INFO 2025-06-26 20:25:08,111 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 20:25:08,111 process.py process_mission():434 [1] dorado_info[mission]["comment"] = SIMZ Summer 2014 in Bodega Bay - ctdToUse = ctd1 INFO 2025-06-26 20:25:08,111 process.py process_mission():449 [1] Processing SIMZ July 2014 mission 2014.211.02 by user docker_user on host eae60d30a712 INFO 2025-06-26 20:25:08,111 process.py download_process():165 [1] Download and processing steps for 2014.211.02 INFO 2025-06-26 20:25:08,111 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2014/2014211/2014.211.02 INFO 2025-06-26 20:25:08,111 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2014/2014211/2014.211.02 to /data/auv_data/dorado/missionlogs/2014.211.02 INFO 2025-06-26 20:25:11,176 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2014.211.02 INFO 2025-06-26 20:25:11,176 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2014.211.02/ctdDriver.log (4085958 bytes) INFO 2025-06-26 20:25:11,458 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2014.211.02/ctdDriver2.log (4079423 bytes) INFO 2025-06-26 20:25:11,746 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2014.211.02/gps.log (38804 bytes) INFO 2025-06-26 20:25:11,758 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2014.211.02/hydroscatlog.log (3577498 bytes) INFO 2025-06-26 20:25:12,122 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2014.211.02/navigation.log (15281154 bytes) INFO 2025-06-26 20:25:13,195 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2014.211.02/isuslog.log (263829 bytes) INFO 2025-06-26 20:25:13,224 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2014.211.02/parosci.log (5025110 bytes) INFO 2025-06-26 20:25:13,652 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2014.211.02/tailCone.log (2558107 bytes) INFO 2025-06-26 20:25:13,966 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2014.211.02/biolume.log (2979298 bytes) INFO 2025-06-26 20:25:14,263 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 20:25:14,411 logs2netcdfs.py download_process_logs():807 [1] Time to process: 3.23 seconds INFO 2025-06-26 20:25:14,411 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2014.211.02/lopc.bin (24592989 bytes) INFO 2025-06-26 20:25:14,411 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 20:25:14 2025 INFO 2025-06-26 20:25:14,411 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2014.211.02/parosci.nc INFO 2025-06-26 20:25:14,411 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 20:25:14,411 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2014.211.02/parosci.nc INFO 2025-06-26 20:25:14,414 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1406730487.6, sensor_off_time = 1406741144.1 INFO 2025-06-26 20:25:14,415 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 10656 seconds. Expecting to read 21312 L frames from the lopc.bin file. INFO 2025-06-26 20:25:14,415 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 21312 records from the lopc.bin file. INFO 2025-06-26 20:25:14,541 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2014-07-30 14:28:07 Z and endTime = 2014-07-30 17:25:44 Z with 21312 records expected to be read from lopc.bin INFO 2025-06-26 20:25:14,541 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2014.211.02/lopc.bin INFO 2025-06-26 20:25:14,541 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2014.211.02/lopc.nc INFO 2025-06-26 20:25:14,542 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2014.211.02/lopc.nc INFO 2025-06-26 20:25:14,542 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2014.211.02 INFO 2025-06-26 20:25:14,542 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 WARNING 2025-06-26 20:25:14,547 lopcToNetCDF.py readCframeData():665 [1] Unable to parse a float from the string cstr[:70] = A0268137 WARNING 2025-06-26 20:25:14,547 lopcToNetCDF.py readCframeData():665 [1] Unable to parse a float from the string cstr[:70] = INFO 2025-06-26 20:25:14,635 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 20:25:14,635 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 20:25:14,636 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ ERROR 2025-06-26 20:25:26,875 lopcToNetCDF.py main():2340 [1] UnicodeDecodeError: 'utf-8' codec can't decode byte 0x91 in position 0: invalid start byte INFO 2025-06-26 20:25:26,875 lopcToNetCDF.py main():2341 [1] Failed to decode all of lopc.bin - resulting lopc.nc file likely