INFO 2025-06-26 20:29:07,121 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 20:29:07,121 process.py process_mission():434 [1] dorado_info[mission]["comment"] = CANON-ECOHAB September 2014 with rhodamine sensor on ctdDriver2, channel 1 - ctdToUse = ctd1 INFO 2025-06-26 20:29:07,122 process.py process_mission():449 [1] Processing CANON September 2014 mission 2014.266.04 by user docker_user on host eae60d30a712 INFO 2025-06-26 20:29:07,122 process.py download_process():165 [1] Download and processing steps for 2014.266.04 INFO 2025-06-26 20:29:07,122 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2014/2014266/2014.266.04 INFO 2025-06-26 20:29:07,122 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2014/2014266/2014.266.04 to /data/auv_data/dorado/missionlogs/2014.266.04 INFO 2025-06-26 20:29:10,779 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2014.266.04 INFO 2025-06-26 20:29:10,779 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2014.266.04/ctdDriver.log (5585382 bytes) INFO 2025-06-26 20:29:11,167 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2014.266.04/ctdDriver2.log (5591620 bytes) WARNING 2025-06-26 20:29:11,436 logs2netcdfs.py _read_data():216 [1] unpack requires a buffer of 8 bytes, b = b'\n' at record 58239, for time in file /data/auv_data/dorado/missionlogs/2014.266.04/ctdDriver2.log INFO 2025-06-26 20:29:11,437 logs2netcdfs.py _read_data():224 [1] bytes read = 5591627 file size = 5591620 INFO 2025-06-26 20:29:11,437 logs2netcdfs.py _read_data():229 [1] Tried to read 8 bytes, but only 7 bytes remaining INFO 2025-06-26 20:29:11,437 logs2netcdfs.py _read_data():235 [1] Successfully unpacked 58239 records WARNING 2025-06-26 20:29:11,446 logs2netcdfs.py _create_variable():536 [1] conductivity: shape mismatch: objects cannot be broadcast to a single shape. Mismatch is between arg 0 with shape (58240,) and arg 1 with shape (58239,). INFO 2025-06-26 20:29:11,446 logs2netcdfs.py _create_variable():537 [1] len(data) (58239) does not match shape of conductivity.shape[0] (58240) WARNING 2025-06-26 20:29:11,446 logs2netcdfs.py _create_variable():544 [1] conductivity data is short by one, appending the last value: 4.3493996855478105 WARNING 2025-06-26 20:29:11,452 logs2netcdfs.py _create_variable():536 [1] temperature: shape mismatch: objects cannot be broadcast to a single shape. Mismatch is between arg 0 with shape (58240,) and arg 1 with shape (58239,). INFO 2025-06-26 20:29:11,452 logs2netcdfs.py _create_variable():537 [1] len(data) (58239) does not match shape of temperature.shape[0] (58240) WARNING 2025-06-26 20:29:11,452 logs2netcdfs.py _create_variable():544 [1] temperature data is short by one, appending the last value: 17.43539662070515 WARNING 2025-06-26 20:29:11,458 logs2netcdfs.py _create_variable():536 [1] cond_frequency: shape mismatch: objects cannot be broadcast to a single shape. Mismatch is between arg 0 with shape (58240,) and arg 1 with shape (58239,). INFO 2025-06-26 20:29:11,458 logs2netcdfs.py _create_variable():537 [1] len(data) (58239) does not match shape of cond_frequency.shape[0] (58240) WARNING 2025-06-26 20:29:11,459 logs2netcdfs.py _create_variable():544 [1] cond_frequency data is short by one, appending the last value: 6331.203125 WARNING 2025-06-26 20:29:11,464 logs2netcdfs.py _create_variable():536 [1] temp_frequency: shape mismatch: objects cannot be broadcast to a single shape. Mismatch is between arg 0 with shape (58240,) and arg 1 with shape (58239,). INFO 2025-06-26 20:29:11,464 logs2netcdfs.py _create_variable():537 [1] len(data) (58239) does not match shape of temp_frequency.shape[0] (58240) WARNING 2025-06-26 20:29:11,464 logs2netcdfs.py _create_variable():544 [1] temp_frequency data is short by one, appending the last value: 8554.6328125 WARNING 2025-06-26 20:29:11,470 logs2netcdfs.py _create_variable():536 [1] rhodamine: shape mismatch: objects cannot be broadcast to a single shape. Mismatch is between arg 0 with shape (58240,) and arg 1 with shape (58239,). INFO 2025-06-26 20:29:11,470 logs2netcdfs.py _create_variable():537 [1] len(data) (58239) does not match shape of rhodamine.shape[0] (58240) WARNING 2025-06-26 20:29:11,470 logs2netcdfs.py _create_variable():544 [1] rhodamine data is short by one, appending the last value: 0.0 WARNING 2025-06-26 20:29:11,476 logs2netcdfs.py _create_variable():536 [1] spare1: shape mismatch: objects cannot be broadcast to a single shape. Mismatch is between arg 0 with shape (58240,) and arg 1 with shape (58239,). INFO 2025-06-26 20:29:11,476 logs2netcdfs.py _create_variable():537 [1] len(data) (58239) does not match shape of spare1.shape[0] (58240) WARNING 2025-06-26 20:29:11,476 logs2netcdfs.py _create_variable():544 [1] spare1 data is short by one, appending the last value: 0.0 WARNING 2025-06-26 20:29:11,482 logs2netcdfs.py _create_variable():536 [1] spare2: shape mismatch: