INFO 2025-10-21 16:47:04,697 process.py process_mission():429 [1] commandline = /src/data/process_i2map.py -v --noinput --start_year 2021 --end_year 2021 --start_yd 1 --end_yd 365 --num_cores 1 --clobber INFO 2025-10-21 16:47:04,697 process.py process_mission():449 [1] Processing i2map mission 2021.132.01 by user docker_user on host 5757469a1a5e INFO 2025-10-21 16:47:04,697 process.py download_process():165 [1] Download and processing steps for 2021.132.01 INFO 2025-10-21 16:47:04,698 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/M3/master/i2MAP/2021/05/20210512/2021.132.01 INFO 2025-10-21 16:47:04,698 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/M3/master/i2MAP/2021/05/20210512/2021.132.01 to /data/auv_data/i2map/missionlogs/2021.132.01 INFO 2025-10-21 16:47:06,864 logs2netcdfs.py download_process_logs():779 [1] Processing mission: i2map 2021.132.01 INFO 2025-10-21 16:47:06,864 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.132.01/gps.log (379940 bytes) INFO 2025-10-21 16:47:06,913 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.132.01/navigation.log (144745304 bytes) INFO 2025-10-21 16:47:18,542 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.132.01/parosci.log (40685030 bytes) INFO 2025-10-21 16:47:21,951 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2021.132.01/parosci.log: [779607] INFO 2025-10-21 16:47:22,076 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.132.01/seabird25p.log (92555651 bytes) INFO 2025-10-21 16:47:28,559 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2021.132.01/seabird25p.log: [ 1 513688] INFO 2025-10-21 16:47:28,931 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.132.01/tailCone.log (20442571 bytes) INFO 2025-10-21 16:47:31,429 logs2netcdfs.py download_process_logs():807 [1] Time to process: 24.56 seconds INFO 2025-10-21 16:47:31,429 process.py calibrate():227 [1] Calibration steps for 2021.132.01 INFO 2025-10-21 16:47:32,047 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-10-21 16:47:32,050 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-10-21 16:47:32,975 calibrate.py _nudge_pos():1806 [1] 114: 0.080 0.0035521 -0.0010310 35028 116.76 4.520 -1.636 2021-05-12T17:52:09.439946496 INFO 2025-10-21 16:47:34,136 calibrate.py _nudge_pos():1806 [1] 219: 0.120 0.0006512 0.0000729 2425 8.08 11.975 1.672 2021-05-12T18:02:00.439460352 INFO 2025-10-21 16:47:35,328 calibrate.py _nudge_pos():1806 [1] 328: 0.130 0.0065122 0.0031971 41642 138.81 6.970 4.268 2021-05-12T20:22:37.041513472 INFO 2025-10-21 16:47:36,335 calibrate.py _nudge_pos():1806 [1] 418: 0.170 0.0005694 -0.0002787 2920 9.73 8.695 -5.307 2021-05-12T20:33:50.035410176 INFO 2025-10-21 16:47:37,836 calibrate.py _nudge_pos():1806 [1] 553: 0.020 0.0005011 0.0001026 2726 9.08 8.196 2.092 2021-05-12T20:45:09.238881536 INFO 2025-10-21 16:47:39,270 calibrate.py _nudge_pos():1806 [1] 682: 0.080 0.0005455 0.0000536 2560 8.53 9.501 1.164 2021-05-12T20:55:49.235038720 INFO 2025-10-21 16:47:39,608 calibrate.py _nudge_pos():1806 [1] 712: 0.050 0.0000724 -0.0000725 60 0.20 54.709 -68.342 2021-05-12T20:56:30.242229760 INFO 2025-10-21 16:47:39,882 calibrate.py _nudge_pos():1806 [1] 736: 0.190 0.0060508 0.0045014 35257 117.52 7.649 7.098 2021-05-12T22:54:24.637600512 INFO 2025-10-21 16:47:40,072 calibrate.py _nudge_pos():1806 [1] 752: 0.190 0.0001539 -0.0000116 110 0.36 62.939 -5.892 2021-05-12T22:55:01.635065856 INFO 2025-10-21 16:47:40,147 calibrate.py _nudge_pos():1806 [1] 758: 0.060 0.0011722 0.0003605 4831 16.10 10.817 4.149 2021-05-12T23:11:12.838533888 INFO 2025-10-21 16:47:42,608 calibrate.py _nudge_pos():1806 [1] 969: 0.110 0.0021904 0.0024821 42773 142.57 2.283 3.226 2021-05-13T01:37:17.438117632 INFO 2025-10-21 16:47:44,231 calibrate.py _nudge_pos():1806 [1] 1107: 0.150 0.0011552 -0.0002889 3429 11.43 15.015 -4.684 2021-05-13T01:51:00.441738240 INFO 2025-10-21 16:47:45,547 calibrate.py _nudge_pos():1806 [1] 1217: 0.030 0.0009840 0.0001048 3076 10.25 14.264 1.894 2021-05-13T02:03:04.642126848 INFO 2025-10-21 16:47:46,968 calibrate.py _nudge_pos():1806 [1] 1335: 0.050 0.0010767 0.0000858 2880 9.60 16.670 1.657 2021-05-13T02:14:37.644653056 INFO 2025-10-21 16:47:47,306 calibrate.py _nudge_pos():1806 [1] 1363: 0.080 0.0000373 -0.0000469 100 0.33 16.793 -26.331 2021-05-13T02:15:24.641433600 INFO 2025-10-21 16:47:47,435 calibrate.py _nudge_pos():1806 [1] 1374: 0.140 0.0054384 0.0059335 18961 63.20 12.784 17.397 2021-05-13T03:18:46.840965120 INFO 2025-10-21 16:47:48,276 calibrate.py _nudge_pos():1806 [1] 1445: 0.150 0.0053705 0.0008845 14536 48.45 16.469 3.383 2021-05-13T04:08:24.037012992 INFO 2025-10-21 16:47:49,870 calibrate.py _nudge_pos():1806 [1] 