INFO 2025-10-20 23:20:25,129 process.py process_mission():429 [1] commandline = /src/data/process_i2map.py -v --noinput --start_year 2019 --end_year 2019 --start_yd 1 --end_yd 365 --num_cores 1 --clobber INFO 2025-10-20 23:20:25,129 process.py process_mission():449 [1] Processing i2map mission 2019.294.00 by user docker_user on host bc943cff5f21 INFO 2025-10-20 23:20:25,129 process.py download_process():165 [1] Download and processing steps for 2019.294.00 INFO 2025-10-20 23:20:25,129 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/M3/master/i2MAP/2019/10/20191021/2019.294.00 INFO 2025-10-20 23:20:25,131 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/M3/master/i2MAP/2019/10/20191021/2019.294.00 to /data/auv_data/i2map/missionlogs/2019.294.00 INFO 2025-10-20 23:20:27,164 logs2netcdfs.py download_process_logs():779 [1] Processing mission: i2map 2019.294.00 INFO 2025-10-20 23:20:27,165 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2019.294.00/gps.log (279428 bytes) INFO 2025-10-20 23:20:27,208 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2019.294.00/gps.log: [1346 1347 3061 3062] INFO 2025-10-20 23:20:27,209 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2019.294.00/navigation.log (140780904 bytes) INFO 2025-10-20 23:20:37,289 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2019.294.00/navigation.log: [ 4981 4982 4983 4984 17972 17973 17974 17975 17976 17977 17978 17979 17980 17981 31453 31454 31455 31456 31457 31458 31459 31460 31461 31462 44919 44920 44921 44922 44923 44924 44925 44926 44927 44928 57910 57911 57912 57913 57914 57915 57916 57917 57918 57919 72381 72382 72383 72384 72385 72386 72387 72388 72389 72390 85197 85198 85199 85200 85201 85202 85203 85204 85205 85206 98758 98759 98760 98761 98762 98763 98764 98765 98766 98767 98768 112488 112489 112490 112491 112492 112493 112494 112495 112496 112497 126264 126265 126266 126267 126268 126269 126270 126271 126272 126273 140005 140006 140007 140008 140009 140010 140011 140012 140013 140014 140015 153636 153637 153638 153639 153640 153641 153642 153643 153644 153645 167877 167878 167879 167880 167881 167882 167883 167884 167885 167886 181353 181354 181355 181356 181357 181358 181359 181360 181361 181362 194329 194330 194331 194332 194333 194334 194335 194336 194337 194338 207885 207886 207887 207888 207889 207890 207891 207892 207893 207894 220691 220692 220693 220694 220695 220696 220697 220698 220699 220700 234503 234504 234505 234506 234507 234508 234509 234510 234511 234512 234513 254524 254525 254526 254527 254528 254529 254530 254531 254532 254533 268185 268186 268187 268188 268189 268190 268191 268192 268193 268194 281241 281242 281243 281244 281245 281246 281247 281248 281249 281250 294837 294838 294839 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36022 36023 36024 36025 36026 36027 36028 36029 36030 36031 36032 36033 36034 36035 36036 36037 36038 36039 62852 62853 62854 62855 62856 62857 62858 62859 62860 62861 62862 62863 62864 62865 62866 62867 62868 62869 62870 62871 62872 89653 89654 89655 89656 89657 89658 89659 89660 89661 89662 89663 89664 89665 89666 89667 89668 89669 89670 89671 89672 89673 115509 115510 115511 115512 115513 115514 115515 115516 115517 115518 115519 115520 115521 115522 115523 115524 115525 115526 115527 115528 115529 144313 144314 144315 144316 144317 144318 144319 144320 144321 144322 144323 144324 144325 144326 144327 144328 144329 144330 144331 144332 144333 169823 169824 169825 169826 169827 169828 169829 169830 169831 169832 169833 169834 169835 169836 169837 169838 169839 169840 169841 169842 169843 196815 196816 196817 196818 196819 196820 196821 196822 196823 196824 196825 196826 196827 196828 196829 196830 196831 196832 196833 196834 196835 224144 224145 224146 224147 224148 224149 224150 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587115 587116 612794 612795 612796 612797 612798 612799 612800 612801 612802 612803 612804 612805 612806 612807 612808 612809 