objects cannot be broadcast to a single shape. Mismatch is between arg 0 with shape (58240,) and arg 1 with shape (58239,). INFO 2025-06-26 20:29:11,482 logs2netcdfs.py _create_variable():537 [1] len(data) (58239) does not match shape of spare2.shape[0] (58240) WARNING 2025-06-26 20:29:11,482 logs2netcdfs.py _create_variable():544 [1] spare2 data is short by one, appending the last value: 0.0 WARNING 2025-06-26 20:29:11,487 logs2netcdfs.py _create_variable():536 [1] flow2: shape mismatch: objects cannot be broadcast to a single shape. Mismatch is between arg 0 with shape (58240,) and arg 1 with shape (58239,). INFO 2025-06-26 20:29:11,488 logs2netcdfs.py _create_variable():537 [1] len(data) (58239) does not match shape of flow2.shape[0] (58240) WARNING 2025-06-26 20:29:11,488 logs2netcdfs.py _create_variable():544 [1] flow2 data is short by one, appending the last value: 0.0 WARNING 2025-06-26 20:29:11,494 logs2netcdfs.py _create_variable():536 [1] spare3: shape mismatch: objects cannot be broadcast to a single shape. Mismatch is between arg 0 with shape (58240,) and arg 1 with shape (58239,). INFO 2025-06-26 20:29:11,495 logs2netcdfs.py _create_variable():537 [1] len(data) (58239) does not match shape of spare3.shape[0] (58240) WARNING 2025-06-26 20:29:11,495 logs2netcdfs.py _create_variable():544 [1] spare3 data is short by one, appending the last value: 0.0 WARNING 2025-06-26 20:29:11,501 logs2netcdfs.py _create_variable():536 [1] spare4: shape mismatch: objects cannot be broadcast to a single shape. Mismatch is between arg 0 with shape (58240,) and arg 1 with shape (58239,). INFO 2025-06-26 20:29:11,501 logs2netcdfs.py _create_variable():537 [1] len(data) (58239) does not match shape of spare4.shape[0] (58240) WARNING 2025-06-26 20:29:11,501 logs2netcdfs.py _create_variable():544 [1] spare4 data is short by one, appending the last value: 0.0 WARNING 2025-06-26 20:29:11,508 logs2netcdfs.py _create_variable():536 [1] salinity: shape mismatch: objects cannot be broadcast to a single shape. Mismatch is between arg 0 with shape (58240,) and arg 1 with shape (58239,). INFO 2025-06-26 20:29:11,508 logs2netcdfs.py _create_variable():537 [1] len(data) (58239) does not match shape of salinity.shape[0] (58240) WARNING 2025-06-26 20:29:11,508 logs2netcdfs.py _create_variable():544 [1] salinity data is short by one, appending the last value: 33.41090078610674 INFO 2025-06-26 20:29:11,579 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2014.266.04/ctdDriver2.log: [58239] INFO 2025-06-26 20:29:11,597 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2014.266.04/gps.log (147380 bytes) INFO 2025-06-26 20:29:11,620 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2014.266.04/hydroscatlog.log (4898566 bytes) INFO 2025-06-26 20:29:12,133 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2014.266.04/navigation.log (20939202 bytes) INFO 2025-06-26 20:29:13,621 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2014.266.04/isuslog.log (361333 bytes) INFO 2025-06-26 20:29:13,660 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2014.266.04/parosci.log (6871478 bytes) INFO 2025-06-26 20:29:14,253 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2014.266.04/tailCone.log (3501163 bytes) INFO 2025-06-26 20:29:14,680 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2014.266.04/biolume.log (4076674 bytes) INFO 2025-06-26 20:29:15,075 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 20:29:15,280 logs2netcdfs.py download_process_logs():807 [1] Time to process: 4.50 seconds INFO 2025-06-26 20:29:15,280 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2014.266.04/lopc.bin (19575476 bytes) INFO 2025-06-26 20:29:15,281 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 20:29:15 2025 INFO 2025-06-26 20:29:15,281 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2014.266.04/parosci.nc INFO 2025-06-26 20:29:15,281 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 20:29:15,281 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2014.266.04/parosci.nc INFO 2025-06-26 20:29:15,284 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1411485685.4, sensor_off_time = 1411500271.2 INFO 2025-06-26 20:29:15,284 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 14585 seconds. Expecting to read 29170 L frames from the lopc.bin file. INFO 2025-06-26 20:29:15,284 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 29170 records from the lopc.bin file. INFO 2025-06-26 20:29:15,455 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2014-09-23 15:21:25 Z and endTime = 2014-09-23 19:24:31 Z with 29170 records expected to be read from lopc.bin INFO 2025-06-26 20:29:15,455 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2014.266.04/lopc.bin INFO 2025-06-26 20:29:15,455 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2014.266.04/lopc.nc INFO 2025-06-26 20:29:15,456 