1579: 0.170 0.0000468 -0.0001616 410 1.36 5.104 -21.957 2021-05-13T04:11:59.042284288 INFO 2025-10-21 16:47:51,239 calibrate.py _nudge_pos():1806 [1] 1692: 0.040 0.0009207 0.0002673 3535 11.78 11.613 4.205 2021-05-13T04:25:38.236165632 INFO 2025-10-21 16:47:52,119 calibrate.py _nudge_pos():1806 [1] 1765: 0.040 0.0000008 -0.0002484 365 1.21 0.100 -37.932 2021-05-13T04:28:03.236232448 INFO 2025-10-21 16:47:53,795 calibrate.py _nudge_pos():1806 [1] 1904: 0.090 0.0007618 0.0002321 2785 9.28 12.197 4.635 2021-05-13T04:39:38.238621440 INFO 2025-10-21 16:47:54,819 calibrate.py _nudge_pos():1806 [1] 1991: 0.150 0.0005726 -0.0001073 1830 6.10 13.953 -3.262 2021-05-13T04:47:10.237657344 INFO 2025-10-21 16:47:55,161 calibrate.py _nudge_pos():1806 [1] 2020: 0.140 0.0005818 -0.0000099 2325 7.75 11.157 -0.236 2021-05-13T04:55:23.243884032 INFO 2025-10-21 16:47:56,004 calibrate.py _nudge_pos():1806 [1] 2091: 0.010 0.0004963 -0.0000164 2266 7.55 9.766 -0.403 2021-05-13T05:04:06.438042880 INFO 2025-10-21 16:48:10,340 calibrate.py _nudge_pos():1806 [1] 3294: 0.150 0.0009476 0.0000559 2295 7.65 18.411 1.355 2021-05-13T05:31:47.444256256 INFO 2025-10-21 16:48:10,557 calibrate.py _nudge_pos():1806 [1] 3312: 0.150 0.0005940 0.0000069 2670 8.90 9.920 0.143 2021-05-13T05:40:58.436510464 INFO 2025-10-21 16:48:10,878 calibrate.py _nudge_pos():1806 [1] 3339: 0.160 -0.0000277 0.0000584 45 0.15 -28.045 73.816 2021-05-13T05:41:33.444112640 INFO 2025-10-21 16:48:11,278 calibrate.py _nudge_pos():1806 [1] 3372: 0.070 0.0033457 0.0025271 35937 119.79 4.150 3.909 2021-05-13T07:41:53.039536128 INFO 2025-10-21 16:48:11,617 calibrate.py _nudge_pos():1806 [1] 3400: 0.090 0.0000058 -0.0000095 40 0.13 6.652 -13.605 2021-05-13T07:42:28.037138688 INFO 2025-10-21 16:48:11,873 calibrate.py _nudge_pos():1806 [1] 3421: 0.130 0.0003630 -0.0003966 3215 10.71 5.034 -6.860 2021-05-13T07:53:32.041651456 INFO 2025-10-21 16:48:11,995 calibrate.py _nudge_pos():1806 [1] 3431: 0.010 0.0058756 0.0021847 43268 144.22 6.053 2.807 2021-05-13T10:17:54.838209280 INFO 2025-10-21 16:48:12,859 calibrate.py _nudge_pos():1806 [1] 3501: 0.020 0.0004428 -0.0003759 2536 8.45 7.785 -8.243 2021-05-13T10:27:30.838750464 INFO 2025-10-21 16:48:13,206 calibrate.py _nudge_pos():1806 [1] 3529: 0.040 0.0006793 -0.0000908 2580 8.60 11.741 -1.957 2021-05-13T10:36:33.841552384 INFO 2025-10-21 16:48:14,473 calibrate.py _nudge_pos():1806 [1] 3631: 0.100 0.0005955 -0.0001548 2625 8.75 10.115 -3.279 2021-05-13T10:46:59.838668288 INFO 2025-10-21 16:48:15,192 calibrate.py _nudge_pos():1806 [1] 3689: 0.030 0.0074511 0.0006367 36412 121.37 9.121 0.972 2021-05-13T12:49:19.435871488 INFO 2025-10-21 16:48:15,912 calibrate.py _nudge_pos():1806 [1] 3746: 0.200 -0.0000061 0.0000045 14 0.04 -21.058 19.056 2021-05-13T12:50:18.241843200 INFO 2025-10-21 16:48:15,976 calibrate.py _nudge_pos():1806 [1] 3751: 0.080 0.0004434 -0.0002993 4145 13.81 4.769 -4.015 2021-05-13T13:04:11.444764928 INFO 2025-10-21 16:48:16,454 calibrate.py _nudge_pos():1806 [1] 3789: 0.030 0.0052388 0.0009621 37148 123.82 6.286 1.440 2021-05-13T15:08:38.043267840 INFO 2025-10-21 16:48:35,198 calibrate.py _nudge_pos():1862 [1] 5226: - - - 1 0.00 - - INFO 2025-10-21 16:48:35,199 calibrate.py _nudge_pos():1868 [1] Points in final series = 425480 INFO 2025-10-21 16:49:26,917 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 143 on port side INFO 2025-10-21 16:49:26,919 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "143" INFO 2025-10-21 16:49:27,142 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2011_June 2012_Oct 2013-Dec 2013_July 2015-Oct 2017_Mar 2020_Feb 2023_Jan 2024_Jan WARNING 2025-10-21 16:49:27,148 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2011_June INFO 2025-10-21 16:49:27,148 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 16:49:27,154 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2012_Oct INFO 2025-10-21 16:49:27,154 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 16:49:27,159 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013-Dec INFO 2025-10-21 16:49:27,160 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 16:49:27,165 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July INFO 2025-10-21 16:49:27,165 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 16:49:27,170 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2015-Oct INFO 2025-10-21 16:49:27,170 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 16:49:27,176 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2017_Mar INFO 2025-10-21 16:49:27,176 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 16:49:27,181 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2020_Feb INFO 