612810 612811 612812 612813 612814 639568 639569 639570 639571 639572 639573 639574 639575 639576 639577 639578 639579 639580 639581 639582 639583 639584 639585 639586 639587 639588 665237 665238 665239 665240 665241 665242 665243 665244 665245 665246 665247 665248 665249 665250 665251 665252 665253 665254 665255 665256 665257 692218 692219 692220 692221 692222 692223 692224 692225 692226 692227 692228 692229 692230 692231 692232 692233 692234 692235 692236 692237 692238 719567 719568 719569 719570 719571 719572 719573 719574 719575 719576 719577 719578 719579 719580 719581 719582 719583 719584 719585 719586 719587 746781 746782 746783 746784 746785 746786 746787 746788 746789 746790 746791 746792 746793 746794 746795 746796 746797 746798 746799 746800 746801 746802 746803 746804 746805 785425 785426 785427 785428 785429 785430 785431 785432 785433 785434 785435 812308 812309 812310 812311 812312 812313 812314 812315 812316 812317 812318 812319 812320 812321 812322 812323 812324 812325 812326 812327 812328] INFO 2025-10-20 23:20:41,269 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2019.294.00/seabird25p.log (79464730 bytes) INFO 2025-10-20 23:20:46,575 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2019.294.00/seabird25p.log: [ 1 8141 8142 8143 8144 8145 8146 28912 28913 28914 28915 28916 28917 28918 28919 28920 28921 28922 28923 28924 28925 28926 28927 28928 50467 50468 50469 50470 50471 50472 50473 50474 50475 50476 50477 50478 50479 50480 50481 50482 50483 71997 71998 71999 72000 72001 72002 72003 72004 72005 72006 72007 72008 72009 72010 72011 72012 72013 92768 92769 92770 92771 92772 92773 92774 92775 92776 92777 92778 92779 92780 92781 92782 92783 92784 115906 115907 115908 115909 115910 115911 115912 115913 115914 115915 115916 115917 115918 115919 115920 115921 115922 136397 136398 136399 136400 136401 136402 136403 136404 136405 136406 136407 136408 136409 136410 136411 136412 136413 158080 158081 158082 158083 158084 158085 158086 158087 158088 158089 158090 158091 158092 158093 158094 158095 158096 180034 180035 180036 180037 180038 180039 180040 180041 180042 180043 180044 180045 180046 180047 180048 180049 180050 202060 202061 202062 202063 202064 202065 202066 202067 202068 202069 202070 202071 202072 202073 202074 202075 202076 224030 224031 224032 224033 224034 224035 224036 224037 224038 224039 224040 224041 224042 224043 224044 224045 224046 245824 245825 245826 245827 245828 245829 245830 245831 245832 245833 245834 245835 245836 245837 245838 245839 245840 268594 268595 268596 268597 268598 268599 268600 268601 268602 268603 268604 268605 268606 268607 268608 268609 268610 290140 290141 290142 290143 290144 290145 290146 290147 290148 290149 290150 290151 290152 290153 290154 290155 290156 310887 310888 310889 310890 310891 310892 310893 310894 310895 310896 310897 310898 310899 310900 310901 310902 310903 332562 332563 332564 332565 332566 332567 332568 332569 332570 332571 332572 332573 332574 332575 332576 332577 332578 353037 353038 353039 353040 353041 353042 353043 353044 353045 353046 353047 353048 353049 353050 353051 353052 353053 375120 375121 375122 375123 375124 375125 375126 375127 375128 375129 375130 375131 375132 375133 375134 375135 375136 375137 407131 407132 407133 407134 407135 407136 407137 407138 407139 407140 407141 407142 407143 407144 407145 407146 407147 428974 428975 428976 428977 428978 428979 428980 428981 428982 428983 428984 428985 428986 428987 428988 428989 428990 449848 449849 449850 449851 449852 449853 449854 449855 449856 449857 449858 449859 449860 449861 449862 449863 449864 471586 471587 471588 471589 471590 471591 471592 471593 471594 471595 471596 471597 471598 471599 471600 471601 471602 492229 492230 492231 492232 492233 492234 492235 492236 492237 492238 492239 492240 492241 492242 492243 492244 492245 513736 513737 513738 513739 513740 513741 513742 513743 513744 513745 513746 513747 513748 513749 513750 513751 513752 534355 534356 