incomplete INFO 2025-06-26 20:25:26,875 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2014.211.02/parosci.nc INFO 2025-06-26 20:25:26,875 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 20:25:26,875 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2014.211.02/parosci.nc INFO 2025-06-26 20:25:26,879 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1406730487.6, sensor_off_time = 1406741144.1 INFO 2025-06-26 20:25:26,879 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 10656 seconds. Expecting to read 21312 L frames from the lopc.bin file. INFO 2025-06-26 20:25:26,879 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 21312 records from the lopc.bin file. INFO 2025-06-26 20:25:26,879 lopcToNetCDF.py constructTimestampList():1340 [1] Calling correctSampleCountList() with sampleCountList[0] = 40551 and len(sampleCountList) = 8050 INFO 2025-06-26 20:25:26,880 lopcToNetCDF.py correctSampleCountList():1737 [1] Found overflows at indices: [] INFO 2025-06-26 20:25:26,880 lopcToNetCDF.py correctSampleCountList():1745 [1] Original sampleCountList = [40551 40552 40553 ... 48853 48854 48856] INFO 2025-06-26 20:25:26,880 lopcToNetCDF.py correctSampleCountList():1746 [1] Found 0 0 values at indices: [] INFO 2025-06-26 20:25:26,880 lopcToNetCDF.py correctSampleCountList():1779 [1] Found 0 stuck values at indices: [] INFO 2025-06-26 20:25:26,880 lopcToNetCDF.py deSpike():1588 [1] d_sampleCountList = [1 1 1 ... 1 1 2] INFO 2025-06-26 20:25:26,880 lopcToNetCDF.py deSpike():1590 [1] Found 0 spike indicators at indices: [] INFO 2025-06-26 20:25:26,880 lopcToNetCDF.py correctSampleCountList():1805 [1] After despike() sampleCountList = [40551 40552 40553 ... 48853 48854 48856] INFO 2025-06-26 20:25:26,880 lopcToNetCDF.py constructTimestampList():1347 [1] correctSampleCountList() returned correctedSampleCountList = [40551 40552 40553 ... 48853 48854 48856] with len(correctedSampleCountList) = 8050 INFO 2025-06-26 20:25:26,881 lopcToNetCDF.py constructTimestampList():1358 [1] Subtracting 40551 from all values of correctedSampleCountList INFO 2025-06-26 20:25:26,881 lopcToNetCDF.py constructTimestampList():1363 [1] Constructing timestampArray from instrument corrected sampleCount and constant deltaT = 0.500000 INFO 2025-06-26 20:25:26,881 lopcToNetCDF.py constructTimestampList():1368 [1] New re-zeroed correctedSampleCountList = [0.0000e+00 5.0000e-01 1.0000e+00 ... 4.1510e+03 4.1515e+03 4.1525e+03] INFO 2025-06-26 20:25:26,881 lopcToNetCDF.py constructTimestampList():1379 [1] timestampArray = [1.40673049e+09 1.40673049e+09 1.40673049e+09 ... 1.40673464e+09 1.40673464e+09 1.40673464e+09] INFO 2025-06-26 20:25:26,881 lopcToNetCDF.py constructTimestampList():1380 [1] timestampArray[:2] = [1406730487.6 1406730488.1, ..., timestampArray[-2:] = 1406734639.1 1406734640.1] INFO 2025-06-26 20:25:26,890 lopcToNetCDF.py constructTimestampList():1389 [1] timestampList[:2] = [np.float64(1406730487.6302443), np.float64(1406730488.1302443)], ..., timestampList[-2:] = [np.float64(1406734639.1302443), np.float64(1406734640.1302443)]] INFO 2025-06-26 20:25:26,890 lopcToNetCDF.py constructTimestampList():1394 [1] Subsampling correctedSampleCountList (len = 8050) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 20:25:26,890 lopcToNetCDF.py constructTimestampList():1399 [1] lFrameCountWrittenList[:2] = [20, 41], ... lFrameCountWrittenList[-2:] = [8021, 8042] INFO 2025-06-26 20:25:26,890 lopcToNetCDF.py constructTimestampList():1420 [1] len(subSampledCorrectedSampleCountList) = 383 INFO 2025-06-26 20:25:26,890 lopcToNetCDF.py constructTimestampList():1439 [1] len(timestampList) = 8050 INFO 2025-06-26 20:25:26,890 lopcToNetCDF.py constructTimestampList():1440 [1] timestampList[:2] = [np.float64(1406730487.6302443), np.float64(1406730488.1302443)], ..., timestampList[-2:] = [np.float64(1406734639.1302443), np.float64(1406734640.1302443)]] INFO 2025-06-26 20:25:26,890 lopcToNetCDF.py constructTimestampList():1446 [1] Subsampling timestampList (len = 8050) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 20:25:26,890 lopcToNetCDF.py constructTimestampList():1457 [1] Taking indices [[np.int32(19), np.int32(40)] ... [np.int32(8020), np.int32(8041)]] from timestampList to create subSampledTimestampList INFO 2025-06-26 20:25:26,890 lopcToNetCDF.py constructTimestampList():1463 [1] len(subSampledTimestampList) = 383 INFO 2025-06-26 20:25:26,890 lopcToNetCDF.py constructTimestampList():1477 [1] Finding elements of cFrameEsecsList that != -9999 INFO 2025-06-26 20:25:26,897 lopcToNetCDF.py closeNetCDFFile():2096 [1] Writing time axis for len(tsList) = 383 INFO 2025-06-26 20:25:26,898 lopcToNetCDF.py closeNetCDFFile():2099 [1] tsList[:1] = [np.float64(1406730621.6302443)], ..., tsList[-2:] = [np.float64(1406734625.1302443), np.float64(1406734635.6302443)] INFO 2025-06-26 20:25:26,898 lopcToNetCDF.py closeNetCDFFile():2100 [1] Begin time = 2014-07-30 14:30:21 Z INFO 2025-06-26 20:25:26,898 lopcToNetCDF.py closeNetCDFFile():2103 [1] End time = 2014-07-30 15:37:15 Z INFO 2025-06-26 20:25:26,898 lopcToNetCDF.py closeNetCDFFile():2107 [1] Writing time axis for len(cFrameEsecsList) = 383 INFO 2025-06-26 20:25:26,898 lopcToNetCDF.py closeNetCDFFile():2111 [1] cFrameEsecsList[:1] = [1.40673101e+09], ..., cFrameEsecsList[-2:] = [1.40673101e+09 1.40673101e+09] INFO 2025-06-26 20:25:26,898 lopcToNetCDF.py closeNetCDFFile():2116 [1] Begin time = 2014-07-30 14:36:48 Z INFO 2025-06-26 20:25:26,898 lopcToNetCDF.py closeNetCDFFile():2120 [1] End time = 2014-07-30 14:36:48 Z INFO 2025-06-26 20:25:26,902 lopcToNetCDF.py main():2381 [1] Created file: /data/auv_data/dorado/missionnetcdfs/2014.211.02/lopc.nc INFO 2025-06-26 20:25:26,902 lopcToNetCDF.py main():2384 [1] Processing finished: Thu Jun 26 20:25:26 2025 Elapsed processing time from start of processing = 12 seconds INFO 2025-06-26 20:25:26,903 process.py calibrate():227 [1] Calibration steps for 2014.211.02 INFO 2025-06-26 20:25:27,107 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 20:25:27,109 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 20:25:27,859 calibrate.py _nudge_pos():1806 [1] 116: 0.140 -0.0000888 0.0000951 615 2.05 -6.305 8.609 2014-07-30T14:32:04.264033792 INFO 2025-06-26 20:25:28,516 calibrate.py _nudge_pos():1806 [1] 187: 0.150 -0.0000388 0.0015241 17170 57.23 -0.098 4.935 2014-07-30T15:30:28.263993344 INFO 2025-06-26 20:25:29,170 calibrate.py _nudge_pos():1806 [1] 256: 0.160 -0.0021528 0.0004604 10970 36.56 -8.557 2.333 2014-07-30T16:08:10.259036160 INFO 2025-06-26 20:25:29,831 calibrate.py _nudge_pos():1806 [1] 327: 0.170 -0.0049436 0.0005915 11345 37.81 -19.001 2.899 2014-07-30T16:47:10.258735104 INFO 2025-06-26 20:25:30,323 calibrate.py _nudge_pos():1806 [1] 379: 0.160 -0.0014917 -0.0002976 4750 15.83 -13.695 -3.483 2014-07-30T17:03:52.260093184 INFO 2025-06-26 20:25:30,961 calibrate.py _nudge_pos():1806 [1] 447: 0.170 -0.0002045 0.0007548 2515 8.38 -3.547 16.690 2014-07-30T17:13:22.261045504 INFO 2025-06-26 20:25:31,623 calibrate.py _nudge_pos():1806 [1] 517: 0.170 0.0004592 0.0016671 3315 11.05 6.042 27.965 2014-07-30T17:25:34.260900096 INFO 2025-06-26 20:25:31,714 calibrate.py _nudge_pos():1862 [1] 480: - - - 4 0.01 - - INFO 2025-06-26 20:25:31,714 calibrate.py _nudge_pos():1868 [1] Points in final series = 53051 INFO 2025-06-26 20:25:31,877 calibrate.py _hs2_process():2400 [1] Number of bad hs2 points: 298 of 42577 INFO 2025-06-26 20:25:32,205 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 7 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 20:25:32,615 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 20:25:32,934 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 20:25:32,936 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2014.211.02/ctd1.nc INFO 2025-06-26 20:25:32,937 calibrate.py _range_qc_combined_nc():898 [1] Setting 3 ctd1_salinity values to NaN INFO 2025-06-26 20:25:32,937 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 20:25:32,937 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 20:25:33,324 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 35 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 20:25:33,640 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 35 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 20:25:33,642 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2014.211.02/ctd2.nc INFO 2025-06-26 20:25:33,643 calibrate.py _range_qc_combined_nc():898 [1] Setting 19 ctd2_salinity values to NaN INFO 2025-06-26 20:25:33,644 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 20:25:33,644 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 20:25:33,665 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 20:25:34,214 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 20:25:34,245 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2014.211.02 INFO 2025-06-26 20:25:34,290 