-10-21 17:13:44,501 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.312.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021312/2021.312.01 done.
INFO 2025-10-21 17:13:44,510 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.312.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021312/2021.312.01 done.
INFO 2025-10-21 17:13:44,518 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.312.01/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021312/2021.312.01 done.
INFO 2025-10-21 17:13:44,518 archive.py copy_to_AUVTCD():116 [1] Archiving product files
INFO 2025-10-21 17:13:44,518 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.312.01/i2map_2021.312.01_processing.log /Volumes/AUVCTD/surveys/2021/netcdf