INFO 2025-10-21 16:39:29,488 process.py process_mission():429 [1] commandline = /src/data/process_i2map.py -v --noinput --start_year 2021 --end_year 2021 --start_yd 1 --end_yd 365 --num_cores 1 --clobber INFO 2025-10-21 16:39:29,488 process.py process_mission():449 [1] Processing i2map mission 2021.062.01 by user docker_user on host 5757469a1a5e INFO 2025-10-21 16:39:29,489 process.py download_process():165 [1] Download and processing steps for 2021.062.01 INFO 2025-10-21 16:39:29,489 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/M3/master/i2MAP/2021/03/20210303/2021.062.01 INFO 2025-10-21 16:39:29,489 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/M3/master/i2MAP/2021/03/20210303/2021.062.01 to /data/auv_data/i2map/missionlogs/2021.062.01 INFO 2025-10-21 16:39:30,221 logs2netcdfs.py download_process_logs():779 [1] Processing mission: i2map 2021.062.01 INFO 2025-10-21 16:39:30,221 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.062.01/gps.log (93092 bytes) INFO 2025-10-21 16:39:30,253 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.062.01/navigation.log (30960224 bytes) INFO 2025-10-21 16:39:32,959 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.062.01/parosci.log (8711126 bytes) INFO 2025-10-21 16:39:33,764 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.062.01/seabird25p.log (19811019 bytes) INFO 2025-10-21 16:39:35,151 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2021.062.01/seabird25p.log: [ 1 2170] INFO 2025-10-21 16:39:35,225 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2021.062.01/tailCone.log (4378123 bytes) INFO 2025-10-21 16:39:35,770 logs2netcdfs.py download_process_logs():807 [1] Time to process: 5.55 seconds INFO 2025-10-21 16:39:35,771 process.py calibrate():227 [1] Calibration steps for 2021.062.01 INFO 2025-10-21 16:39:35,936 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-10-21 16:39:35,938 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-10-21 16:39:36,997 calibrate.py _nudge_pos():1806 [1] 140: 0.180 0.0010710 0.0074392 36111 120.37 1.322 11.452 2021-03-03T19:12:38.039746816 INFO 2025-10-21 16:39:39,263 calibrate.py _nudge_pos():1806 [1] 373: 0.090 0.0001386 0.0010671 5190 17.30 1.191 11.432 2021-03-03T19:33:48.232732416 INFO 2025-10-21 16:39:41,601 calibrate.py _nudge_pos():1806 [1] 609: 0.180 0.0053850 0.0059028 43548 145.16 5.512 7.535 2021-03-03T22:02:52.839985152 INFO 2025-10-21 16:39:48,438 calibrate.py _nudge_pos():1862 [1] 1242: - - - 3 0.01 - - INFO 2025-10-21 16:39:48,438 calibrate.py _nudge_pos():1868 [1] Points in final series = 90966 INFO 2025-10-21 16:39:56,412 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 143 on port side INFO 2025-10-21 16:39:56,446 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "143" INFO 2025-10-21 16:39:57,590 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2011_June 2012_Oct 2013-Dec 2013_July 2015-Oct 2017_Mar 2020_Feb 2023_Jan 2024_Jan WARNING 2025-10-21 16:39:57,596 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2011_June INFO 2025-10-21 16:39:57,597 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 16:39:57,620 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2012_Oct INFO 2025-10-21 16:39:57,620 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 16:39:57,625 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013-Dec INFO 2025-10-21 16:39:57,625 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 16:39:57,630 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July INFO 2025-10-21 16:39:57,630 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 16:39:57,635 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2015-Oct INFO 2025-10-21 16:39:57,636 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 16:39:57,641 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2017_Mar INFO 2025-10-21 16:39:57,641 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 16:39:57,646 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2020_Feb INFO 2025-10-21 16:39:57,646 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 16:39:57,652 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2023_Jan INFO 2025-10-21 16:39:57,652 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 16:39:57,658 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2024_Jan INFO 2025-10-21 16:39:57,658 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 16:39:57,666 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July/Oxygen_SBE43_0143.XML has CalibrationDate 2013-07-17 00:00:00+00:00 INFO 2025-10-21 16:39:57,666 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July/Oxygen_SBE43_0143.XML is just before 2021.062.01 with mission_start=2021-03-03T17:10:24.352138752 INFO 2025-10-21 16:40:00,301 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_port: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July/Oxygen_SBE43_0143.XML file: {'Soc': 0.42815, 'offset': -0.4829, 'A': -0.0031081, 'B': 0.0001985, 'C': -3.3814e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.28, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 16:40:00,307 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 3968 on stbd side INFO 2025-10-21 16:40:00,307 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "3968" INFO 2025-10-21 16:40:00,452 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2020_Jul 2025_Jan WARNING 2025-10-21 16:40:00,457 calibrate.py _cal_date_xml_files():1081 [1] Found 3 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul INFO 2025-10-21 16:40:00,457 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 16:40:00,479 calibrate.py _cal_date_xml_files():1081 [1] Found 3 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2025_Jan INFO 2025-10-21 16:40:00,479 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 16:40:00,491 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml has CalibrationDate 2020-06-16 00:00:00+00:00 INFO 2025-10-21 16:40:00,492 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml is just before 2021.062.01 with mission_start=2021-03-03T17:10:24.352138752 INFO 2025-10-21 16:40:03,153 