INFO 2025-10-21 16:40:25,048 process.py process_mission():429 [1] commandline = /src/data/process_i2map.py -v --noinput --start_year 2021 --end_year 2021 --start_yd 1 --end_yd 365 --num_cores 1 --clobber INFO 2025-10-21 16:40:25,048 process.py process_mission():449 [1] Processing i2map mission 2021.089.00 by user docker_user on host 5757469a1a5e INFO 2025-10-21 16:40:25,048 process.py download_process():165 [1] Download and processing steps for 2021.089.00 INFO 2025-10-21 16:40:25,049 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/M3/master/i2MAP/2021/03/20210330/2021.089.00 INFO 2025-10-21 16:40:25,050 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/M3/master/i2MAP/2021/03/20210330/2021.089.00 to /data/auv_data/i2map/missionlogs/2021.089.00 INFO 2025-10-21 16:40:28,887 logs2netcdfs.py download_process_logs():779 [1] Processing mission: i2map 2021.089.00 INFO 2025-10-21 16:40:28,888 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.089.00/gps.log (1025348 bytes) INFO 2025-10-21 16:40:29,027 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.089.00/navigation.log (169044764 bytes) INFO 2025-10-21 16:40:43,134 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.089.00/parosci.log (47512790 bytes) INFO 2025-10-21 16:40:47,232 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.089.00/seabird25p.log (108130915 bytes) INFO 2025-10-21 16:40:54,875 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2021.089.00/seabird25p.log: [ 1 500436] INFO 2025-10-21 16:40:55,275 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.089.00/tailCone.log (23872411 bytes) INFO 2025-10-21 16:40:58,211 logs2netcdfs.py download_process_logs():807 [1] Time to process: 29.32 seconds INFO 2025-10-21 16:40:58,211 process.py calibrate():227 [1] Calibration steps for 2021.089.00 INFO 2025-10-21 16:40:58,923 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-10-21 16:40:58,925 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-10-21 16:41:04,870 calibrate.py _nudge_pos():1806 [1] 554: 0.100 -0.0054998 0.0046358 38107 127.02 -6.433 6.763 2021-03-30T18:11:46.278032896 INFO 2025-10-21 16:41:05,616 calibrate.py _nudge_pos():1806 [1] 619: 0.150 -0.0009064 0.0010422 5090 16.96 -7.939 11.384 2021-03-30T18:29:48.283910400 INFO 2025-10-21 16:41:08,181 calibrate.py _nudge_pos():1806 [1] 831: 0.030 0.0026976 0.0039381 42864 142.88 2.805 5.107 2021-03-30T20:56:12.082179072 INFO 2025-10-21 16:41:09,673 calibrate.py _nudge_pos():1806 [1] 960: 0.070 -0.0004405 0.0010579 4090 13.63 -4.802 14.382 2021-03-30T21:11:58.077373952 INFO 2025-10-21 16:41:10,595 calibrate.py _nudge_pos():1806 [1] 1039: 0.100 -0.0004345 0.0004875 2795 9.31 -6.931 9.700 2021-03-30T21:22:35.083736064 INFO 2025-10-21 16:41:11,479 calibrate.py _nudge_pos():1806 [1] 1115: 0.160 -0.0003327 0.0005280 2415 8.05 -6.143 12.160 2021-03-30T21:31:53.075511040 INFO 2025-10-21 16:41:12,319 calibrate.py _nudge_pos():1806 [1] 1187: 0.120 -0.0010391 0.0093317 36593 121.97 -1.266 14.177 2021-03-30T23:35:02.679288320 INFO 2025-10-21 16:41:12,593 calibrate.py _nudge_pos():1806 [1] 1210: 0.090 -0.0000041 -0.0000069 25 0.08 -7.590 -16.019 2021-03-30T23:35:29.677438976 INFO 2025-10-21 16:41:14,930 calibrate.py _nudge_pos():1806 [1] 1408: 0.180 0.0003700 0.0014340 6925 23.08 2.382 11.513 2021-03-31T00:01:51.679064320 INFO 2025-10-21 16:41:17,139 calibrate.py _nudge_pos():1806 [1] 1589: 0.070 0.0001083 0.0047009 43908 146.36 0.110 5.952 2021-03-31T02:31:13.485138688 INFO 2025-10-21 16:41:18,059 calibrate.py _nudge_pos():1806 [1] 1665: 0.130 0.0003341 0.0009595 5095 16.98 2.923 10.471 2021-03-31T02:49:27.480194816 INFO 2025-10-21 16:41:18,664 calibrate.py _nudge_pos():1806 [1] 1715: 0.090 -0.0000999 0.0005005 2876 9.58 -1.549 9.677 2021-03-31T02:59:51.677434368 INFO 2025-10-21 16:41:19,017 calibrate.py _nudge_pos():1806 [1] 1744: 0.080 -0.0000773 0.0003913 2411 8.03 -1.429 9.025 2021-03-31T03:08:21.682496512 INFO 2025-10-21 16:41:20,560 calibrate.py _nudge_pos():1806 [1] 1870: 0.170 -0.0003345 0.0028249 8650 28.83 -1.724 18.157 2021-03-31T03:39:16.675420672 INFO 2025-10-21 16:41:21,374 calibrate.py _nudge_pos():1806 [1] 1936: 0.090 -0.0000820 0.0012430 9246 30.82 -0.395 7.474 2021-03-31T04:11:10.884288512 INFO 2025-10-21 16:41:22,833 calibrate.py _nudge_pos():1806 [1] 2055: 0.120 -0.0002580 0.0000589 400 1.33 -28.817 8.210 2021-03-31T04:14:28.880724992 INFO 2025-10-21 16:41:24,049 calibrate.py _nudge_pos():1806 [1] 2155: 0.140 -0.0004129 0.0001595 1985 6.61 -9.276 4.470 2021-03-31T04:22:45.876678400 INFO 2025-10-21 16:41:25,026 calibrate.py _nudge_pos():1806 [1] 2235: 0.190 -0.0001448 0.0000308 