2025-10-21 16:49:27,181 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 16:49:27,186 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2023_Jan INFO 2025-10-21 16:49:27,186 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 16:49:27,191 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2024_Jan INFO 2025-10-21 16:49:27,191 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 16:49:27,198 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July/Oxygen_SBE43_0143.XML has CalibrationDate 2013-07-17 00:00:00+00:00 INFO 2025-10-21 16:49:27,198 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July/Oxygen_SBE43_0143.XML is just before 2021.132.01 with mission_start=2021-05-12T15:54:25.603852544 INFO 2025-10-21 16:49:39,191 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_port: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July/Oxygen_SBE43_0143.XML file: {'Soc': 0.42815, 'offset': -0.4829, 'A': -0.0031081, 'B': 0.0001985, 'C': -3.3814e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.28, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 16:49:39,199 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 3968 on stbd side INFO 2025-10-21 16:49:39,199 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "3968" INFO 2025-10-21 16:49:39,381 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2020_Jul 2025_Jan WARNING 2025-10-21 16:49:39,385 calibrate.py _cal_date_xml_files():1081 [1] Found 3 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul INFO 2025-10-21 16:49:39,385 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 16:49:39,389 calibrate.py _cal_date_xml_files():1081 [1] Found 3 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2025_Jan INFO 2025-10-21 16:49:39,389 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 16:49:39,396 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml has CalibrationDate 2020-06-16 00:00:00+00:00 INFO 2025-10-21 16:49:39,396 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml is just before 2021.132.01 with mission_start=2021-05-12T15:54:25.603852544 INFO 2025-10-21 16:49:51,652 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_stbd: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml file: {'Soc': 0.43332, 'offset': -0.5106, 'A': -0.0037655, 'B': 0.00018802, 'C': -3.038e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.54, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 16:50:08,334 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 40 seconds, d_end_time_diff: 0 seconds INFO 2025-10-21 16:50:13,142 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 40 seconds, d_end_time_diff: 0 seconds INFO 2025-10-21 16:50:13,151 calibrate.py _ctd_process():2919 [1] Performing range checking of ['seabird25p_salinity'] in 2021.132.01/seabird25p.nc INFO 2025-10-21 16:50:13,154 calibrate.py _range_qc_combined_nc():898 [1] Setting 244 seabird25p_salinity values to NaN INFO 2025-10-21 16:50:13,155 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('seabird25p_salinity', Range(min=30, max=40))] INFO 2025-10-21 16:50:13,155 calibrate.py _range_qc_combined_nc():936 [1] Done range checking seabird25p INFO 2025-10-21 16:50:13,478 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/i2map/missionnetcdfs/2021.132.01/i2map_2021.132.01_cal.nc INFO 2025-10-21 16:51:13,613 calibrate.py write_netcdf():3512 [1] Data variables written: depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_par, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_propRpm, tailcone_time, time INFO 2025-10-21 16:51:13,617 process.py align():251 [1] Alignment steps for 2021.132.01 INFO 2025-10-21 16:51:13,661 align.py process_cal():139 [1] Processing i2map_2021.132.01_cal.nc from /data/auv_data/i2map/missionnetcdfs/2021.132.01 INFO 2025-10-21 16:51:13,772 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 16:51:13,783 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 16:51:14,050 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 16:51:14,064 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 16:51:14,329 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 16:51:14,348 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 16:51:14,522 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-10-21 16:51:14,522 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-10-21 16:51:14,627 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 16:51:14,642 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 16:51:14,942 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.132.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:51:14,968 align.py process_cal():249 [1] seabird25p_temperature: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:51:15,349 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.132.