INFO 2025-10-21 17:00:50,619 process.py process_mission():429 [1] commandline = /src/data/process_i2map.py -v --noinput --start_year 2021 --end_year 2021 --start_yd 1 --end_yd 365 --num_cores 1 --clobber INFO 2025-10-21 17:00:50,619 process.py process_mission():449 [1] Processing i2map mission 2021.291.00 by user docker_user on host 5757469a1a5e INFO 2025-10-21 17:00:50,619 process.py download_process():165 [1] Download and processing steps for 2021.291.00 INFO 2025-10-21 17:00:50,619 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/M3/master/i2MAP/2021/10/20211018/2021.291.00 INFO 2025-10-21 17:00:50,620 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/M3/master/i2MAP/2021/10/20211018/2021.291.00 to /data/auv_data/i2map/missionlogs/2021.291.00 INFO 2025-10-21 17:00:53,642 logs2netcdfs.py download_process_logs():779 [1] Processing mission: i2map 2021.291.00 INFO 2025-10-21 17:00:53,643 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.291.00/gps.log (1979708 bytes) INFO 2025-10-21 17:00:53,863 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.291.00/navigation.log (174384804 bytes) INFO 2025-10-21 17:01:08,866 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.291.00/parosci.log (49013366 bytes) INFO 2025-10-21 17:01:13,428 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.291.00/seabird25p.log (111493107 bytes) INFO 2025-10-21 17:01:21,574 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2021.291.00/seabird25p.log: [1] INFO 2025-10-21 17:01:21,999 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.291.00/tailCone.log (24626347 bytes) INFO 2025-10-21 17:01:25,348 logs2netcdfs.py download_process_logs():807 [1] Time to process: 31.71 seconds INFO 2025-10-21 17:01:25,348 process.py calibrate():227 [1] Calibration steps for 2021.291.00 INFO 2025-10-21 17:01:26,056 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-10-21 17:01:26,059 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-10-21 17:01:27,029 calibrate.py _nudge_pos():1806 [1] 112: 0.080 -0.0005233 0.0083240 35496 118.32 -0.657 13.036 2021-10-18T17:54:35.015491840 INFO 2025-10-21 17:01:28,956 calibrate.py _nudge_pos():1806 [1] 260: 0.180 -0.0006366 0.0017337 6010 20.03 -4.722 16.039 2021-10-18T18:17:05.013010432 INFO 2025-10-21 17:01:30,365 calibrate.py _nudge_pos():1806 [1] 379: 0.190 -0.0000216 -0.0000309 19 0.06 -53.543 -95.313 2021-10-18T18:19:07.014652928 INFO 2025-10-21 17:01:30,377 calibrate.py _nudge_pos():1806 [1] 380: 0.060 0.0011428 0.0067957 42709 142.36 1.193 8.845 2021-10-18T20:41:28.809499648 INFO 2025-10-21 17:01:31,919 calibrate.py _nudge_pos():1806 [1] 510: 0.110 0.0000681 0.0014203 5815 19.38 0.522 13.580 2021-10-18T21:03:00.810991872 INFO 2025-10-21 17:01:32,567 calibrate.py _nudge_pos():1806 [1] 564: 0.140 -0.0001957 0.0008919 3065 10.21 -2.847 16.182 2021-10-18T21:14:06.815367168 INFO 2025-10-21 17:01:35,413 calibrate.py _nudge_pos():1806 [1] 803: 0.030 -0.0004693 0.0009026 3341 11.13 -6.262 15.023 2021-10-18T21:29:13.013288448 INFO 2025-10-21 17:01:36,111 calibrate.py _nudge_pos():1806 [1] 862: 0.180 0.0016947 0.0092728 35957 119.85 2.101 14.336 2021-10-18T23:30:02.416670208 INFO 2025-10-21 17:01:37,221 calibrate.py _nudge_pos():1806 [1] 953: 0.070 -0.0009729 0.0015005 6501 21.67 -6.671 12.833 2021-10-18T23:53:12.611435520 INFO 2025-10-21 17:01:37,925 calibrate.py _nudge_pos():1806 [1] 1011: 0.110 0.0024617 0.0062270 42693 142.31 2.570 8.108 2021-10-19T02:16:28.212596480 INFO 2025-10-21 17:01:38,885 calibrate.py _nudge_pos():1806 [1] 1089: 0.160 -0.0002484 0.0005833 5235 17.45 -2.116 6.195 2021-10-19T02:35:12.215596800 INFO 2025-10-21 17:01:39,232 calibrate.py _nudge_pos():1806 [1] 1117: 0.020 -0.0004243 0.0002739 2611 8.70 -7.246 5.834 2021-10-19T02:44:21.407974656 INFO 2025-10-21 17:01:40,194 calibrate.py _nudge_pos():1806 [1] 1196: 0.040 -0.0003487 0.0002764 2215 7.38 -7.020 6.940 2021-10-19T02:53:02.412283392 INFO 2025-10-21 17:01:40,880 calibrate.py _nudge_pos():1806 [1] 1253: 0.030 -0.0000503 -0.0000602 25 0.08 -93.474 -139.495 2021-10-19T02:54:03.408104960 INFO 2025-10-21 17:01:40,917 calibrate.py _nudge_pos():1806 [1] 1256: 0.100 -0.0004197 0.0003988 2090 6.96 -8.956 10.614 2021-10-19T03:01:03.409332992 INFO 2025-10-21 17:01:41,684 calibrate.py _nudge_pos():1806 [1] 1319: 0.120 -0.0005048 0.0000578 2175 7.25 -10.350 1.478 2021-10-19T03:09:20.415285504 INFO 2025-10-21 17:01:42,750 calibrate.py _nudge_pos():1806 [1] 1404: 0.140 -0.0001379 -0.0001939 365 1.21 -16.891 -29.606 2021-10-19T03:11:58.414461952 INFO 2025-10-21 17:01:43,304 calibrate.py _nudge_pos():1806 [1] 1445: 0.180 -0.0002532 -0.0000778 1760 5.86 -6.415 -2.460 2021-10-19T03:18:30.407608576 INFO 2025-10-21 