385 1.28 -16.806 4.463 2021-03-31T04:25:21.875991552 INFO 2025-10-21 16:41:25,833 calibrate.py _nudge_pos():1806 [1] 2301: 0.190 -0.0003110 -0.0001541 1290 4.30 -10.753 -6.644 2021-03-31T04:30:44.883864064 INFO 2025-10-21 16:41:27,149 calibrate.py _nudge_pos():1806 [1] 2408: 0.020 -0.0003364 0.0001101 1835 6.11 -8.175 3.337 2021-03-31T04:38:38.081447936 INFO 2025-10-21 16:41:27,890 calibrate.py _nudge_pos():1806 [1] 2469: 0.050 -0.0009140 -0.0004096 2505 8.35 -16.270 -9.094 2021-03-31T04:48:01.082879488 INFO 2025-10-21 16:41:28,673 calibrate.py _nudge_pos():1806 [1] 2532: 0.120 -0.0002538 0.0001222 1850 6.16 -6.119 3.675 2021-03-31T04:55:13.083285504 INFO 2025-10-21 16:42:03,150 calibrate.py _nudge_pos():1806 [1] 5343: 0.150 -0.0007511 0.0005606 3375 11.25 -9.922 9.237 2021-03-31T05:53:18.284532992 INFO 2025-10-21 16:42:04,066 calibrate.py _nudge_pos():1806 [1] 5418: 0.180 -0.0003802 0.0003476 2410 8.03 -7.034 8.022 2021-03-31T06:02:34.276444928 INFO 2025-10-21 16:42:05,507 calibrate.py _nudge_pos():1806 [1] 5535: 0.130 -0.0055711 0.0086602 36958 123.19 -6.718 13.026 2021-03-31T08:07:41.882138624 INFO 2025-10-21 16:42:05,683 calibrate.py _nudge_pos():1806 [1] 5549: 0.110 0.0000552 -0.0000081 20 0.06 129.577 -23.557 2021-03-31T08:07:58.880974080 INFO 2025-10-21 16:42:05,721 calibrate.py _nudge_pos():1806 [1] 5552: 0.050 -0.0012984 0.0020883 7426 24.75 -7.794 15.635 2021-03-31T08:32:46.079094272 INFO 2025-10-21 16:42:11,274 calibrate.py _nudge_pos():1806 [1] 5994: 0.160 -0.0009537 0.0042298 45813 152.71 -0.928 5.133 2021-03-31T11:12:49.681202176 INFO 2025-10-21 16:42:12,925 calibrate.py _nudge_pos():1806 [1] 6126: 0.030 0.0025861 0.0017453 5801 19.33 19.873 16.728 2021-03-31T11:34:20.882748928 INFO 2025-10-21 16:42:14,104 calibrate.py _nudge_pos():1806 [1] 6220: 0.150 0.0013234 0.0013123 4250 14.16 13.882 17.169 2021-03-31T11:50:03.878149376 INFO 2025-10-21 16:42:15,258 calibrate.py _nudge_pos():1806 [1] 6312: 0.160 0.0011987 0.0007032 3440 11.46 15.536 11.366 2021-03-31T12:03:02.884783872 INFO 2025-10-21 16:42:15,929 calibrate.py _nudge_pos():1806 [1] 6365: 0.130 0.0068581 0.0091458 39418 131.39 7.754 12.898 2021-03-31T14:15:19.481089536 INFO 2025-10-21 16:42:19,884 calibrate.py _nudge_pos():1806 [1] 6676: 0.090 0.0032157 0.0015178 8686 28.95 16.503 9.715 2021-03-31T14:49:26.680846848 INFO 2025-10-21 16:42:21,165 calibrate.py _nudge_pos():1806 [1] 6777: 0.190 0.0065101 0.0063002 47418 158.06 6.119 7.386 2021-03-31T17:29:10.284325120 INFO 2025-10-21 16:42:21,298 calibrate.py _nudge_pos():1806 [1] 6787: 0.170 0.0000055 -0.0000081 25 0.08 10.135 -18.705 2021-03-31T17:29:25.283297536 INFO 2025-10-21 16:43:58,768 calibrate.py _nudge_pos():1862 [1] 14191: - - - 0 0.00 - - INFO 2025-10-21 16:43:58,768 calibrate.py _nudge_pos():1868 [1] Points in final series = 496630 INFO 2025-10-21 16:44:42,210 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 143 on port side INFO 2025-10-21 16:44:42,213 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "143" INFO 2025-10-21 16:44:42,475 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2011_June 2012_Oct 2013-Dec 2013_July 2015-Oct 2017_Mar 2020_Feb 2023_Jan 2024_Jan WARNING 2025-10-21 16:44:42,481 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2011_June INFO 2025-10-21 16:44:42,482 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 16:44:42,488 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2012_Oct INFO 2025-10-21 16:44:42,488 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 16:44:42,493 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013-Dec INFO 2025-10-21 16:44:42,494 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 16:44:42,499 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July INFO 2025-10-21 16:44:42,499 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 16:44:42,506 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2015-Oct INFO 2025-10-21 16:44:42,506 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 16:44:42,512 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2017_Mar INFO 2025-10-21 16:44:42,512 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 16:44:42,518 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2020_Feb INFO 2025-10-21 16:44:42,518 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 16:44:42,524 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2023_Jan INFO 2025-10-21 16:44:42,524 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 16:44:42,529 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2024_Jan INFO 2025-10-21 16:44:42,529 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 