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:51:15,375 align.py process_cal():249 [1] seabird25p_conductivity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:51:15,766 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.132.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:51:15,792 align.py process_cal():249 [1] seabird25p_salinity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:51:16,178 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.132.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:51:16,205 align.py process_cal():249 [1] seabird25p_temperature_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:51:16,610 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.132.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:51:16,637 align.py process_cal():249 [1] seabird25p_conductivity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:51:17,026 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.132.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:51:17,051 align.py process_cal():249 [1] seabird25p_salinity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:51:17,435 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.132.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:51:17,458 align.py process_cal():249 [1] seabird25p_dissolvedO2_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:51:17,833 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.132.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:51:17,856 align.py process_cal():249 [1] seabird25p_oxygen_mll_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:51:18,236 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.132.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:51:18,259 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:51:18,634 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.132.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:51:18,664 align.py process_cal():249 [1] seabird25p_dissolvedO2_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:51:19,037 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.132.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:51:19,059 align.py process_cal():249 [1] seabird25p_oxygen_mll_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:51:19,432 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.132.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:51:19,455 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:51:19,833 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.132.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:51:19,855 align.py process_cal():249 [1] seabird25p_beam_transmittance: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:51:20,229 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.132.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:51:20,249 align.py process_cal():249 [1] seabird25p_depth: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:51:20,624 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.132.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:51:20,651 align.py process_cal():249 [1] seabird25p_par: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:51:21,066 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 16:51:21,242 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/i2map/missionnetcdfs/2021.132.01/i2map_2021.132.01_align.nc INFO 2025-10-21 16:51:21,402 align.py write_netcdf():342 [1] Data variables written: navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_latitude, seabird25p_longitude, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_par, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-10-21 16:51:21,407 process.py resample():273 [1] Resampling steps for 2021.132.01 INFO 2025-10-21 16:51:21,408 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-10-21 16:51:21,435 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2021.132.01/i2map_2021.132.01_align.nc mission netCDF file INFO 2025-10-21 16:51:21,444 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2021.132.01/i2map_2021.132.01_align.nc mission netCDF file INFO 2025-10-21 16:51:21,447 resample.py get_mission_start_end():1145 [1] navigation: 2021-05-12T15:54:10.054917632 to 2021-05-13T15:33:13.242209792 (0 days 00:00:00.019998464 before mission_end) INFO 2025-10-21 16:51:21,451 resample.py get_mission_start_end():1145 [1] seabird25p: 2021-05-12T15:54:25.603852544 to 2021-05-13T15:33:13.252208896 (0 days 00:00:00.009999360 before mission_end) INFO 2025-10-21 16:51:21,456 resample.py get_mission_start_end():1145 [1] tailcone : 2021-05-12T15:53:38.267095040 