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_stbd: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml file: {'Soc': 0.43332, 'offset': -0.5106, 'A': -0.0037655, 'B': 0.00018802, 'C': -3.038e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.54, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 16:40:06,797 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 14 seconds, d_end_time_diff: -1 seconds INFO 2025-10-21 16:40:07,856 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 14 seconds, d_end_time_diff: -1 seconds INFO 2025-10-21 16:40:07,860 calibrate.py _ctd_process():2919 [1] Performing range checking of ['seabird25p_salinity'] in 2021.062.01/seabird25p.nc WARNING 2025-10-21 16:40:07,862 calibrate.py _range_qc_combined_nc():890 [1] More than 500 (627) seabird25p_salinity values found outside of range. This may indicate a problem with the seabird25p data. INFO 2025-10-21 16:40:07,862 calibrate.py _range_qc_combined_nc():898 [1] Setting 627 seabird25p_salinity values to NaN INFO 2025-10-21 16:40:07,862 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('seabird25p_salinity', Range(min=30, max=40))] INFO 2025-10-21 16:40:07,862 calibrate.py _range_qc_combined_nc():936 [1] Done range checking seabird25p INFO 2025-10-21 16:40:07,936 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/i2map/missionnetcdfs/2021.062.01/i2map_2021.062.01_cal.nc INFO 2025-10-21 16:40:20,925 calibrate.py write_netcdf():3512 [1] Data variables written: depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_par, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_propRpm, tailcone_time, time INFO 2025-10-21 16:40:20,928 process.py align():251 [1] Alignment steps for 2021.062.01 INFO 2025-10-21 16:40:20,953 align.py process_cal():139 [1] Processing i2map_2021.062.01_cal.nc from /data/auv_data/i2map/missionnetcdfs/2021.062.01 INFO 2025-10-21 16:40:20,981 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 16:40:20,985 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 16:40:21,062 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 16:40:21,067 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 16:40:21,135 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 16:40:21,140 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 16:40:21,181 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-10-21 16:40:21,181 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-10-21 16:40:21,207 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 16:40:21,211 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 16:40:21,283 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.062.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:40:21,290 align.py process_cal():249 [1] seabird25p_temperature: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:40:21,383 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.062.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:40:21,391 align.py process_cal():249 [1] seabird25p_conductivity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:40:21,482 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.062.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:40:21,489 align.py process_cal():249 [1] seabird25p_salinity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:40:21,579 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.062.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:40:21,586 align.py process_cal():249 [1] seabird25p_temperature_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:40:21,675 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.062.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:40:21,682 align.py process_cal():249 [1] seabird25p_conductivity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:40:21,771 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.062.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:40:21,777 align.py process_cal():249 [1] seabird25p_salinity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:40:21,867 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.062.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:40:21,873 align.py process_cal():249 [1] seabird25p_dissolvedO2_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:40:21,963 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.062.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:40:21,970 align.py process_cal():249 [1] seabird25p_oxygen_mll_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:40:22,060 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.062.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:40:22,067 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:40:22,157 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.062.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:40:22,163 align.py process_cal():249 [1] seabird25p_dissolvedO2_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:40:22,253 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.062.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:40:22,260 align.py process_cal():249 [1] seabird25p_oxygen_mll_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:40:22,350 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.062.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:40:22,357 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:40:22,447 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.062.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:40:22,453 align.py process_cal():249 [1] seabird25p_beam_transmittance: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:40:22,544 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.062.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:40:22,550 align.py process_cal():249 [1] seabird25p_depth: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:40:22,641 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2021.062.