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2014.266.04/lopc.nc INFO 2025-06-26 20:29:15,456 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2014.266.04 INFO 2025-06-26 20:29:15,456 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 INFO 2025-06-26 20:29:15,496 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 20:29:15,496 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 20:29:15,496 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ ERROR 2025-06-26 20:29:23,118 process.py download_process():223 [1] UnexpectedAreaOfCode: Encountered unexpected area of code - lopc.nc file is probably corrupt INFO 2025-06-26 20:29:23,119 process.py calibrate():227 [1] Calibration steps for 2014.266.04 INFO 2025-06-26 20:29:23,273 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 20:29:23,275 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 20:29:24,781 calibrate.py _nudge_pos():1806 [1] 199: 0.140 -0.0019924 0.0000461 2630 8.76 -33.742 0.975 2014-09-23T15:33:28.032992000 INFO 2025-06-26 20:29:26,020 calibrate.py _nudge_pos():1806 [1] 333: 0.150 -0.0075663 0.0007808 10945 36.48 -30.782 3.966 2014-09-23T16:12:10.033924096 INFO 2025-06-26 20:29:27,999 calibrate.py _nudge_pos():1806 [1] 549: 0.150 -0.0087436 0.0008128 12785 42.61 -30.463 3.534 2014-09-23T16:58:22.034029056 INFO 2025-06-26 20:29:28,046 calibrate.py _nudge_pos():1806 [1] 554: 0.150 0.0000126 0.0000327 95 0.31 5.969 19.351 2014-09-23T16:58:45.032453632 INFO 2025-06-26 20:29:28,824 calibrate.py _nudge_pos():1806 [1] 639: 0.160 0.0012868 0.0017727 10865 36.21 5.275 9.071 2014-09-23T17:36:22.037838336 INFO 2025-06-26 20:29:29,849 calibrate.py _nudge_pos():1806 [1] 750: 0.160 -0.0034365 -0.0006023 5450 18.16 -28.085 -6.144 2014-09-23T17:56:22.035632640 INFO 2025-06-26 20:29:30,487 calibrate.py _nudge_pos():1806 [1] 818: 0.180 -0.0007924 -0.0011839 2725 9.08 -12.954 -24.160 2014-09-23T18:06:34.033707776 INFO 2025-06-26 20:29:30,573 calibrate.py _nudge_pos():1806 [1] 827: 0.160 -0.0041644 -0.0008486 6860 22.86 -27.033 -6.878 2014-09-23T18:29:34.039171072 INFO 2025-06-26 20:29:32,356 calibrate.py _nudge_pos():1806 [1] 1019: 0.180 -0.0012716 0.0002469 2675 8.91 -21.175 5.132 2014-09-23T18:41:40.029437184 INFO 2025-06-26 20:29:33,065 calibrate.py _nudge_pos():1806 [1] 1095: 0.170 -0.0037402 0.0010852 7785 25.95 -21.394 7.750 2014-09-23T19:08:52.037637120 INFO 2025-06-26 20:29:41,937 calibrate.py _nudge_pos():1862 [1] 1987: - - - 1 0.00 - - INFO 2025-06-26 20:29:41,937 calibrate.py _nudge_pos():1868 [1] Points in final series = 72696 INFO 2025-06-26 20:29:42,155 calibrate.py _hs2_process():2400 [1] Number of bad hs2 points: 8 of 58304 INFO 2025-06-26 20:29:42,602 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 5 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 20:29:43,154 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 42 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 20:29:43,586 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 42 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 20:29:43,588 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2014.266.04/ctd1.nc INFO 2025-06-26 20:29:43,589 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 20:29:43,590 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 20:29:43,590 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 20:29:44,186 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 20:29:44,614 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 20:29:44,616 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2014.266.04/ctd2.nc INFO 2025-06-26 20:29:44,617 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 20:29:44,618 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 20:29:44,618 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 20:29:44,644 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 20:29:45,251 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 61 62 63 64 65 66 67 68 69 540 541 542] INFO 2025-06-26 20:29:45,378 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: 0 seconds ERROR 2025-06-26 20:29:58,632 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no time coordinate - likely an incomplete lopc.nc file in missionlogs/2014.266.04 ERROR 2025-06-26 20:29:58,632 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2014.266.04 INFO 2025-06-26 20:29:58,691 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2014.266.04/dorado_2014.266.04_cal.nc INFO 2025-06-26 20:29:58,806 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 20:29:58,812 process.py align():251 [1] Alignment steps for 2014.266.04 INFO 2025-06-26 20:29:58,848 align.py process_cal():139 [1] Processing dorado_2014.266.04_cal.nc from /data/auv_data/dorado/missionnetcdfs/2014.266.04 INFO 2025-06-26 20:29:58,871 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 20:29:58,875 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 