to 2021-05-13T15:33:13.262208256 (0 days 00:00:00 before mission_end) INFO 2025-10-21 16:51:21,457 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2021.132.01/i2map_2021.132.01_align.nc mission netCDF file INFO 2025-10-21 16:51:21,458 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-10-21 16:51:22,615 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-10-21 16:51:22,752 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-10-21 16:51:22,887 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-10-21 16:51:23,017 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-10-21 16:51:23,220 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature with frequency 1S following 3 point median filter INFO 2025-10-21 16:51:23,439 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity with frequency 1S following 3 point median filter INFO 2025-10-21 16:51:23,673 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity with frequency 1S following 3 point median filter INFO 2025-10-21 16:51:23,890 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 16:51:24,106 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 16:51:24,325 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 16:51:24,540 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_port with frequency 1S following 3 point median filter INFO 2025-10-21 16:51:24,756 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_port with frequency 1S following 3 point median filter INFO 2025-10-21 16:51:24,974 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_port with frequency 1S following 3 point median filter INFO 2025-10-21 16:51:25,191 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 16:51:25,406 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 16:51:25,622 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 16:51:25,839 resample.py resample_variable():1031 [1] Resampling seabird25p_beam_transmittance with frequency 1S following 3 point median filter INFO 2025-10-21 16:51:26,051 resample.py resample_variable():1031 [1] Resampling seabird25p_par with frequency 1S following 3 point median filter INFO 2025-10-21 16:51:26,193 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-10-21 16:51:26,729 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/i2map/missionnetcdfs/2021.132.01/i2map_2021.132.01_1S.nc INFO 2025-10-21 16:51:26,735 process.py archive():337 [1] Archiving steps for 2021.132.01 INFO 2025-10-21 16:51:26,735 process.py archive():347 [1] nc_file_base = /data/auv_data/i2map/missionnetcdfs/2021.132.01/i2map_2021.132.01, BASE_PATH = /data/auv_data INFO 2025-10-21 16:51:26,737 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/i2map/missionnetcdfs/2021.132.01/i2map_2021.132.01 files to /Volumes/AUVCTD/surveys/2021/netcdf INFO 2025-10-21 16:51:26,738 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2021/netcdf/i2map_2021.132.01_1S.nc INFO 2025-10-21 16:51:26,784 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.132.01/i2map_2021.132.01_1S.nc /Volumes/AUVCTD/surveys/2021/netcdf done. INFO 2025-10-21 16:51:26,785 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2021/netcdf/i2map_2021.132.01_cal.nc INFO 2025-10-21 16:51:27,134 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.132.01/i2map_2021.132.01_cal.nc /Volumes/AUVCTD/surveys/2021/netcdf done. INFO 2025-10-21 16:51:27,135 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2021/netcdf/i2map_2021.132.01_align.nc INFO 2025-10-21 16:51:27,442 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.132.01/i2map_2021.132.01_align.nc /Volumes/AUVCTD/surveys/2021/netcdf done. INFO 2025-10-21 16:51:27,453 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.132.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021132/2021.132.01 done. INFO 2025-10-21 16:51:27,786 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.132.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021132/2021.132.01 done. INFO 2025-10-21 16:51:27,913 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.132.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021132/2021.132.01 done. INFO 2025-10-21 16:51:28,148 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.132.01/seabird25p.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021132/2021.132.01 done. INFO 2025-10-21 16:51:28,223 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.132.01/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021132/2021.132.01 done. INFO 2025-10-21 16:51:28,223 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-10-21 16:51:28,224 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.132.01/i2map_2021.132.01_processing.log /Volumes/AUVCTD/surveys/2021/netcdf