INFO 2025-10-21 16:51:28,639 process.py process_mission():429 [1] commandline = /src/data/process_i2map.py -v --noinput --start_year 2021 --end_year 2021 --start_yd 1 --end_yd 365 --num_cores 1 --clobber INFO 2025-10-21 16:51:28,640 process.py process_mission():449 [1] Processing i2map mission 2021.175.03 by user docker_user on host 5757469a1a5e INFO 2025-10-21 16:51:28,640 process.py download_process():165 [1] Download and processing steps for 2021.175.03 INFO 2025-10-21 16:51:28,640 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/M3/master/i2MAP/2021/06/20210624/2021.175.03 INFO 2025-10-21 16:51:28,641 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/M3/master/i2MAP/2021/06/20210624/2021.175.03 to /data/auv_data/i2map/missionlogs/2021.175.03 INFO 2025-10-21 16:51:30,846 logs2netcdfs.py download_process_logs():779 [1] Processing mission: i2map 2021.175.03 INFO 2025-10-21 16:51:30,846 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.175.03/gps.log (429692 bytes) INFO 2025-10-21 16:51:30,900 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.175.03/navigation.log (143194224 bytes) INFO 2025-10-21 16:51:42,395 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.175.03/parosci.log (40248854 bytes) INFO 2025-10-21 16:51:45,762 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2021.175.03/parosci.log: [13996 94210] INFO 2025-10-21 16:51:45,888 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.175.03/seabird25p.log (91596715 bytes) INFO 2025-10-21 16:51:52,332 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2021.175.03/seabird25p.log: [ 1 272265 411048 602114] INFO 2025-10-21 16:51:52,698 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.175.03/tailCone.log (20223451 bytes) INFO 2025-10-21 16:51:55,189 logs2netcdfs.py download_process_logs():807 [1] Time to process: 24.34 seconds INFO 2025-10-21 16:51:55,189 process.py calibrate():227 [1] Calibration steps for 2021.175.03 INFO 2025-10-21 16:51:55,801 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-10-21 16:51:55,803 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-10-21 16:51:57,014 calibrate.py _nudge_pos():1806 [1] 137: 0.140 -0.0021564 0.0103446 35012 116.70 -2.745 16.425 2021-06-24T18:12:06.214693376 INFO 2025-10-21 16:51:57,637 calibrate.py _nudge_pos():1806 [1] 192: 0.080 -0.0002019 0.0046266 7891 26.30 -1.140 32.598 2021-06-24T18:39:18.412880128 INFO 2025-10-21 16:51:57,925 calibrate.py _nudge_pos():1806 [1] 218: 0.090 -0.0007123 0.0057033 43298 144.32 -0.733 7.323 2021-06-24T21:04:03.017943808 INFO 2025-10-21 16:51:58,153 calibrate.py _nudge_pos():1806 [1] 238: 0.160 0.0021811 0.0042058 5790 19.30 16.793 40.387 2021-06-24T21:23:40.017314048 INFO 2025-10-21 16:51:59,316 calibrate.py _nudge_pos():1806 [1] 338: 0.080 0.0009139 0.0036557 4811 16.03 8.469 42.250 2021-06-24T21:41:21.214617088 INFO 2025-10-21 16:52:04,047 calibrate.py _nudge_pos():1806 [1] 745: 0.180 0.0008599 0.0042544 5770 19.23 6.643 40.995 2021-06-24T22:07:21.217749248 INFO 2025-10-21 16:52:05,870 calibrate.py _nudge_pos():1806 [1] 904: 0.100 0.0045460 0.0161819 36928 123.09 5.486 24.360 2021-06-25T00:13:04.820977152 INFO 2025-10-21 16:52:07,282 calibrate.py _nudge_pos():1806 [1] 1026: 0.110 -0.0007369 0.0075916 10701 35.67 -3.069 39.441 2021-06-25T00:50:46.016074752 INFO 2025-10-21 16:52:08,540 calibrate.py _nudge_pos():1806 [1] 1133: 0.130 0.0005476 0.0072539 45348 151.16 0.538 8.892 2021-06-25T03:23:41.617502976 INFO 2025-10-21 16:52:09,129 calibrate.py _nudge_pos():1806 [1] 1182: 0.020 -0.0001039 0.0035150 6336 21.12 -0.731 30.844 2021-06-25T03:45:36.817405696 INFO 2025-10-21 16:52:09,458 calibrate.py _nudge_pos():1806 [1] 1209: 0.090 -0.0007116 0.0023412 3985 13.28 -7.961 32.667 2021-06-25T03:59:19.821026048 INFO 2025-10-21 16:52:10,782 calibrate.py _nudge_pos():1806 [1] 1321: 0.060 -0.0003277 0.0019533 3036 10.12 -4.813 35.777 2021-06-25T04:11:18.011826432 INFO 2025-10-21 16:52:10,949 calibrate.py _nudge_pos():1806 [1] 1335: 0.160 -0.0000826 0.0000465 120 0.40 -30.931 21.731 2021-06-25T04:11:54.819305216 INFO 2025-10-21 16:52:12,481 calibrate.py _nudge_pos():1806 [1] 1464: 0.180 -0.0002244 0.0001493 365 1.21 -27.477 22.800 2021-06-25T04:15:16.815467264 INFO 2025-10-21 16:52:13,373 calibrate.py _nudge_pos():1806 [1] 1539: 0.020 0.0000331 0.0015111 3006 10.02 0.491 27.955 2021-06-25T04:26:32.019212800 INFO 2025-10-21 16:52:14,786 calibrate.py _nudge_pos():1806 [1] 1655: 0.050 -0.0001966 0.0001509 380 1.26 -23.123 22.132 2021-06-25T04:29:43.016128512 INFO 2025-10-21 16:52:16,007 calibrate.py _nudge_pos():1806 [1] 1751: 0.100 0.0000234 0.0011611 2235 7.45 0.468 28.891 2021-06-25T04:38:45.018998784 INFO 2025-10-21 16:52:17,027 