16:44:42,536 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July/Oxygen_SBE43_0143.XML has CalibrationDate 2013-07-17 00:00:00+00:00 INFO 2025-10-21 16:44:42,536 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July/Oxygen_SBE43_0143.XML is just before 2021.089.00 with mission_start=2021-03-30T15:55:53.546533376 INFO 2025-10-21 16:44:56,930 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_port: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July/Oxygen_SBE43_0143.XML file: {'Soc': 0.42815, 'offset': -0.4829, 'A': -0.0031081, 'B': 0.0001985, 'C': -3.3814e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.28, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 16:44:56,939 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 3968 on stbd side INFO 2025-10-21 16:44:56,939 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "3968" INFO 2025-10-21 16:44:57,147 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2020_Jul 2025_Jan WARNING 2025-10-21 16:44:57,153 calibrate.py _cal_date_xml_files():1081 [1] Found 3 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul INFO 2025-10-21 16:44:57,153 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 16:44:57,158 calibrate.py _cal_date_xml_files():1081 [1] Found 3 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2025_Jan INFO 2025-10-21 16:44:57,158 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 16:44:57,165 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml has CalibrationDate 2020-06-16 00:00:00+00:00 INFO 2025-10-21 16:44:57,165 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml is just before 2021.089.00 with mission_start=2021-03-30T15:55:53.546533376 INFO 2025-10-21 16:45:11,324 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_stbd: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml file: {'Soc': 0.43332, 'offset': -0.5106, 'A': -0.0037655, 'B': 0.00018802, 'C': -3.038e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.54, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 16:45:30,962 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 8 seconds, d_end_time_diff: -1 seconds INFO 2025-10-21 16:45:36,700 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 8 seconds, d_end_time_diff: -1 seconds INFO 2025-10-21 16:45:36,714 calibrate.py _ctd_process():2919 [1] Performing range checking of ['seabird25p_salinity'] in 2021.089.00/seabird25p.nc WARNING 2025-10-21 16:45:36,719 calibrate.py _range_qc_combined_nc():890 [1] More than 500 (3935) seabird25p_salinity values found outside of range. This may indicate a problem with the seabird25p data. INFO 2025-10-21 16:45:36,719 calibrate.py _range_qc_combined_nc():898 [1] Setting 3935 seabird25p_salinity values to NaN INFO 2025-10-21 16:45:36,720 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('seabird25p_salinity', Range(min=30, max=40))] INFO 2025-10-21 16:45:36,720 calibrate.py _range_qc_combined_nc():936 [1] Done range checking seabird25p INFO 2025-10-21 16:45:37,122 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/i2map/missionnetcdfs/2021.089.00/i2map_2021.089.00_cal.nc INFO 2025-10-21 16:46:46,695 calibrate.py write_netcdf():3512 [1] Data variables written: depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_par, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_propRpm, tailcone_time, time INFO 2025-10-21 16:46:46,701 process.py align():251 [1] Alignment steps for 2021.089.00 INFO 2025-10-21 16:46:46,751 align.py process_cal():139 [1] Processing i2map_2021.089.00_cal.nc from /data/auv_data/i2map/missionnetcdfs/2021.089.00 INFO 2025-10-21 16:46:46,893 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 16:46:46,906 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 16:46:47,279 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 16:46:47,302 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 16:46:47,610 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 16:46:47,634 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 16:46:47,833 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-10-21 16:46:47,833 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-10-21 16:46:47,978 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 16:46:47,999 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 16:46:48,344 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.089.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:46:48,371 align.py process_cal():249 [1] seabird25p_temperature: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:46:48,854 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.089.