534357 534358 534359 534360 534361 534362 534363 534364 534365 534366 534367 534368 534369 534370 534371 556029 556030 556031 556032 556033 556034 556035 556036 556037 556038 556039 556040 556041 556042 556043 556044 556045 578000 578001 578002 578003 578004 578005 578006 578007 578008 578009 578010 578011 578012 578013 578014 578015 578016 599861 599862 599863 599864 599865 599866 599867 599868 599869 599870 599871 599872 599873 599874 599875 599876 599877 599878 599879 599880 630902 630903 630904 630905 630906 630907 630908 630909 630910 652497 652498 652499 652500 652501 652502 652503 652504 652505 652506 652507 652508 652509 652510 652511 652512 652513] INFO 2025-10-20 23:20:46,866 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2019.294.00/tailCone.log (19883035 bytes) INFO 2025-10-20 23:20:49,208 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2019.294.00/tailCone.log: [ 5153 5154 5155 5156 18143 18144 18145 18146 18147 18148 18149 18150 18151 18152 31622 31623 31624 31625 31626 31627 31628 31629 31630 31631 45088 45089 45090 45091 45092 45093 45094 45095 45096 45097 58079 58080 58081 58082 58083 58084 58085 58086 58087 58088 72550 72551 72552 72553 72554 72555 72556 72557 72558 72559 85366 85367 85368 85369 85370 85371 85372 85373 85374 85375 98927 98928 98929 98930 98931 98932 98933 98934 98935 98936 98937 112658 112659 112660 112661 112662 112663 112664 112665 112666 112667 112668 126434 126435 126436 126437 126438 126439 126440 126441 126442 126443 140175 140176 140177 140178 140179 140180 140181 140182 140183 140184 140185 153806 153807 153808 153809 153810 153811 153812 153813 153814 153815 168047 168048 168049 168050 168051 168052 168053 168054 168055 168056 181523 181524 181525 181526 181527 181528 181529 181530 181531 181532 194499 194500 194501 194502 194503 194504 194505 194506 194507 194508 208055 208056 208057 208058 208059 208060 208061 208062 208063 208064 220861 220862 220863 220864 220865 220866 220867 220868 220869 220870 234672 234673 234674 234675 234676 234677 234678 234679 234680 234681 234682 254693 254694 254695 254696 254697 254698 254699 254700 254701 254702 268353 268354 268355 268356 268357 268358 268359 268360 268361 268362 281409 281410 281411 281412 281413 281414 281415 281416 281417 281418 295004 295005 295006 295007 295008 295009 295010 295011 295012 295013 307915 307916 307917 307918 307919 307920 307921 307922 307923 307924 321365 321366 321367 321368 321369 321370 321371 321372 321373 321374 334261 334262 334263 334264 334265 334266 334267 334268 334269 334270 347817 347818 347819 347820 347821 347822 347823 347824 347825 347826 347827 361558 361559 361560 361561 361562 361563 361564 361565 361566 361567 375231 375232 375233 375234 375235 375236 375237 375238 375239 375240 375241 375242 375243 394646 394647 394648 394649 394650 408151 408152 408153 408154 408155 408156 408157 408158 408159 408160 408161] INFO 2025-10-20 23:20:49,254 logs2netcdfs.py download_process_logs():807 [1] Time to process: 22.09 seconds INFO 2025-10-20 23:20:49,255 process.py calibrate():227 [1] Calibration steps for 2019.294.00 INFO 2025-10-20 23:21:54,976 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-10-20 23:21:54,979 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-10-20 23:21:56,215 calibrate.py _nudge_pos():1806 [1] 145: 0.040 -0.0110690 -0.0033477 59105 197.15 -8.343 -3.146 2019-10-21T20:19:31.386270976 INFO 2025-10-20 23:21:57,536 calibrate.py _nudge_pos():1806 [1] 268: 0.090 -0.0011606 0.0019839 6635 22.11 -7.798 16.624 2019-10-21T20:43:40.377008128 INFO 2025-10-20 23:21:57,729 calibrate.py _nudge_pos():1806 [1] 286: 0.200 0.0000226 0.0000124 84 0.28 12.153 8.303 2019-10-21T20:44:14.184692480 INFO 2025-10-20 23:21:57,881 calibrate.py _nudge_pos():1806 [1] 300: 0.010 -0.0006549 -0.0002239 2366 7.88 -12.343 -5.263 2019-10-21T20:52:20.581371904 INFO 2025-10-20 23:21:58,718 calibrate.py _nudge_pos():1806 [1] 377: 0.200 -0.0092619 -0.0009962 58967 196.71 -6.996 -0.938 