calibrate.py _nudge_pos():1806 [1] 1825: 0.120 -0.0002051 0.0000948 335 1.11 -27.366 15.773 2021-06-25T04:41:06.019339776 INFO 2025-10-21 16:52:17,184 calibrate.py _nudge_pos():1806 [1] 1837: 0.070 0.0000073 0.0000246 20 0.06 17.033 71.870 2021-06-25T04:41:21.018312192 INFO 2025-10-21 16:52:17,359 calibrate.py _nudge_pos():1806 [1] 1851: 0.110 -0.0002062 0.0009826 2045 6.81 -4.496 26.723 2021-06-25T04:48:23.019403264 INFO 2025-10-21 16:52:18,233 calibrate.py _nudge_pos():1806 [1] 1922: 0.150 -0.0002429 0.0011213 2115 7.05 -5.121 29.486 2021-06-25T04:56:36.015630592 INFO 2025-10-21 16:52:18,381 calibrate.py _nudge_pos():1806 [1] 1934: 0.200 -0.0001617 0.0015677 2830 9.43 -2.547 30.805 2021-06-25T05:06:13.016103168 INFO 2025-10-21 16:52:19,404 calibrate.py _nudge_pos():1806 [1] 2017: 0.030 0.0000359 0.0017963 2961 9.87 0.541 33.735 2021-06-25T05:17:27.219917312 INFO 2025-10-21 16:52:43,627 calibrate.py _nudge_pos():1806 [1] 4009: 0.020 0.0005263 0.0019768 4121 13.73 5.693 26.672 2021-06-25T06:04:22.417062912 INFO 2025-10-21 16:52:44,185 calibrate.py _nudge_pos():1806 [1] 4054: 0.080 0.0000481 0.0016598 3300 11.00 0.650 27.968 2021-06-25T06:16:06.418835712 INFO 2025-10-21 16:52:45,140 calibrate.py _nudge_pos():1806 [1] 4132: 0.040 0.0021570 0.0107302 35602 118.67 2.700 16.754 2021-06-25T08:16:04.015766272 INFO 2025-10-21 16:52:45,722 calibrate.py _nudge_pos():1806 [1] 4179: 0.130 0.0012173 0.0019971 7695 25.65 7.052 14.429 2021-06-25T08:42:29.017186304 INFO 2025-10-21 16:52:47,041 calibrate.py _nudge_pos():1806 [1] 4286: 0.170 0.0033687 0.0049783 43493 144.97 3.452 6.363 2021-06-25T11:09:13.614030080 INFO 2025-10-21 16:52:48,492 calibrate.py _nudge_pos():1806 [1] 4400: 0.070 0.0003548 0.0007024 4586 15.28 3.449 8.516 2021-06-25T11:26:23.813456896 INFO 2025-10-21 16:52:52,288 calibrate.py _nudge_pos():1806 [1] 4704: 0.150 -0.0000953 0.0008316 4320 14.40 -0.983 10.703 2021-06-25T11:45:50.813511680 INFO 2025-10-21 16:52:54,033 calibrate.py _nudge_pos():1806 [1] 4845: 0.050 -0.0001337 0.0005300 3136 10.45 -1.902 9.397 2021-06-25T11:58:38.020954368 INFO 2025-10-21 16:52:56,621 calibrate.py _nudge_pos():1806 [1] 5050: 0.140 -0.0002120 0.0055345 37802 126.00 -0.250 8.139 2021-06-25T14:08:02.419056640 INFO 2025-10-21 16:52:57,241 calibrate.py _nudge_pos():1806 [1] 5099: 0.150 0.0000596 0.0000507 20 0.06 139.927 148.401 2021-06-25T14:08:54.415494656 INFO 2025-10-21 16:52:57,280 calibrate.py _nudge_pos():1806 [1] 5102: 0.020 -0.0013416 0.0004829 4946 16.48 -12.093 5.429 2021-06-25T14:25:25.617592576 INFO 2025-10-21 16:53:05,652 calibrate.py _nudge_pos():1806 [1] 5767: 0.010 -0.0003407 0.0007800 9796 32.65 -1.550 4.427 2021-06-25T15:09:08.817891072 INFO 2025-10-21 16:53:06,761 calibrate.py _nudge_pos():1806 [1] 5855: 0.140 -0.0000292 0.0002625 7605 25.35 -0.171 1.919 2021-06-25T15:35:56.817735680 INFO 2025-10-21 16:53:08,039 calibrate.py _nudge_pos():1862 [1] 5917: - - - 1 0.00 - - INFO 2025-10-21 16:53:08,039 calibrate.py _nudge_pos():1868 [1] Points in final series = 420879 INFO 2025-10-21 16:53:59,352 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 143 on port side INFO 2025-10-21 16:53:59,354 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "143" INFO 2025-10-21 16:53:59,607 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2011_June 2012_Oct 2013-Dec 2013_July 2015-Oct 2017_Mar 2020_Feb 2023_Jan 2024_Jan WARNING 2025-10-21 16:53:59,613 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2011_June INFO 2025-10-21 16:53:59,613 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 16:53:59,620 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2012_Oct INFO 2025-10-21 16:53:59,620 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 16:53:59,626 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013-Dec INFO 2025-10-21 16:53:59,626 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 16:53:59,631 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July INFO 2025-10-21 16:53:59,632 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 16:53:59,637 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2015-Oct INFO 2025-10-21 16:53:59,638 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 16:53:59,643 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2017_Mar INFO 2025-10-21 16:53:59,644 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 16:53:59,649 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2020_Feb INFO 2025-10-21 16:53:59,649 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 16:53:59,654 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2023_Jan INFO 2025-10-21 16:53:59,654 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 16:53:59,660 