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:46:48,887 align.py process_cal():249 [1] seabird25p_conductivity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:46:49,332 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.089.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:46:49,363 align.py process_cal():249 [1] seabird25p_salinity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:46:49,828 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.089.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:46:49,860 align.py process_cal():249 [1] seabird25p_temperature_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:46:50,312 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.089.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:46:50,341 align.py process_cal():249 [1] seabird25p_conductivity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:46:50,788 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.089.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:46:50,817 align.py process_cal():249 [1] seabird25p_salinity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:46:51,268 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.089.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:46:51,298 align.py process_cal():249 [1] seabird25p_dissolvedO2_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:46:51,736 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.089.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:46:51,765 align.py process_cal():249 [1] seabird25p_oxygen_mll_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:46:52,223 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.089.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:46:52,252 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:46:52,707 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.089.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:46:52,745 align.py process_cal():249 [1] seabird25p_dissolvedO2_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:46:53,259 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.089.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:46:53,287 align.py process_cal():249 [1] seabird25p_oxygen_mll_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:46:53,727 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.089.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:46:53,755 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:46:54,197 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.089.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:46:54,225 align.py process_cal():249 [1] seabird25p_beam_transmittance: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:46:54,664 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.089.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:46:54,689 align.py process_cal():249 [1] seabird25p_depth: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:46:55,129 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.089.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:46:55,162 align.py process_cal():249 [1] seabird25p_par: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:46:55,647 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 16:46:55,849 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/i2map/missionnetcdfs/2021.089.00/i2map_2021.089.00_align.nc INFO 2025-10-21 16:46:56,041 align.py write_netcdf():342 [1] Data variables written: navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_latitude, seabird25p_longitude, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_par, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-10-21 16:46:56,049 process.py resample():273 [1] Resampling steps for 2021.089.00 INFO 2025-10-21 16:46:56,050 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-10-21 16:46:56,081 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2021.089.00/i2map_2021.089.00_align.nc mission netCDF file INFO 2025-10-21 16:46:56,090 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2021.089.00/i2map_2021.089.00_align.nc mission netCDF file INFO 2025-10-21 16:46:56,094 resample.py get_mission_start_end():1145 [1] navigation: 2021-03-30T15:56:10.505371648 to 2021-03-31T19:33:26.883513088 (0 days 00:00:00.049996544 before mission_end) INFO 2025-10-21 16:46:56,101 resample.py get_mission_start_end():1145 [1] seabird25p: 2021-03-30T15:55:53.546533376 to 2021-03-31T19:33:26.933509632 (0 days 00:00:00 before mission_end) INFO 2025-10-21 16:46:56,106 resample.py get_mission_start_end():1145 [1] tailcone : 2021-03-30T15:55:40.847403264 to 2021-03-31T19:33:26.843515648 (0 days 00:00:00.089993984 