2019-10-22T00:10:19.214088960 INFO 2025-10-20 23:21:59,655 calibrate.py _nudge_pos():1806 [1] 461: 0.030 -0.0012609 -0.0065790 25186 84.01 -2.230 -14.511 2019-10-22T01:35:43.418051584 INFO 2025-10-20 23:22:00,678 calibrate.py _nudge_pos():1806 [1] 552: 0.030 -0.0035812 0.0003500 4240 14.13 -37.656 4.590 2019-10-22T01:51:21.413794560 INFO 2025-10-20 23:22:02,376 calibrate.py _nudge_pos():1806 [1] 703: 0.040 -0.0012570 0.0002832 2035 6.78 -27.546 7.739 2019-10-22T02:00:38.415637248 INFO 2025-10-20 23:22:03,160 calibrate.py _nudge_pos():1806 [1] 773: 0.070 -0.0012006 0.0002508 14176 47.28 -3.773 0.983 2019-10-22T02:49:04.421663488 INFO 2025-10-20 23:22:03,819 calibrate.py _nudge_pos():1806 [1] 831: 0.150 -0.0007982 0.0007628 14161 47.23 -2.511 2.993 2019-10-22T03:37:15.428236288 INFO 2025-10-20 23:22:03,923 calibrate.py _nudge_pos():1806 [1] 840: 0.060 0.0000728 0.0000408 46 0.15 72.089 50.368 2019-10-22T03:37:32.427071488 INFO 2025-10-20 23:22:04,525 calibrate.py _nudge_pos():1806 [1] 894: 0.080 0.0010392 0.0006244 14161 47.23 3.269 2.450 2019-10-22T04:25:39.437067520 INFO 2025-10-20 23:22:05,681 calibrate.py _nudge_pos():1806 [1] 999: 0.140 0.0029550 -0.0008535 13521 45.10 9.736 -3.507 2019-10-22T05:12:29.450284800 INFO 2025-10-20 23:22:06,405 calibrate.py _nudge_pos():1806 [1] 1063: 0.160 0.0006271 -0.0008579 5700 19.03 4.897 -8.355 2019-10-22T05:32:34.253190400 INFO 2025-10-20 23:22:07,449 calibrate.py _nudge_pos():1806 [1] 1158: 0.100 0.0005710 -0.0001467 3935 13.11 6.470 -2.073 2019-10-22T05:47:15.452824320 INFO 2025-10-20 23:22:08,329 calibrate.py _nudge_pos():1806 [1] 1237: 0.060 -0.0000660 -0.0001981 320 1.06 -9.218 -34.526 2019-10-22T05:49:37.453096704 INFO 2025-10-20 23:22:08,472 calibrate.py _nudge_pos():1806 [1] 1250: 0.130 -0.0003985 -0.0004464 2006 6.68 -8.860 -12.376 2019-10-22T05:56:30.454803968 INFO 2025-10-20 23:22:09,003 calibrate.py _nudge_pos():1806 [1] 1298: 0.140 0.0000047 -0.0000548 25 0.08 8.677 -126.973 2019-10-22T05:57:22.461241344 INFO 2025-10-20 23:22:09,127 calibrate.py _nudge_pos():1806 [1] 1309: 0.200 -0.0007441 0.0002782 1219 4.06 -27.230 12.699 2019-10-22T06:01:38.253718272 INFO 2025-10-20 23:22:09,963 calibrate.py _nudge_pos():1806 [1] 1384: 0.130 -0.0004592 0.0001743 1995 6.65 -10.264 4.860 2019-10-22T06:09:31.180530432 INFO 2025-10-20 23:22:25,151 calibrate.py _nudge_pos():1806 [1] 2720: 0.140 -0.0004896 0.0005095 1384 4.61 -15.778 20.481 2019-10-22T06:36:23.180101120 INFO 2025-10-20 23:22:25,516 calibrate.py _nudge_pos():1806 [1] 2752: 0.030 -0.0000704 0.0000608 46 0.15 -69.758 75.170 2019-10-22T06:37:03.377347584 INFO 2025-10-20 23:22:25,676 calibrate.py _nudge_pos():1806 [1] 2766: 0.160 -0.0005950 0.0002296 1805 6.01 -14.701 7.074 2019-10-22T06:43:17.371727104 INFO 2025-10-20 23:22:26,590 calibrate.py _nudge_pos():1806 [1] 2847: 0.160 -0.0062400 -0.0041175 59004 196.80 -4.712 -3.877 2019-10-22T10:01:25.393919232 INFO 2025-10-20 23:22:27,158 calibrate.py _nudge_pos():1806 [1] 2896: 0.020 -0.0000228 0.0000264 35 0.11 -29.931 43.242 2019-10-22T10:02:20.590138112 INFO 2025-10-20 23:22:27,377 calibrate.py _nudge_pos():1806 [1] 2915: 0.030 -0.0026862 0.0013774 6650 22.19 -17.983 11.501 2019-10-22T10:24:50.414547968 INFO 2025-10-20 23:22:28,049 calibrate.py _nudge_pos():1806 [1] 2973: 0.070 -0.0010749 -0.0004125 2535 8.45 -18.906 -9.049 2019-10-22T10:34:14.415911168 INFO 2025-10-20 23:22:28,916 calibrate.py _nudge_pos():1806 [1] 3048: 0.180 -0.0124138 -0.0015224 58484 195.06 -9.457 -1.446 2019-10-22T13:50:32.423980800 INFO 2025-10-20 23:22:29,099 calibrate.py _nudge_pos():1806 [1] 3064: 0.180 -0.0123968 -0.0015249 15 0.05 -39476.396 -6055.419 2019-10-22T13:50:47.830232320 INFO 2025-10-20 23:22:29,884 calibrate.py _nudge_pos():1806 [1] 3131: 0.040 -0.0004806 0.0028695 6780 22.60 -3.160 23.531 2019-10-22T14:14:32.343795712 INFO 2025-10-20 23:22:30,693 calibrate.py _nudge_pos():1806 [1] 3199: 0.130 -0.0007521 0.0004656 2520 8.40 -13.309 10.274 2019-10-22T14:24:03.344679680 INFO 