17:01:43,981 calibrate.py _nudge_pos():1806 [1] 1498: 0.180 -0.0003728 0.0000606 400 1.33 -41.653 8.443 2021-10-19T03:20:42.408566016 INFO 2025-10-21 17:01:44,715 calibrate.py _nudge_pos():1806 [1] 1557: 0.200 -0.0002738 0.0000653 1840 6.13 -6.636 1.973 2021-10-19T03:27:48.409382912 INFO 2025-10-21 17:01:45,555 calibrate.py _nudge_pos():1806 [1] 1623: 0.010 -0.0002908 0.0000610 1361 4.53 -9.531 2.492 2021-10-19T03:33:25.616282624 INFO 2025-10-21 17:01:46,407 calibrate.py _nudge_pos():1806 [1] 1694: 0.060 -0.0005510 0.0002061 2170 7.23 -11.322 5.282 2021-10-19T03:41:49.611756544 INFO 2025-10-21 17:01:48,916 calibrate.py _nudge_pos():1806 [1] 1891: 0.090 -0.0005543 0.0003689 2575 8.58 -9.598 7.967 2021-10-19T03:53:40.613049600 INFO 2025-10-21 17:02:29,265 calibrate.py _nudge_pos():1806 [1] 5187: 0.160 0.0000254 0.0000050 20 0.06 59.696 14.530 2021-10-19T04:48:39.807039232 INFO 2025-10-21 17:02:37,196 calibrate.py _nudge_pos():1806 [1] 5819: 0.040 -0.0002290 0.0005957 3751 12.50 -2.722 8.830 2021-10-19T05:11:42.012351744 INFO 2025-10-21 17:02:38,707 calibrate.py _nudge_pos():1806 [1] 5942: 0.080 -0.0010494 0.0003054 2805 9.35 -16.682 6.056 2021-10-19T05:23:05.015562752 INFO 2025-10-21 17:02:38,899 calibrate.py _nudge_pos():1806 [1] 5958: 0.110 -0.0000566 -0.0000015 110 0.36 -23.135 -0.779 2021-10-19T05:23:42.013028352 INFO 2025-10-21 17:02:38,962 calibrate.py _nudge_pos():1806 [1] 5963: 0.020 -0.0020381 0.0085416 35458 118.19 -2.562 13.392 2021-10-19T07:21:57.606947072 INFO 2025-10-21 17:02:40,140 calibrate.py _nudge_pos():1806 [1] 6045: 0.100 0.0000023 0.0013099 6256 20.85 0.016 11.642 2021-10-19T07:44:09.615698176 INFO 2025-10-21 17:02:43,843 calibrate.py _nudge_pos():1806 [1] 6335: 0.040 0.0023257 0.0077551 44139 147.13 2.348 9.767 2021-10-19T10:16:06.411154688 INFO 2025-10-21 17:02:45,402 calibrate.py _nudge_pos():1806 [1] 6453: 0.050 0.0000688 -0.0003696 6376 21.25 0.481 -3.223 2021-10-19T10:39:18.415795712 INFO 2025-10-21 17:02:45,962 calibrate.py _nudge_pos():1806 [1] 6497: 0.130 -0.0000913 0.0002438 2330 7.76 -1.746 5.818 2021-10-19T10:47:47.410927360 INFO 2025-10-21 17:02:46,969 calibrate.py _nudge_pos():1806 [1] 6577: 0.160 -0.0002024 0.0001690 2510 8.36 -3.596 3.745 2021-10-19T10:57:28.411126016 INFO 2025-10-21 17:02:48,306 calibrate.py _nudge_pos():1806 [1] 6684: 0.080 0.0008678 0.0053598 36938 123.12 1.047 8.066 2021-10-19T13:02:22.007779584 INFO 2025-10-21 17:02:53,471 calibrate.py _nudge_pos():1806 [1] 7091: 0.090 0.0014457 0.0022412 9889 32.96 6.516 12.599 2021-10-19T13:42:06.214450432 INFO 2025-10-21 17:02:54,806 calibrate.py _nudge_pos():1806 [1] 7197: 0.200 0.0014072 0.0012723 9835 32.78 6.378 7.192 2021-10-19T14:16:38.212508672 INFO 2025-10-21 17:03:01,511 calibrate.py _nudge_pos():1806 [1] 7714: 0.110 0.0000706 0.0001511 3290 10.96 0.957 2.555 2021-10-19T14:36:12.412070400 INFO 2025-10-21 17:03:02,709 calibrate.py _nudge_pos():1806 [1] 7809: 0.160 0.0000263 0.0003770 2800 9.33 0.418 7.487 2021-10-19T14:47:06.407268864 INFO 2025-10-21 17:03:04,936 calibrate.py _nudge_pos():1806 [1] 7986: 0.190 -0.0001919 0.0003536 2900 9.66 -2.950 6.780 2021-10-19T14:59:42.415478784 INFO 2025-10-21 17:07:19,491 calibrate.py _nudge_pos():1862 [1] 27446: - - - 1 0.00 - - INFO 2025-10-21 17:07:19,492 calibrate.py _nudge_pos():1868 [1] Points in final series = 511475 INFO 2025-10-21 17:08:04,340 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 143 on port side INFO 2025-10-21 17:08:04,342 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "143" INFO 2025-10-21 17:08:04,580 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2011_June 2012_Oct 2013-Dec 2013_July 2015-Oct 2017_Mar 2020_Feb 2023_Jan 2024_Jan WARNING 2025-10-21 17:08:04,585 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2011_June INFO 2025-10-21 17:08:04,585 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 17:08:04,591 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2012_Oct INFO 2025-10-21 17:08:04,592 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 17:08:04,597 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013-Dec INFO 2025-10-21 17:08:04,597 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 17:08:04,603 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July INFO 2025-10-21 17:08:04,604 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 17:08:04,609 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2015-Oct INFO 2025-10-21 17:08:04,609 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 17:08:04,614 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2017_Mar INFO 2025-10-21 17:08:04,615 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 17:08:04,620 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2020_Feb