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2024_Jan INFO 2025-10-21 16:53:59,660 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 16:53:59,667 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July/Oxygen_SBE43_0143.XML has CalibrationDate 2013-07-17 00:00:00+00:00 INFO 2025-10-21 16:53:59,668 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July/Oxygen_SBE43_0143.XML is just before 2021.175.03 with mission_start=2021-06-24T16:13:31.462087424 INFO 2025-10-21 16:54:11,854 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_port: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July/Oxygen_SBE43_0143.XML file: {'Soc': 0.42815, 'offset': -0.4829, 'A': -0.0031081, 'B': 0.0001985, 'C': -3.3814e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.28, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 16:54:11,862 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 3968 on stbd side INFO 2025-10-21 16:54:11,862 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "3968" INFO 2025-10-21 16:54:12,048 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2020_Jul 2025_Jan WARNING 2025-10-21 16:54:12,053 calibrate.py _cal_date_xml_files():1081 [1] Found 3 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul INFO 2025-10-21 16:54:12,053 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 16:54:12,057 calibrate.py _cal_date_xml_files():1081 [1] Found 3 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2025_Jan INFO 2025-10-21 16:54:12,057 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 16:54:12,065 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml has CalibrationDate 2020-06-16 00:00:00+00:00 INFO 2025-10-21 16:54:12,065 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml is just before 2021.175.03 with mission_start=2021-06-24T16:13:31.462087424 INFO 2025-10-21 16:54:24,124 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_stbd: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml file: {'Soc': 0.43332, 'offset': -0.5106, 'A': -0.0037655, 'B': 0.00018802, 'C': -3.038e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.54, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 16:54:40,797 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 9 seconds, d_end_time_diff: 0 seconds INFO 2025-10-21 16:54:45,597 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 9 seconds, d_end_time_diff: 0 seconds INFO 2025-10-21 16:54:45,606 calibrate.py _ctd_process():2919 [1] Performing range checking of ['seabird25p_salinity'] in 2021.175.03/seabird25p.nc WARNING 2025-10-21 16:54:45,609 calibrate.py _range_qc_combined_nc():890 [1] More than 500 (1581) seabird25p_salinity values found outside of range. This may indicate a problem with the seabird25p data. INFO 2025-10-21 16:54:45,609 calibrate.py _range_qc_combined_nc():898 [1] Setting 1581 seabird25p_salinity values to NaN INFO 2025-10-21 16:54:45,609 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('seabird25p_salinity', Range(min=30, max=40))] INFO 2025-10-21 16:54:45,609 calibrate.py _range_qc_combined_nc():936 [1] Done range checking seabird25p INFO 2025-10-21 16:54:45,930 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/i2map/missionnetcdfs/2021.175.03/i2map_2021.175.03_cal.nc INFO 2025-10-21 16:55:45,267 calibrate.py write_netcdf():3512 [1] Data variables written: depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_par, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_propRpm, tailcone_time, time INFO 2025-10-21 16:55:45,272 process.py align():251 [1] Alignment steps for 2021.175.03 INFO 2025-10-21 16:55:45,314 align.py process_cal():139 [1] Processing i2map_2021.175.03_cal.nc from /data/auv_data/i2map/missionnetcdfs/2021.175.03 INFO 2025-10-21 16:55:45,424 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 16:55:45,435 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 16:55:45,701 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 16:55:45,715 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 16:55:45,981 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 16:55:46,000 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 16:55:46,158 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-10-21 16:55:46,158 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-10-21 16:55:46,262 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 16:55:46,276 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 16:55:46,565 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.175.03_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:55:46,587 align.py process_cal():249 [1] seabird25p_temperature: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:55:46,965 