2025-10-20 23:22:31,162 calibrate.py _nudge_pos():1806 [1] 3239: 0.180 -0.0005670 0.0004221 1824 6.08 -13.863 12.872 2019-10-22T14:30:47.147017216 INFO 2025-10-20 23:22:32,289 calibrate.py _nudge_pos():1806 [1] 3334: 0.020 -0.0003600 0.0004366 1821 6.07 -8.817 13.337 2019-10-22T14:38:25.545614592 INFO 2025-10-20 23:22:33,563 calibrate.py _nudge_pos():1806 [1] 3440: 0.050 -0.0005869 0.0001591 1931 6.43 -13.553 4.582 2019-10-22T14:46:36.551978496 INFO 2025-10-20 23:22:34,494 calibrate.py _nudge_pos():1806 [1] 3518: 0.080 -0.0034075 0.0016470 6680 22.28 -22.721 13.700 2019-10-22T15:10:10.349965824 INFO 2025-10-20 23:22:35,389 calibrate.py _nudge_pos():1806 [1] 3593: 0.040 -0.0036427 0.0020522 6731 22.43 -24.115 16.951 2019-10-22T15:33:50.552675584 INFO 2025-10-20 23:22:36,684 calibrate.py _nudge_pos():1806 [1] 3691: 0.140 -0.0043001 0.0021185 6671 22.26 -28.678 17.632 2019-10-22T15:57:43.359552512 INFO 2025-10-20 23:22:38,800 calibrate.py _nudge_pos():1862 [1] 3829: - - - 1 0.00 - - INFO 2025-10-20 23:22:38,800 calibrate.py _nudge_pos():1868 [1] Points in final series = 413653 INFO 2025-10-20 23:23:29,358 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 2935 on port side INFO 2025-10-20 23:23:29,360 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "2935" INFO 2025-10-20 23:23:29,576 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2014_Nov 2021_Mar 2022_Apr WARNING 2025-10-20 23:23:29,580 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2014_Nov INFO 2025-10-20 23:23:29,580 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-20 23:23:29,584 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2021_Mar INFO 2025-10-20 23:23:29,584 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-20 23:23:29,588 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr INFO 2025-10-20 23:23:29,588 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-20 23:23:29,594 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml has CalibrationDate 2022-03-22 00:00:00+00:00 INFO 2025-10-20 23:23:29,595 calibrate.py _read_oxy_coeffs():1253 [1] Breaking from loop as /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml is after 2019.294.00 with mission_start=2019-10-21T17:00:14.768558848 INFO 2025-10-20 23:23:29,595 calibrate.py _read_oxy_coeffs():1270 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml is the first calibration file, but is after 2019.294.00 with mission_start=2019-10-21T17:00:14.768558848 INFO 2025-10-20 23:23:41,441 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_port: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml file: {'Soc': 0.42595, 'offset': -0.5339, 'A': -0.0041113, 'B': 0.00020802, 'C': -3.0027e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.09, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-20 23:23:41,449 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 3488 on stbd side INFO 2025-10-20 23:23:41,449 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "3488" INFO 2025-10-20 23:23:41,670 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2016_dec 2021_mar 2022_Jan WARNING 2025-10-20 23:23:41,674 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec INFO 2025-10-20 23:23:41,674 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-20 23:23:41,679 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2021_mar INFO 2025-10-20 23:23:41,679 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-20 23:23:41,684 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2022_Jan INFO 2025-10-20 23:23:41,684 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-20 23:23:41,690 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec/43-3488.xml has CalibrationDate 2016-12-16 00:00:00+00:00 INFO 2025-10-20 23:23:41,690 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec/43-3488.xml is just before 2019.294.00 with mission_start=2019-10-21T17:00:14.768558848 INFO 2025-10-20 23:23:53,405 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_stbd: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec/43-3488.xml