20:29:58,926 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 20:29:58,930 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 20:29:58,980 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 20:29:58,985 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 20:29:59,016 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 20:29:59,016 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 20:29:59,037 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 20:29:59,041 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 20:29:59,090 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2014.266.04_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:29:59,094 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:29:59,141 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2014.266.04_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:29:59,144 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:29:59,189 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2014.266.04_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:29:59,193 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:29:59,237 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2014.266.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:29:59,241 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:29:59,286 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2014.266.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:29:59,290 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:29:59,335 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2014.266.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:29:59,339 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:29:59,385 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2014.266.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:29:59,389 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:29:59,435 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2014.266.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:29:59,439 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:29:59,484 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2014.266.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:29:59,488 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:29:59,532 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2014.266.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:29:59,536 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:29:59,581 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2014.266.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:29:59,585 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:29:59,629 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2014.266.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:29:59,633 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:29:59,678 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2014.266.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:29:59,682 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:29:59,727 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2014.266.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:29:59,730 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:29:59,775 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2014.266.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:29:59,779 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:29:59,823 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2014.266.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:29:59,827 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:29:59,873 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2014.266.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:29:59,877 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:29:59,921 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2014.266.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:29:59,925 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:29:59,971 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2014.266.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:29:59,975 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:30:00,024 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2014.266.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:30:00,028 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:30:00,077 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2014.266.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:30:00,081 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:30:00,128 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2014.266.