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2014.211.02/dorado_2014.211.02_cal.nc INFO 2025-06-26 20:25:34,391 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_flowSpeed, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 20:25:34,398 process.py align():251 [1] Alignment steps for 2014.211.02 INFO 2025-06-26 20:25:34,432 align.py process_cal():139 [1] Processing dorado_2014.211.02_cal.nc from /data/auv_data/dorado/missionnetcdfs/2014.211.02 INFO 2025-06-26 20:25:34,451 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 20:25:34,455 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 20:25:34,495 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 20:25:34,499 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 20:25:34,540 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 20:25:34,544 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 20:25:34,567 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 20:25:34,568 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 20:25:34,584 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 20:25:34,588 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 20:25:34,627 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2014.211.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:25:34,631 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 3.97 INFO 2025-06-26 20:25:34,667 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2014.211.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:25:34,670 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 3.97 INFO 2025-06-26 20:25:34,706 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2014.211.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:25:34,709 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 3.97 INFO 2025-06-26 20:25:34,745 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2014.211.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:25:34,748 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:25:34,785 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2014.211.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:25:34,789 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:25:34,825 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2014.211.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:25:34,828 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:25:34,865 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2014.211.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:25:34,869 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:25:34,905 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2014.211.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:25:34,908 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:25:34,945 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2014.211.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:25:34,949 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:25:34,984 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2014.211.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:25:34,988 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:25:35,024 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2014.211.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:25:35,027 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:25:35,063 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2014.211.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:25:35,066 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:25:35,103 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2014.211.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:25:35,106 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:25:35,142 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2014.211.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:25:35,145 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:25:35,182 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2014.211.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:25:35,186 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:25:35,222 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2014.211.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:25:35,226 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:25:35,265 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2014.211.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:25:35,269 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:25:35,306 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2014.211.