INFO 2025-10-21 17:08:04,620 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 17:08:04,626 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2023_Jan INFO 2025-10-21 17:08:04,626 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 17:08:04,631 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2024_Jan INFO 2025-10-21 17:08:04,631 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 17:08:04,639 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July/Oxygen_SBE43_0143.XML has CalibrationDate 2013-07-17 00:00:00+00:00 INFO 2025-10-21 17:08:04,639 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July/Oxygen_SBE43_0143.XML is just before 2021.291.00 with mission_start=2021-10-18T15:55:35.624573440 INFO 2025-10-21 17:08:19,361 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_port: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July/Oxygen_SBE43_0143.XML file: {'Soc': 0.42815, 'offset': -0.4829, 'A': -0.0031081, 'B': 0.0001985, 'C': -3.3814e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.28, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 17:08:19,372 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 3968 on stbd side INFO 2025-10-21 17:08:19,373 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "3968" INFO 2025-10-21 17:08:19,541 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2020_Jul 2025_Jan WARNING 2025-10-21 17:08:19,545 calibrate.py _cal_date_xml_files():1081 [1] Found 3 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul INFO 2025-10-21 17:08:19,545 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 17:08:19,550 calibrate.py _cal_date_xml_files():1081 [1] Found 3 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2025_Jan INFO 2025-10-21 17:08:19,550 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 17:08:19,557 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml has CalibrationDate 2020-06-16 00:00:00+00:00 INFO 2025-10-21 17:08:19,557 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml is just before 2021.291.00 with mission_start=2021-10-18T15:55:35.624573440 INFO 2025-10-21 17:08:34,157 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_stbd: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml file: {'Soc': 0.43332, 'offset': -0.5106, 'A': -0.0037655, 'B': 0.00018802, 'C': -3.038e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.54, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 17:08:54,273 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 57 seconds, d_end_time_diff: -1 seconds INFO 2025-10-21 17:09:00,082 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 57 seconds, d_end_time_diff: -1 seconds INFO 2025-10-21 17:09:00,093 calibrate.py _ctd_process():2919 [1] Performing range checking of ['seabird25p_salinity'] in 2021.291.00/seabird25p.nc INFO 2025-10-21 17:09:00,096 calibrate.py _range_qc_combined_nc():898 [1] Setting 123 seabird25p_salinity values to NaN INFO 2025-10-21 17:09:00,096 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('seabird25p_salinity', Range(min=30, max=40))] INFO 2025-10-21 17:09:00,096 calibrate.py _range_qc_combined_nc():936 [1] Done range checking seabird25p INFO 2025-10-21 17:09:00,485 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/i2map/missionnetcdfs/2021.291.00/i2map_2021.291.00_cal.nc INFO 2025-10-21 17:10:12,606 calibrate.py write_netcdf():3512 [1] Data variables written: depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_par, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_propRpm, tailcone_time, time INFO 2025-10-21 17:10:12,609 process.py align():251 [1] Alignment steps for 2021.291.00 INFO 2025-10-21 17:10:12,658 align.py process_cal():139 [1] Processing i2map_2021.291.00_cal.nc from /data/auv_data/i2map/missionnetcdfs/2021.291.00 INFO 2025-10-21 17:10:12,791 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 17:10:12,804 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 17:10:13,123 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 17:10:13,139 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 17:10:13,457 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 17:10:13,480 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 17:10:13,669 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-10-21 17:10:13,669 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-10-21 17:10:13,795 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 17:10:13,812 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 17:10:14,158 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.291.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:10:14,185 align.py process_cal():249 [1] seabird25p_temperature: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:10:14,638 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.291.