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:30:00,132 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:30:00,189 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 20:30:00,230 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 20:30:00,271 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 20:30:00,315 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 0.98 INFO 2025-06-26 20:30:00,359 align.py process_cal():249 [1] biolume_avg_biolume: instrument_sample_rate_hz = 0.98 INFO 2025-06-26 20:30:00,428 align.py process_cal():249 [1] biolume_raw: instrument_sample_rate_hz = 59.00 INFO 2025-06-26 20:30:00,803 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 20:30:00,841 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2014.266.04/dorado_2014.266.04_align.nc INFO 2025-06-26 20:30:00,963 align.py write_netcdf():342 [1] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 20:30:00,965 process.py resample():273 [1] Resampling steps for 2014.266.04 INFO 2025-06-26 20:30:00,966 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 20:30:00,998 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2014.266.04/dorado_2014.266.04_align.nc mission netCDF file INFO 2025-06-26 20:30:01,004 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2014.266.04/dorado_2014.266.04_align.nc mission netCDF file INFO 2025-06-26 20:30:01,005 resample.py get_mission_start_end():1145 [1] navigation: 2014-09-23T15:22:12.049300224 to 2014-09-23T19:24:31.233297920 (0 days 00:00:00 before mission_end) INFO 2025-06-26 20:30:01,007 resample.py get_mission_start_end():1145 [1] hs2 : 2014-09-23T15:21:30.652136192 to 2014-09-23T19:24:31.103306752 (0 days 00:00:00.129991168 before mission_end) INFO 2025-06-26 20:30:01,009 resample.py get_mission_start_end():1145 [1] ctd1 : 2014-09-23T15:22:08.039574784 to 2014-09-23T19:24:31.233297920 (0 days 00:00:00 before mission_end) INFO 2025-06-26 20:30:01,010 resample.py get_mission_start_end():1145 [1] ctd2 : 2014-09-23T15:21:51.760689920 to 2014-09-23T19:24:31.193300480 (0 days 00:00:00.039997440 before mission_end) INFO 2025-06-26 20:30:01,012 resample.py get_mission_start_end():1145 [1] isus : 2014-09-23T15:22:41.537280000 to 2014-09-23T19:24:31.083308032 (0 days 00:00:00.149989888 before mission_end) INFO 2025-06-26 20:30:01,013 resample.py get_mission_start_end():1145 [1] biolume : 2014-09-23T15:21:24.482524416 to 2014-09-23T19:24:30.703299840 (0 days 00:00:00.529998080 before mission_end) INFO 2025-06-26 20:30:01,015 resample.py get_mission_start_end():1145 [1] tailcone : 2014-09-23T15:21:25.332500480 to 2014-09-23T19:24:31.093307136 (0 days 00:00:00.139990784 before mission_end) INFO 2025-06-26 20:30:01,016 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2014.266.04/dorado_2014.266.04_align.nc mission netCDF file INFO 2025-06-26 20:30:01,016 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 20:30:01,182 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 20:30:01,212 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 20:30:01,241 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 20:30:01,270 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 20:30:01,296 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 20:30:01,322 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 20:30:01,347 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 20:30:01,372 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 20:30:01,395 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 20:30:01,418 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 20:30:01,441 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 20:30:01,464 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 20:30:01,488 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 20:30:01,511 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 20:30:01,535 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 20:30:01,559 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 20:30:01,583 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 20:30:01,608 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 20:30:01,636 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 20:30:01,663 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 20:30:01,690 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 20:30:01,715 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 20:30:01,741 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 20:30:01,767 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 20:30:01,782 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 20:30:01,794 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 20:30:01,806 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 20:30:01,818 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 20:30:01,829 resample.py resample_variable():1031 [1] Resampling biolume_avg_biolume with frequency 1S following 3 point median filter INFO 2025-06-26 20:30:01,833 resample.py set_proxy_parameters():520 [1] Setting biolume proxy parameters for period4 INFO 2025-06-26 20:30:01,833 resample.py add_biolume_proxies():549 [1] Adding biolume proxy variables computed from biolume_raw