file: {'Soc': 0.44664, 'offset': -0.507, 'A': -0.0030812, 'B': 7.8442e-05, 'C': -9.0601e-07, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.44, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-20 23:24:09,566 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 2 seconds, d_end_time_diff: -1 seconds INFO 2025-10-20 23:24:14,198 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 2 seconds, d_end_time_diff: -1 seconds INFO 2025-10-20 23:24:14,207 calibrate.py _ctd_process():2919 [1] Performing range checking of ['seabird25p_salinity'] in 2019.294.00/seabird25p.nc WARNING 2025-10-20 23:24:14,211 calibrate.py _range_qc_combined_nc():890 [1] More than 500 (8344) seabird25p_salinity values found outside of range. This may indicate a problem with the seabird25p data. INFO 2025-10-20 23:24:14,212 calibrate.py _range_qc_combined_nc():898 [1] Setting 8344 seabird25p_salinity values to NaN INFO 2025-10-20 23:24:14,212 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('seabird25p_salinity', Range(min=30, max=40))] INFO 2025-10-20 23:24:14,212 calibrate.py _range_qc_combined_nc():936 [1] Done range checking seabird25p INFO 2025-10-20 23:24:21,747 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/i2map/missionnetcdfs/2019.294.00/i2map_2019.294.00_cal.nc INFO 2025-10-20 23:25:08,255 calibrate.py write_netcdf():3512 [1] Data variables written: depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_propRpm, tailcone_time, time INFO 2025-10-20 23:25:08,261 process.py align():251 [1] Alignment steps for 2019.294.00 INFO 2025-10-20 23:25:08,300 align.py process_cal():139 [1] Processing i2map_2019.294.00_cal.nc from /data/auv_data/i2map/missionnetcdfs/2019.294.00 INFO 2025-10-20 23:25:08,405 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-20 23:25:08,415 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-10-20 23:25:08,669 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-20 23:25:08,682 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-10-20 23:25:08,936 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-20 23:25:08,949 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-10-20 23:25:09,101 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-10-20 23:25:09,101 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-10-20 23:25:09,209 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-20 23:25:09,223 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-10-20 23:25:09,508 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.294.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 23:25:09,531 align.py process_cal():249 [1] seabird25p_temperature: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 23:25:09,899 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.294.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 23:25:09,925 align.py process_cal():249 [1] seabird25p_conductivity: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 23:25:10,289 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.294.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 23:25:10,314 align.py process_cal():249 [1] seabird25p_salinity: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 23:25:10,690 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.294.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 23:25:10,714 align.py process_cal():249 [1] seabird25p_temperature_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 23:25:11,079 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.294.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 23:25:11,102 align.py process_cal():249 [1] seabird25p_conductivity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 23:25:11,466 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.294.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 23:25:11,494 align.py process_cal():249 [1] seabird25p_salinity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 23:25:11,855 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.294.