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.175.03_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:55:46,990 align.py process_cal():249 [1] seabird25p_conductivity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:55:47,364 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.175.03_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:55:47,388 align.py process_cal():249 [1] seabird25p_salinity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:55:47,766 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.175.03_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:55:47,789 align.py process_cal():249 [1] seabird25p_temperature_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:55:48,172 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.175.03_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:55:48,193 align.py process_cal():249 [1] seabird25p_conductivity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:55:48,568 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.175.03_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:55:48,591 align.py process_cal():249 [1] seabird25p_salinity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:55:48,967 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.175.03_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:55:48,990 align.py process_cal():249 [1] seabird25p_dissolvedO2_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:55:49,365 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.175.03_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:55:49,388 align.py process_cal():249 [1] seabird25p_oxygen_mll_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:55:49,762 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.175.03_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:55:49,784 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:55:50,158 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.175.03_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:55:50,186 align.py process_cal():249 [1] seabird25p_dissolvedO2_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:55:50,560 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.175.03_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:55:50,580 align.py process_cal():249 [1] seabird25p_oxygen_mll_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:55:50,954 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.175.03_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:55:50,975 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:55:51,352 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.175.03_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:55:51,374 align.py process_cal():249 [1] seabird25p_beam_transmittance: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:55:51,745 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.175.03_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:55:51,764 align.py process_cal():249 [1] seabird25p_depth: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:55:52,144 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.175.03_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:55:52,172 align.py process_cal():249 [1] seabird25p_par: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:55:52,593 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 16:55:52,763 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/i2map/missionnetcdfs/2021.175.03/i2map_2021.175.03_align.nc INFO 2025-10-21 16:55:52,920 align.py write_netcdf():342 [1] Data variables written: navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_latitude, seabird25p_longitude, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_par, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-10-21 16:55:52,923 process.py resample():273 [1] Resampling steps for 2021.175.03 INFO 2025-10-21 16:55:52,923 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-10-21 16:55:52,951 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2021.175.03/i2map_2021.175.03_align.nc mission netCDF file INFO 2025-10-21 16:55:52,961 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2021.175.03/i2map_2021.175.03_align.nc mission netCDF file INFO 2025-10-21 16:55:52,964 resample.py get_mission_start_end():1145 [1] navigation: 2021-06-24T16:13:46.831034368 to 2021-06-25T15:37:37.020871168 (0 days 00:00:00.039997440 before mission_end) INFO 2025-10-21 16:55:52,969 resample.py get_mission_start_end():1145 [1] seabird25p: 2021-06-24T16:13:31.462087424 to 2021-06-25T15:37:37.060868608 (0 days 00:00:00 before mission_end) INFO 2025-10-21 16:55:52,974 resample.py get_mission_start_end():1145 [1] tailcone : 2021-06-24T16:13:14.173271552 to 