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:25:35,309 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:25:35,347 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2014.211.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:25:35,351 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:25:35,387 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2014.211.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:25:35,390 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:25:35,426 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2014.211.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:25:35,429 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:25:35,465 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2014.211.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 20:25:35,468 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 20:25:35,513 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 20:25:35,547 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 20:25:35,581 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 20:25:35,616 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 0.98 INFO 2025-06-26 20:25:35,651 align.py process_cal():249 [1] biolume_avg_biolume: instrument_sample_rate_hz = 0.98 INFO 2025-06-26 20:25:35,704 align.py process_cal():249 [1] biolume_raw: instrument_sample_rate_hz = 59.00 INFO 2025-06-26 20:25:35,978 align.py process_cal():249 [1] lopc_countListSum: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 20:25:36,009 align.py process_cal():249 [1] lopc_transCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 20:25:36,040 align.py process_cal():249 [1] lopc_nonTransCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 20:25:36,070 align.py process_cal():249 [1] lopc_LCcount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 20:25:36,101 align.py process_cal():249 [1] lopc_flowSpeed: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 20:25:36,133 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 20:25:36,163 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2014.211.02/dorado_2014.211.02_align.nc INFO 2025-06-26 20:25:36,273 align.py write_netcdf():342 [1] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_depth, lopc_flowSpeed, lopc_latitude, lopc_longitude, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 20:25:36,276 process.py resample():273 [1] Resampling steps for 2014.211.02 INFO 2025-06-26 20:25:36,277 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 20:25:36,309 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2014.211.02/dorado_2014.211.02_align.nc mission netCDF file INFO 2025-06-26 20:25:36,315 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2014.211.02/dorado_2014.211.02_align.nc mission netCDF file INFO 2025-06-26 20:25:36,316 resample.py get_mission_start_end():1145 [1] navigation: 2014-07-30T14:28:54.077062400 to 2014-07-30T17:25:44.080227328 (0 days 00:00:00.039997440 before mission_end) INFO 2025-06-26 20:25:36,318 resample.py get_mission_start_end():1145 [1] hs2 : 2014-07-30T14:28:15.299718912 to 2014-07-30T17:25:44.120224768 (0 days 00:00:00 before mission_end) INFO 2025-06-26 20:25:36,319 resample.py get_mission_start_end():1145 [1] ctd1 : 2014-07-30T14:28:25.759002368 to 2014-07-30T17:25:44.020231424 (0 days 00:00:00.099993344 before mission_end) INFO 2025-06-26 20:25:36,321 resample.py get_mission_start_end():1145 [1] ctd2 : 2014-07-30T14:28:42.797835008 to 2014-07-30T17:25:44.040230400 (0 days 00:00:00.079994368 before mission_end) INFO 2025-06-26 20:25:36,322 resample.py get_mission_start_end():1145 [1] isus : 2014-07-30T14:29:21.825161472 to 2014-07-30T17:25:43.020300032 (0 days 00:00:01.099924736 before mission_end) INFO 2025-06-26 20:25:36,324 resample.py get_mission_start_end():1145 [1] biolume : 2014-07-30T14:28:06.180309248 to 2014-07-30T17:25:43.050263552 (0 days 00:00:01.069961216 before mission_end) INFO 2025-06-26 20:25:36,325 resample.py get_mission_start_end():1145 [1] lopc : 2014-07-30T14:30:21.630244352 to 2014-07-30T15:37:15.630244352 (0 days 01:48:28.489980416 before mission_end) WARNING 2025-06-26 20:25:36,326 resample.py get_mission_start_end():1156 [1] Instrument lopc has a gap > 5 minutes at the end of the mission: 0 days 01:48:28.489980416 INFO 2025-06-26 20:25:36,327 resample.py get_mission_start_end():1145 [1] tailcone : 2014-07-30T14:28:07.650242816 to 2014-07-30T17:25:44.030230784 (0 days 00:00:00.089993984 before mission_end) INFO 2025-06-26 20:25:36,327 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2014.211.02/dorado_2014.211.02_align.nc mission netCDF file INFO 2025-06-26 20:25:36,328 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 20:25:36,457 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 20:25:36,481 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 20:25:36,505 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 20:25:36,531 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 20:25:36,552 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 20:25:36,572 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 20:25:36,592 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 20:25:36,612 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 20:25:36,631 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 20:25:36,650 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 20:25:36,668 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 20:25:36,687 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 20:25:36,705 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 20:25:36,723 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 20:25:36,740 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 20:25:36,759 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 20:25:36,779 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 20:25:36,800 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 20:25:36,820 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 20:25:36,842 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 20:25:36,862 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 20:25:36,882 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 20:25:36,902 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 20:25:36,922 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 20:25:36,934 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 20:25:36,946 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 20:25:36,956 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 20:25:36,966 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 20:25:36,976 resample.py resample_variable():1031 [1] Resampling biolume_avg_biolume with frequency 1S following 3 point median filter INFO 2025-06-26 20:25:36,980 resample.py set_proxy_parameters():520 [1] Setting biolume proxy parameters for period4 INFO 2025-06-26 20:25:36,980 resample.py add_biolume_proxies():549 [1] Adding biolume proxy variables computed from biolume_raw INFO 2025-06-26 20:25:37,371 resample.py add_biolume_proxies():595 [1] Using flash_threshold = 1.0000e+11 INFO 2025-06-26 20:25:37,440 resample.py add_biolume_proxies():633 [1] Zero flow values found: 10658 of 10658 - replaced with 350 ml/s INFO 2025-06-26 20:25:37,440 resample.py add_biolume_proxies():638 [1] Computing flashes per liter: nbflash_high, nbflash_low INFO 2025-06-26 20:25:37,480 resample.py add_biolume_proxies():666 [1] Saving flash intensity: biolume_intflash - the upper bound of the background envelope INFO 2025-06-26 20:25:37,497 resample.py add_biolume_proxies():683 [1] Saving Background bioluminescence (dinoflagellates proxy) INFO 2025-06-26 20:25:37,513 resample.py select_nighttime_bl_raw():432 [1] No sunset or sunrise found during this mission. INFO 2025-06-26 20:25:37,513 resample.py add_biolume_proxies():694 [1] No nighttime_bl_raw data to compute adinos, diatoms, hdinos proxies INFO 2025-06-26 20:25:37,527 resample.py resample_variable():1031 [1] Resampling lopc_countListSum with frequency 1S following 3 point median filter INFO 2025-06-26 20:25:37,527 resample.py resample_variable():1038 [1] Padding lopc_countListSum with 0 days 01:48:28.489980416 of NaNs to the end of mission INFO 2025-06-26 20:25:37,537 resample.py resample_variable():1031 [1] Resampling lopc_transCount with frequency 1S following 3 point median filter INFO 2025-06-26 20:25:37,537 resample.py resample_variable():1038 [1] Padding lopc_transCount with 0 days 01:48:28.489980416 of NaNs to the end of mission INFO 2025-06-26 20:25:37,546 resample.py resample_variable():1031 [1] Resampling lopc_nonTransCount with frequency 1S following 3 point median filter INFO 2025-06-26 20:25:37,546 resample.py resample_variable():1038 [1] Padding lopc_nonTransCount with 0 days 01:48:28.489980416 of NaNs to the end of mission INFO 2025-06-26 20:25:37,555 resample.py resample_variable():1031 [1] Resampling lopc_LCcount