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 23:25:11,877 align.py process_cal():249 [1] seabird25p_dissolvedO2_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 23:25:12,237 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.294.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 23:25:12,259 align.py process_cal():249 [1] seabird25p_oxygen_mll_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 23:25:12,622 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.294.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 23:25:12,643 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 23:25:13,001 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.294.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 23:25:13,023 align.py process_cal():249 [1] seabird25p_dissolvedO2_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 23:25:13,381 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.294.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 23:25:13,407 align.py process_cal():249 [1] seabird25p_oxygen_mll_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 23:25:13,766 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.294.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 23:25:13,787 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 23:25:14,147 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.294.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 23:25:14,168 align.py process_cal():249 [1] seabird25p_beam_transmittance: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 23:25:14,529 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.294.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 23:25:14,548 align.py process_cal():249 [1] seabird25p_depth: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 23:25:14,944 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-10-20 23:25:15,115 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/i2map/missionnetcdfs/2019.294.00/i2map_2019.294.00_align.nc INFO 2025-10-20 23:25:15,266 align.py write_netcdf():342 [1] Data variables written: navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_latitude, seabird25p_longitude, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-10-20 23:25:15,270 process.py resample():273 [1] Resampling steps for 2019.294.00 INFO 2025-10-20 23:25:15,271 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-10-20 23:25:15,296 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2019.294.00/i2map_2019.294.00_align.nc mission netCDF file INFO 2025-10-20 23:25:15,304 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2019.294.00/i2map_2019.294.00_align.nc mission netCDF file INFO 2025-10-20 23:25:15,307 resample.py get_mission_start_end():1145 [1] navigation: 2019-10-21T17:00:36.817048320 to 2019-10-22T16:00:41.557345024 (0 days 00:00:00.029998080 before mission_end) INFO 2025-10-20 23:25:15,313 resample.py get_mission_start_end():1145 [1] seabird25p: 2019-10-21T17:00:14.768558848 to 2019-10-22T16:00:41.567344384 (0 days 00:00:00.019998720 before mission_end) INFO 2025-10-20 23:25:15,317 resample.py get_mission_start_end():1145 [1] tailcone : 2019-10-21T17:00:02.479400704 to 2019-10-22T16:00:41.587343104 (0 days 00:00:00 before mission_end) INFO 2025-10-20 23:25:15,318 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2019.294.00/i2map_2019.294.00_align.nc mission netCDF file INFO 2025-10-20 23:25:15,319 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-10-20 23:25:16,409 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-10-20 23:25:16,535 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-10-20 23:25:16,659 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-10-20 23:25:16,779 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-10-20 23:25:16,960 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature with frequency 1S following 3 point median filter INFO 2025-10-20 23:25:17,160 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity with frequency 1S following 3 point median filter INFO 2025-10-20 23:25:17,392 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity with frequency 1S following 3 point median filter INFO 2025-10-20 23:25:17,600 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-10-20 23:25:17,814 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-10-20 23:25:18,032 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-10-20 23:25:18,249 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_port with frequency 1S following 3 point median filter INFO 2025-10-20 23:25:18,466 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_port with frequency 1S following 3 point median filter INFO 2025-10-20 23:25:18,681 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_port with frequency 1S following 3 point median filter INFO 2025-10-20 23:25:18,896 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_stbd with frequency 1S following 3 point median filter INFO 2025-10-20 23:25:19,114 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_stbd with frequency 1S following 3 point median filter INFO 2025-10-20 23:25:19,344 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_stbd with frequency 1S following 3 point median filter INFO 2025-10-20 23:25:19,620 resample.py resample_variable():1031 [1] Resampling seabird25p_beam_transmittance with frequency 1S following 3 point median filter INFO 2025-10-20 23:25:19,757 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-10-20 23:25:20,280 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/i2map/missionnetcdfs/2019.294.00/i2map_2019.294.00_1S.nc INFO 2025-10-20 23:25:20,284 process.py archive():337 [1] Archiving steps for 2019.294.00 INFO 2025-10-20 23:25:20,284 process.py archive():347 [1] nc_file_base = /data/auv_data/i2map/missionnetcdfs/2019.294.00/i2map_2019.294.00, BASE_PATH = /data/auv_data INFO 2025-10-20 23:25:20,286 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/i2map/missionnetcdfs/2019.294.00/i2map_2019.294.00 files to /Volumes/AUVCTD/surveys/2019/netcdf INFO 2025-10-20 23:25:20,287 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2019/netcdf/i2map_2019.294.00_1S.nc INFO 2025-10-20 23:25:20,333 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2019.294.00/i2map_2019.294.00_1S.nc /Volumes/AUVCTD/surveys/2019/netcdf done. INFO 2025-10-20 23:25:20,334 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2019/netcdf/i2map_2019.294.00_cal.nc INFO 2025-10-20 23:25:20,667 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2019.294.00/i2map_2019.294.00_cal.nc /Volumes/AUVCTD/surveys/2019/netcdf done. INFO 2025-10-20 23:25:20,668 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2019/netcdf/i2map_2019.294.00_align.nc INFO 2025-10-20 23:25:20,972 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2019.294.00/i2map_2019.294.00_align.nc /Volumes/AUVCTD/surveys/2019/netcdf done. INFO 2025-10-20 23:25:20,981 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2019.294.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019294/2019.294.00 done. INFO 2025-10-20 23:25:21,332 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2019.294.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019294/2019.294.00 done. INFO 2025-10-20 23:25:21,447 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2019.294.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019294/2019.294.00 done. INFO 2025-10-20 23:25:21,658 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2019.294.00/seabird25p.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019294/2019.294.00 done. INFO 2025-10-20 23:25:21,731 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2019.294.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019294/2019.294.00 done. INFO 2025-10-20 23:25:21,731 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-10-20 23:25:21,731 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2019.294.00/i2map_2019.294.00_processing.log /Volumes/AUVCTD/surveys/2019/netcdf