INFO 2025-10-21 17:13:39,305 process.py process_mission():429 [1] commandline = /src/data/process_i2map.py -v --noinput --start_year 2021 --end_year 2021 --start_yd 1 --end_yd 365 --num_cores 1 --clobber INFO 2025-10-21 17:13:39,305 process.py process_mission():449 [1] Processing i2map mission 2021.312.00 by user docker_user on host 5757469a1a5e INFO 2025-10-21 17:13:39,305 process.py download_process():165 [1] Download and processing steps for 2021.312.00 INFO 2025-10-21 17:13:39,305 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/M3/master/i2MAP/2021/11/20211108/2021.312.00 INFO 2025-10-21 17:13:39,306 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/M3/master/i2MAP/2021/11/20211108/2021.312.00 to /data/auv_data/i2map/missionlogs/2021.312.00 INFO 2025-10-21 17:13:39,548 logs2netcdfs.py download_process_logs():779 [1] Processing mission: i2map 2021.312.00 INFO 2025-10-21 17:13:39,549 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.312.00/gps.log (13028 bytes) INFO 2025-10-21 17:13:39,558 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.312.00/navigation.log (2786464 bytes) INFO 2025-10-21 17:13:39,783 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.312.00/parosci.log (794534 bytes) INFO 2025-10-21 17:13:39,854 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2021.312.00/parosci.log: [1] INFO 2025-10-21 17:13:39,857 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.312.00/tailCone.log (400603 bytes) INFO 2025-10-21 17:13:39,913 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.36 seconds INFO 2025-10-21 17:13:39,913 process.py calibrate():227 [1] Calibration steps for 2021.312.00 INFO 2025-10-21 17:13:39,964 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-10-21 17:13:39,966 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-10-21 17:13:40,923 calibrate.py _nudge_pos():1806 [1] 134: 0.100 -0.0001223 -0.0000143 55 0.18 -100.954 -14.693 2021-11-08T17:02:34.487145472 INFO 2025-10-21 17:13:40,952 calibrate.py _nudge_pos():1806 [1] 137: 0.100 -0.0003538 0.0000914 20 0.06 -829.953 267.469 2021-11-08T17:02:40.486734336 INFO 2025-10-21 17:13:40,983 calibrate.py _nudge_pos():1806 [1] 140: 0.010 0.0003871 0.0006657 7481 24.93 2.307 4.947 2021-11-08T17:27:38.694100224 INFO 2025-10-21 17:13:41,249 calibrate.py _nudge_pos():1862 [1] 130: - - - 1 0.00 - - INFO 2025-10-21 17:13:41,249 calibrate.py _nudge_pos():1868 [1] Points in final series = 8187 INFO 2025-10-21 17:13:41,568 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/i2map/missionnetcdfs/2021.312.00/i2map_2021.312.00_cal.nc INFO 2025-10-21 17:13:41,588 calibrate.py write_netcdf():3512 [1] Data variables written: depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-10-21 17:13:41,591 process.py align():251 [1] Alignment steps for 2021.312.00 INFO 2025-10-21 17:13:41,604 align.py process_cal():139 [1] Processing i2map_2021.312.00_cal.nc from /data/auv_data/i2map/missionnetcdfs/2021.312.00 INFO 2025-10-21 17:13:41,611 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 17:13:41,612 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 17:13:41,627 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 17:13:41,629 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 17:13:41,641 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 17:13:41,643 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 17:13:41,651 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-10-21 17:13:41,651 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-10-21 17:13:41,656 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 17:13:41,658 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 17:13:41,675 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 17:13:41,687 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/i2map/missionnetcdfs/2021.312.00/i2map_2021.312.00_align.nc INFO 2025-10-21 17:13:41,699 align.py write_netcdf():342 [1] Data variables written: navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-10-21 17:13:41,700 process.py resample():273 [1] Resampling steps for 2021.312.00 INFO 2025-10-21 17:13:41,701 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-10-21 17:13:41,709 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2021.312.00/i2map_2021.312.00_align.nc mission netCDF file INFO 2025-10-21 17:13:41,711 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2021.312.00/i2map_2021.312.00_align.nc mission netCDF file INFO 2025-10-21 17:13:41,712 resample.py get_mission_start_end():1145 [1] navigation: 2021-11-08T17:00:49.734321664 to 2021-11-08T17:28:06.892168448 (0 days 00:00:00.029998080 before mission_end) INFO 2025-10-21 17:13:41,713 resample.py get_mission_start_end():1145 [1] tailcone : 2021-11-08T17:00:20.146348544 to 2021-11-08T17:28:06.922166528 (0 days 00:00:00 before mission_end) INFO 2025-10-21 17:13:41,714 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2021.312.00/i2map_2021.312.00_align.nc mission netCDF file INFO 2025-10-21 17:13:41,714 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter WARNING 2025-10-21 17:13:41,714 resample.py resample_coordinates():259 [1] Variable seabird25p_depth not found in 2021.312.00 align.nc file INFO 2025-10-21 17:13:41,714 resample.py resample_coordinates():264 [1] Cannot continue without a pitch corrected depth coordinate ERROR 2025-10-21 17:13:41,715 process.py process_mission_exception_wrapper():537 [1] An exception occurred Traceback (most recent call last): File "/src/data/process.py", line 529, in process_mission_exception_wrapper self.process_mission(mission, src_dir=src_dir) File "/src/data/process.py", line 486, in process_mission self.resample(mission) File "/src/data/process.py", line 317, in resample resamp.resample_mission(nc_file) File "/src/data/resample.py", line 1210, in resample_mission aggregator = self.resample_coordinates( ^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/src/data/resample.py", line 268, in resample_coordinates raise InvalidAlignFile(msg) from None resample.InvalidAlignFile: seabird25p_depth not found in i2map_2021.312.00_align.nc ERROR 2025-10-21 17:13:41,715 process.py process_mission_exception_wrapper():538 [1] Failed to process to completion: 2021.312.00 INFO 2025-10-21 17:13:41,716 process.py archive():337 [1] Archiving steps for 2021.312.00 INFO 2025-10-21 17:13:41,716 process.py archive():347 [1] nc_file_base = /data/auv_data/i2map/missionnetcdfs/2021.312.00/i2map_2021.312.00, BASE_PATH = /data/auv_data INFO 2025-10-21 17:13:41,716 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/i2map/missionnetcdfs/2021.312.00/i2map_2021.312.00 files to /Volumes/AUVCTD/surveys/2021/netcdf INFO 2025-10-21 17:13:41,718 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2021/netcdf/i2map_2021.312.00_cal.nc INFO 2025-10-21 17:13:41,731 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.312.00/i2map_2021.312.00_cal.nc /Volumes/AUVCTD/surveys/2021/netcdf done. INFO 2025-10-21 17:13:41,732 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2021/netcdf/i2map_2021.312.00_align.nc INFO 2025-10-21 17:13:41,743 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.312.00/i2map_2021.312.00_align.nc /Volumes/AUVCTD/surveys/2021/netcdf done. INFO 2025-10-21 17:13:41,752 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.312.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021312/2021.312.00 done. INFO 2025-10-21 17:13:41,770 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.312.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021312/2021.312.00 done. INFO 2025-10-21 17:13:41,781 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.312.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021312/2021.312.00 done. INFO 2025-10-21 17:13:41,789 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.312.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021312/2021.312.00 done. INFO 2025-10-21 17:13:41,789 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-10-21 17:13:41,790 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.312.00/i2map_2021.312.00_processing.log /Volumes/AUVCTD/surveys/2021/netcdf