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:10:14,668 align.py process_cal():249 [1] seabird25p_conductivity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:10:15,124 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.291.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:10:15,152 align.py process_cal():249 [1] seabird25p_salinity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:10:15,602 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.291.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:10:15,632 align.py process_cal():249 [1] seabird25p_temperature_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:10:16,094 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.291.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:10:16,122 align.py process_cal():249 [1] seabird25p_conductivity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:10:16,571 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.291.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:10:16,600 align.py process_cal():249 [1] seabird25p_salinity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:10:17,055 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.291.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:10:17,083 align.py process_cal():249 [1] seabird25p_dissolvedO2_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:10:17,534 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.291.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:10:17,561 align.py process_cal():249 [1] seabird25p_oxygen_mll_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:10:18,016 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.291.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:10:18,043 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:10:18,491 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.291.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:10:18,526 align.py process_cal():249 [1] seabird25p_dissolvedO2_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:10:18,975 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.291.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:10:19,001 align.py process_cal():249 [1] seabird25p_oxygen_mll_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:10:19,450 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.291.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:10:19,477 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:10:19,927 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.291.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:10:19,953 align.py process_cal():249 [1] seabird25p_beam_transmittance: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:10:20,402 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.291.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:10:20,425 align.py process_cal():249 [1] seabird25p_depth: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:10:20,875 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.291.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:10:20,909 align.py process_cal():249 [1] seabird25p_par: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:10:21,400 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 17:10:21,605 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/i2map/missionnetcdfs/2021.291.00/i2map_2021.291.00_align.nc INFO 2025-10-21 17:10:21,793 align.py write_netcdf():342 [1] Data variables written: navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_latitude, seabird25p_longitude, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_par, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-10-21 17:10:21,795 process.py resample():273 [1] Resampling steps for 2021.291.00 INFO 2025-10-21 17:10:21,795 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-10-21 17:10:21,826 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2021.291.00/i2map_2021.291.00_align.nc mission netCDF file INFO 2025-10-21 17:10:21,836 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2021.291.00/i2map_2021.291.00_align.nc mission netCDF file INFO 2025-10-21 17:10:21,840 resample.py get_mission_start_end():1145 [1] navigation: 2021-10-18T15:55:03.256790784 to 2021-10-19T20:24:41.209719552 (0 days 00:00:00.009999360 before mission_end) INFO 2025-10-21 17:10:21,847 resample.py get_mission_start_end():1145 [1] seabird25p: 2021-10-18T15:55:35.624573440 to 2021-10-19T20:24:41.219718912 (0 days 00:00:00 before mission_end) INFO 2025-10-21 17:10:21,852 resample.py get_mission_start_end():1145 [1] tailcone : 2021-10-18T15:54:33.618821120 