with frequency 1S following 3 point median filter INFO 2025-06-26 20:25:37,555 resample.py resample_variable():1038 [1] Padding lopc_LCcount with 0 days 01:48:28.489980416 of NaNs to the end of mission INFO 2025-06-26 20:25:37,564 resample.py resample_variable():1031 [1] Resampling lopc_flowSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 20:25:37,564 resample.py resample_variable():1038 [1] Padding lopc_flowSpeed with 0 days 01:48:28.489980416 of NaNs to the end of mission INFO 2025-06-26 20:25:37,587 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 20:25:37,769 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2014.211.02/dorado_2014.211.02_1S.nc INFO 2025-06-26 20:25:41,331 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-26 20:25:56,092 create_products.py gulper_odv():522 [1] Wrote 10 Gulper data lines to /data/auv_data/dorado/missionodvs/2014.211.02/dorado_2014.211.02_1S_Gulper.txt INFO 2025-06-26 20:25:56,093 process.py archive():337 [1] Archiving steps for 2014.211.02 INFO 2025-06-26 20:25:56,093 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2014.211.02/dorado_2014.211.02, BASE_PATH = /data/auv_data INFO 2025-06-26 20:25:56,093 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2014.211.02/dorado_2014.211.02 files to /Volumes/AUVCTD/surveys/2014/netcdf INFO 2025-06-26 20:25:56,094 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2014/netcdf/dorado_2014.211.02_1S.nc INFO 2025-06-26 20:25:56,112 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2014.211.02/dorado_2014.211.02_1S.nc /Volumes/AUVCTD/surveys/2014/netcdf done. INFO 2025-06-26 20:25:56,113 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2014/netcdf/dorado_2014.211.02_cal.nc INFO 2025-06-26 20:25:56,187 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2014.211.02/dorado_2014.211.02_cal.nc /Volumes/AUVCTD/surveys/2014/netcdf done. INFO 2025-06-26 20:25:56,188 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2014/netcdf/dorado_2014.211.02_align.nc INFO 2025-06-26 20:25:56,298 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2014.211.02/dorado_2014.211.02_align.nc /Volumes/AUVCTD/surveys/2014/netcdf done. INFO 2025-06-26 20:25:56,316 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2014.211.02/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2014/2014211/2014.211.02 done. INFO 2025-06-26 20:25:56,331 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2014.211.02/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2014/2014211/2014.211.02 done. INFO 2025-06-26 20:25:56,335 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2014.211.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2014/2014211/2014.211.02 done. INFO 2025-06-26 20:25:56,349 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2014.211.02/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2014/2014211/2014.211.02 done. INFO 2025-06-26 20:25:56,392 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2014.211.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2014/2014211/2014.211.02 done. INFO 2025-06-26 20:25:56,398 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2014.211.02/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2014/2014211/2014.211.02 done. INFO 2025-06-26 20:25:56,414 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2014.211.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2014/2014211/2014.211.02 done. INFO 2025-06-26 20:25:56,428 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2014.211.02/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2014/2014211/2014.211.02 done. INFO 2025-06-26 20:25:56,458 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2014.211.02/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2014/2014211/2014.211.02 done. INFO 2025-06-26 20:25:56,475 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2014.211.02/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2014/2014211/2014.211.02 done. INFO 2025-06-26 20:25:56,476 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 20:25:56,477 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2014/odv/dorado_2014.211.02_1S_Gulper.txt INFO 2025-06-26 20:25:56,482 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2014.211.02/dorado_2014.211.02_1S_Gulper.txt /Volumes/AUVCTD/surveys/2014/odv done. INFO 2025-06-26 20:25:56,482 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2014.211.02/dorado_2014.211.02_processing.log /Volumes/AUVCTD/surveys/2014/netcdf