INFO 2025-06-26 20:30:02,372 resample.py add_biolume_proxies():595 [1] Using flash_threshold = 1.0000e+11 INFO 2025-06-26 20:30:02,483 resample.py add_biolume_proxies():633 [1] Zero flow values found: 14587 of 14587 - replaced with 350 ml/s INFO 2025-06-26 20:30:02,483 resample.py add_biolume_proxies():638 [1] Computing flashes per liter: nbflash_high, nbflash_low INFO 2025-06-26 20:30:02,538 resample.py add_biolume_proxies():666 [1] Saving flash intensity: biolume_intflash - the upper bound of the background envelope INFO 2025-06-26 20:30:02,564 resample.py add_biolume_proxies():683 [1] Saving Background bioluminescence (dinoflagellates proxy) INFO 2025-06-26 20:30:02,585 resample.py select_nighttime_bl_raw():432 [1] No sunset or sunrise found during this mission. INFO 2025-06-26 20:30:02,585 resample.py add_biolume_proxies():694 [1] No nighttime_bl_raw data to compute adinos, diatoms, hdinos proxies INFO 2025-06-26 20:30:02,620 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 20:30:02,822 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2014.266.04/dorado_2014.266.04_1S.nc INFO 2025-06-26 20:30:06,467 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-26 20:30:29,276 create_products.py gulper_odv():522 [1] Wrote 16 Gulper data lines to /data/auv_data/dorado/missionodvs/2014.266.04/dorado_2014.266.04_1S_Gulper.txt INFO 2025-06-26 20:30:29,276 process.py archive():337 [1] Archiving steps for 2014.266.04 INFO 2025-06-26 20:30:29,276 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2014.266.04/dorado_2014.266.04, BASE_PATH = /data/auv_data INFO 2025-06-26 20:30:29,278 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2014.266.04/dorado_2014.266.04 files to /Volumes/AUVCTD/surveys/2014/netcdf INFO 2025-06-26 20:30:29,279 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2014/netcdf/dorado_2014.266.04_1S.nc INFO 2025-06-26 20:30:29,297 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2014.266.04/dorado_2014.266.04_1S.nc /Volumes/AUVCTD/surveys/2014/netcdf done. INFO 2025-06-26 20:30:29,298 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2014/netcdf/dorado_2014.266.04_cal.nc INFO 2025-06-26 20:30:29,399 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2014.266.04/dorado_2014.266.04_cal.nc /Volumes/AUVCTD/surveys/2014/netcdf done. INFO 2025-06-26 20:30:29,401 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2014/netcdf/dorado_2014.266.04_align.nc INFO 2025-06-26 20:30:29,534 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2014.266.04/dorado_2014.266.04_align.nc /Volumes/AUVCTD/surveys/2014/netcdf done. INFO 2025-06-26 20:30:29,556 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2014.266.04/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2014/2014266/2014.266.04 done. INFO 2025-06-26 20:30:29,577 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2014.266.04/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2014/2014266/2014.266.04 done. INFO 2025-06-26 20:30:29,582 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2014.266.04/gps.nc /Volumes/AUVCTD/missionnetcdfs/2014/2014266/2014.266.04 done. INFO 2025-06-26 20:30:29,602 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2014.266.04/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2014/2014266/2014.266.04 done. INFO 2025-06-26 20:30:29,669 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2014.266.04/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2014/2014266/2014.266.04 done. INFO 2025-06-26 20:30:29,675 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2014.266.04/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2014/2014266/2014.266.04 done. INFO 2025-06-26 20:30:29,699 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2014.266.04/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2014/2014266/2014.266.04 done. INFO 2025-06-26 20:30:29,717 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2014.266.04/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2014/2014266/2014.266.04 done. INFO 2025-06-26 20:30:29,765 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2014.266.04/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2014/2014266/2014.266.04 done. INFO 2025-06-26 20:30:29,785 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2014.266.04/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2014/2014266/2014.266.04 done. INFO 2025-06-26 20:30:29,785 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 20:30:29,786 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2014/odv/dorado_2014.266.04_1S_Gulper.txt INFO 2025-06-26 20:30:29,791 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2014.266.04/dorado_2014.266.04_1S_Gulper.txt /Volumes/AUVCTD/surveys/2014/odv done. INFO 2025-06-26 20:30:29,791 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2014.266.04/dorado_2014.266.04_processing.log /Volumes/AUVCTD/surveys/2014/netcdf