to 2021-10-19T20:24:41.209719552 (0 days 00:00:00.009999360 before mission_end) INFO 2025-10-21 17:10:21,854 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2021.291.00/i2map_2021.291.00_align.nc mission netCDF file INFO 2025-10-21 17:10:21,854 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-10-21 17:10:23,185 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-10-21 17:10:23,344 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-10-21 17:10:23,498 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-10-21 17:10:23,648 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-10-21 17:10:23,882 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature with frequency 1S following 3 point median filter INFO 2025-10-21 17:10:24,116 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity with frequency 1S following 3 point median filter INFO 2025-10-21 17:10:24,367 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity with frequency 1S following 3 point median filter INFO 2025-10-21 17:10:24,601 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 17:10:24,836 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 17:10:25,071 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 17:10:25,304 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_port with frequency 1S following 3 point median filter INFO 2025-10-21 17:10:25,538 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_port with frequency 1S following 3 point median filter INFO 2025-10-21 17:10:25,771 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_port with frequency 1S following 3 point median filter INFO 2025-10-21 17:10:26,002 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 17:10:26,236 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 17:10:26,469 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 17:10:26,712 resample.py resample_variable():1031 [1] Resampling seabird25p_beam_transmittance with frequency 1S following 3 point median filter INFO 2025-10-21 17:10:26,953 resample.py resample_variable():1031 [1] Resampling seabird25p_par with frequency 1S following 3 point median filter INFO 2025-10-21 17:10:27,113 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-10-21 17:10:27,744 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/i2map/missionnetcdfs/2021.291.00/i2map_2021.291.00_1S.nc INFO 2025-10-21 17:10:27,748 process.py archive():337 [1] Archiving steps for 2021.291.00 INFO 2025-10-21 17:10:27,748 process.py archive():347 [1] nc_file_base = /data/auv_data/i2map/missionnetcdfs/2021.291.00/i2map_2021.291.00, BASE_PATH = /data/auv_data INFO 2025-10-21 17:10:27,750 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/i2map/missionnetcdfs/2021.291.00/i2map_2021.291.00 files to /Volumes/AUVCTD/surveys/2021/netcdf INFO 2025-10-21 17:10:27,752 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2021/netcdf/i2map_2021.291.00_1S.nc INFO 2025-10-21 17:10:27,811 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.291.00/i2map_2021.291.00_1S.nc /Volumes/AUVCTD/surveys/2021/netcdf done. INFO 2025-10-21 17:10:27,812 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2021/netcdf/i2map_2021.291.00_cal.nc INFO 2025-10-21 17:10:28,225 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.291.00/i2map_2021.291.00_cal.nc /Volumes/AUVCTD/surveys/2021/netcdf done. INFO 2025-10-21 17:10:28,226 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2021/netcdf/i2map_2021.291.00_align.nc INFO 2025-10-21 17:10:28,631 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.291.00/i2map_2021.291.00_align.nc /Volumes/AUVCTD/surveys/2021/netcdf done. INFO 2025-10-21 17:10:28,646 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.291.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021291/2021.291.00 done. INFO 2025-10-21 17:10:29,042 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.291.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021291/2021.291.00 done. INFO 2025-10-21 17:10:29,174 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.291.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021291/2021.291.00 done. INFO 2025-10-21 17:10:29,441 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.291.00/seabird25p.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021291/2021.291.00 done. INFO 2025-10-21 17:10:29,536 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.291.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021291/2021.291.00 done. INFO 2025-10-21 17:10:29,536 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-10-21 17:10:29,537 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.291.00/i2map_2021.291.00_processing.log /Volumes/AUVCTD/surveys/2021/netcdf