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 16:40:22,648 align.py process_cal():249 [1] seabird25p_par: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 16:40:22,749 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 16:40:22,796 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/i2map/missionnetcdfs/2021.062.01/i2map_2021.062.01_align.nc INFO 2025-10-21 16:40:22,857 align.py write_netcdf():342 [1] Data variables written: navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_latitude, seabird25p_longitude, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_par, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-10-21 16:40:22,858 process.py resample():273 [1] Resampling steps for 2021.062.01 INFO 2025-10-21 16:40:22,859 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-10-21 16:40:22,877 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2021.062.01/i2map_2021.062.01_align.nc mission netCDF file INFO 2025-10-21 16:40:22,881 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2021.062.01/i2map_2021.062.01_align.nc mission netCDF file INFO 2025-10-21 16:40:22,883 resample.py get_mission_start_end():1145 [1] navigation: 2021-03-03T17:10:34.651433216 to 2021-03-03T22:14:04.633964032 (0 days 00:00:00.089993728 before mission_end) INFO 2025-10-21 16:40:22,885 resample.py get_mission_start_end():1145 [1] seabird25p: 2021-03-03T17:10:24.352138752 to 2021-03-03T22:14:04.643963392 (0 days 00:00:00.079994368 before mission_end) INFO 2025-10-21 16:40:22,887 resample.py get_mission_start_end():1145 [1] tailcone : 2021-03-03T17:10:04.933469184 to 2021-03-03T22:14:04.723957760 (0 days 00:00:00 before mission_end) INFO 2025-10-21 16:40:22,888 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2021.062.01/i2map_2021.062.01_align.nc mission netCDF file INFO 2025-10-21 16:40:22,889 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-10-21 16:40:23,158 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-10-21 16:40:23,195 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-10-21 16:40:23,231 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-10-21 16:40:23,267 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-10-21 16:40:23,316 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature with frequency 1S following 3 point median filter INFO 2025-10-21 16:40:23,366 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity with frequency 1S following 3 point median filter INFO 2025-10-21 16:40:23,420 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity with frequency 1S following 3 point median filter INFO 2025-10-21 16:40:23,469 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 16:40:23,518 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 16:40:23,568 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 16:40:23,618 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_port with frequency 1S following 3 point median filter INFO 2025-10-21 16:40:23,672 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_port with frequency 1S following 3 point median filter INFO 2025-10-21 16:40:23,729 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_port with frequency 1S following 3 point median filter INFO 2025-10-21 16:40:23,787 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 16:40:23,845 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 16:40:23,907 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 16:40:23,970 resample.py resample_variable():1031 [1] Resampling seabird25p_beam_transmittance with frequency 1S following 3 point median filter INFO 2025-10-21 16:40:24,031 resample.py resample_variable():1031 [1] Resampling seabird25p_par with frequency 1S following 3 point median filter INFO 2025-10-21 16:40:24,071 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-10-21 16:40:24,245 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/i2map/missionnetcdfs/2021.062.01/i2map_2021.062.01_1S.nc INFO 2025-10-21 16:40:24,247 process.py archive():337 [1] Archiving steps for 2021.062.01 INFO 2025-10-21 16:40:24,247 process.py archive():347 [1] nc_file_base = /data/auv_data/i2map/missionnetcdfs/2021.062.01/i2map_2021.062.01, BASE_PATH = /data/auv_data INFO 2025-10-21 16:40:24,285 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/i2map/missionnetcdfs/2021.062.01/i2map_2021.062.01 files to /Volumes/AUVCTD/surveys/2021/netcdf INFO 2025-10-21 16:40:24,289 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2021/netcdf/i2map_2021.062.01_1S.nc INFO 2025-10-21 16:40:24,380 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.062.01/i2map_2021.062.01_1S.nc /Volumes/AUVCTD/surveys/2021/netcdf done. INFO 2025-10-21 16:40:24,381 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2021/netcdf/i2map_2021.062.01_cal.nc INFO 2025-10-21 16:40:24,486 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.062.01/i2map_2021.062.01_cal.nc /Volumes/AUVCTD/surveys/2021/netcdf done. INFO 2025-10-21 16:40:24,487 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2021/netcdf/i2map_2021.062.01_align.nc INFO 2025-10-21 16:40:24,573 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.062.01/i2map_2021.062.01_align.nc /Volumes/AUVCTD/surveys/2021/netcdf done. INFO 2025-10-21 16:40:24,585 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.062.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021062/2021.062.01 done. INFO 2025-10-21 16:40:24,682 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.062.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021062/2021.062.01 done. INFO 2025-10-21 16:40:24,710 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.062.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021062/2021.062.01 done. INFO 2025-10-21 16:40:24,771 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.062.01/seabird25p.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021062/2021.062.01 done. INFO 2025-10-21 16:40:24,794 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.062.01/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2021/2021062/2021.062.01 done. INFO 2025-10-21 16:40:24,794 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-10-21 16:40:24,794 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2021.062.01/i2map_2021.062.01_processing.log /Volumes/AUVCTD/surveys/2021/netcdf