2021-06-25T15:37:36.970874624 (0 days 00:00:00.089993984 before mission_end) INFO 2025-10-21 16:55:52,975 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2021.175.03/i2map_2021.175.03_align.nc mission netCDF file INFO 2025-10-21 16:55:52,975 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-10-21 16:55:54,081 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-10-21 16:55:54,213 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-10-21 16:55:54,341 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-10-21 16:55:54,467 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-10-21 16:55:54,659 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature with frequency 1S following 3 point median filter INFO 2025-10-21 16:55:54,855 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity with frequency 1S following 3 point median filter INFO 2025-10-21 16:55:55,073 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity with frequency 1S following 3 point median filter INFO 2025-10-21 16:55:55,270 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 16:55:55,473 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 16:55:55,679 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 16:55:55,890 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_port with frequency 1S following 3 point median filter INFO 2025-10-21 16:55:56,106 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_port with frequency 1S following 3 point median filter INFO 2025-10-21 16:55:56,323 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_port with frequency 1S following 3 point median filter INFO 2025-10-21 16:55:56,540 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 16:55:56,756 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 16:55:57,013 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 16:55:57,236 resample.py resample_variable():1031 [1] Resampling seabird25p_beam_transmittance with frequency 1S following 3 point median filter INFO 2025-10-21 16:55:57,463 resample.py resample_variable():1031 [1] Resampling seabird25p_par with frequency 1S following 3 point median filter INFO 2025-10-21 16:55:57,609 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-10-21 16:55:58,140 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/i2map/missionnetcdfs/2021.175.03/i2map_2021.175.03_1S.nc INFO 2025-10-21 16:55:58,144 process.py archive():337 [1] Archiving steps for 2021.175.03 INFO 2025-10-21 16:55:58,144 process.py archive():347 [1] nc_file_base = /data/auv_data/i2map/missionnetcdfs/2021.175.03/i2map_2021.175.03, BASE_PATH = /data/auv_data INFO 2025-10-21 16:55:58,146 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/i2map/missionnetcdfs/2021.175.03/i2map_2021.175.03 files to /Volumes/AUVCTD/surveys/2021/netcdf INFO 2025-10-21 16:55:58,147 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2021/netcdf/i2map_2021.175.03_1S.nc INFO 2025-10-21 16:55:58,190 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.175.03/i2map_2021.175.03_1S.nc /Volumes/AUVCTD/surveys/2021/netcdf done. INFO 2025-10-21 16:55:58,191 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2021/netcdf/i2map_2021.175.03_cal.nc INFO 2025-10-21 16:55:58,541 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.175.03/i2map_2021.175.03_cal.nc /Volumes/AUVCTD/surveys/2021/netcdf done. INFO 2025-10-21 16:55:58,543 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2021/netcdf/i2map_2021.175.03_align.nc INFO 2025-10-21 16:55:58,874 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.175.03/i2map_2021.175.03_align.nc /Volumes/AUVCTD/surveys/2021/netcdf done. INFO 2025-10-21 16:55:58,885 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.175.03/gps.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021175/2021.175.03 done. INFO 2025-10-21 16:55:59,222 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.175.03/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021175/2021.175.03 done. INFO 2025-10-21 16:55:59,343 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.175.03/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021175/2021.175.03 done. INFO 2025-10-21 16:55:59,568 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.175.03/seabird25p.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021175/2021.175.03 done. INFO 2025-10-21 16:55:59,640 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.175.03/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021175/2021.175.03 done. INFO 2025-10-21 16:55:59,641 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-10-21 16:55:59,641 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.175.03/i2map_2021.175.03_processing.log /Volumes/AUVCTD/surveys/2021/netcdf