before mission_end) INFO 2025-10-21 16:46:56,108 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2021.089.00/i2map_2021.089.00_align.nc mission netCDF file INFO 2025-10-21 16:46:56,108 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-10-21 16:46:57,532 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-10-21 16:46:57,701 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-10-21 16:46:57,864 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-10-21 16:46:58,024 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-10-21 16:46:58,280 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature with frequency 1S following 3 point median filter INFO 2025-10-21 16:46:58,546 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity with frequency 1S following 3 point median filter INFO 2025-10-21 16:46:58,836 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity with frequency 1S following 3 point median filter INFO 2025-10-21 16:46:59,100 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 16:46:59,367 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 16:46:59,631 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 16:46:59,895 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_port with frequency 1S following 3 point median filter INFO 2025-10-21 16:47:00,162 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_port with frequency 1S following 3 point median filter INFO 2025-10-21 16:47:00,426 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_port with frequency 1S following 3 point median filter INFO 2025-10-21 16:47:00,689 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 16:47:00,951 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 16:47:01,216 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 16:47:01,478 resample.py resample_variable():1031 [1] Resampling seabird25p_beam_transmittance with frequency 1S following 3 point median filter INFO 2025-10-21 16:47:01,736 resample.py resample_variable():1031 [1] Resampling seabird25p_par with frequency 1S following 3 point median filter INFO 2025-10-21 16:47:01,902 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-10-21 16:47:02,505 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/i2map/missionnetcdfs/2021.089.00/i2map_2021.089.00_1S.nc INFO 2025-10-21 16:47:02,511 process.py archive():337 [1] Archiving steps for 2021.089.00 INFO 2025-10-21 16:47:02,511 process.py archive():347 [1] nc_file_base = /data/auv_data/i2map/missionnetcdfs/2021.089.00/i2map_2021.089.00, BASE_PATH = /data/auv_data INFO 2025-10-21 16:47:02,513 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/i2map/missionnetcdfs/2021.089.00/i2map_2021.089.00 files to /Volumes/AUVCTD/surveys/2021/netcdf INFO 2025-10-21 16:47:02,514 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2021/netcdf/i2map_2021.089.00_1S.nc INFO 2025-10-21 16:47:02,570 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.089.00/i2map_2021.089.00_1S.nc /Volumes/AUVCTD/surveys/2021/netcdf done. INFO 2025-10-21 16:47:02,571 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2021/netcdf/i2map_2021.089.00_cal.nc INFO 2025-10-21 16:47:02,964 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.089.00/i2map_2021.089.00_cal.nc /Volumes/AUVCTD/surveys/2021/netcdf done. INFO 2025-10-21 16:47:02,965 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2021/netcdf/i2map_2021.089.00_align.nc INFO 2025-10-21 16:47:03,344 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.089.00/i2map_2021.089.00_align.nc /Volumes/AUVCTD/surveys/2021/netcdf done. INFO 2025-10-21 16:47:03,358 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.089.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021089/2021.089.00 done. INFO 2025-10-21 16:47:03,758 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.089.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021089/2021.089.00 done. INFO 2025-10-21 16:47:03,892 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.089.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021089/2021.089.00 done. INFO 2025-10-21 16:47:04,171 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.089.00/seabird25p.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021089/2021.089.00 done. INFO 2025-10-21 16:47:04,260 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.089.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021089/2021.089.00 done. INFO 2025-10-21 16:47:04,260 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-10-21 16:47:04,260 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.089.00/i2map_2021.089.00_processing.log /Volumes/AUVCTD/surveys/2021/netcdf