INFO 2025-06-26 19:43:26,699 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 19:43:26,699 process.py process_mission():434 [1] dorado_info[mission]["comment"] = CANON September 2013 in Monterey Bay - ctdToUse = ctd1 INFO 2025-06-26 19:43:26,699 process.py process_mission():449 [1] Processing CANON September 2013 mission 2013.260.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 19:43:26,699 process.py download_process():165 [1] Download and processing steps for 2013.260.00 INFO 2025-06-26 19:43:26,699 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2013/2013260/2013.260.00 INFO 2025-06-26 19:43:26,699 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2013/2013260/2013.260.00 to /data/auv_data/dorado/missionlogs/2013.260.00 INFO 2025-06-26 19:43:30,433 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2013.260.00 INFO 2025-06-26 19:43:30,433 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2013.260.00/ctdDriver.log (5023686 bytes) INFO 2025-06-26 19:43:30,825 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2013.260.00/ctdDriver2.log (5023487 bytes) INFO 2025-06-26 19:43:31,194 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2013.260.00/gps.log (732740 bytes) INFO 2025-06-26 19:43:31,291 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2013.260.00/hydroscatlog.log (4399186 bytes) INFO 2025-06-26 19:43:31,762 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2013.260.00/navigation.log (17779142 bytes) INFO 2025-06-26 19:43:33,071 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2013.260.00/isuslog.log (390421 bytes) INFO 2025-06-26 19:43:33,112 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2013.260.00/parosci.log (6186230 bytes) INFO 2025-06-26 19:43:33,640 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2013.260.00/tailCone.log (3145771 bytes) INFO 2025-06-26 19:43:34,030 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2013.260.00/biolume.log (3663170 bytes) INFO 2025-06-26 19:43:34,382 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 19:43:34,569 logs2netcdfs.py download_process_logs():807 [1] Time to process: 4.14 seconds INFO 2025-06-26 19:43:34,570 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2013.260.00/lopc.bin (28940060 bytes) INFO 2025-06-26 19:43:34,570 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 19:43:34 2025 INFO 2025-06-26 19:43:34,570 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2013.260.00/parosci.nc INFO 2025-06-26 19:43:34,570 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 19:43:34,570 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2013.260.00/parosci.nc INFO 2025-06-26 19:43:34,573 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1379440437.9, sensor_off_time = 1379453541.5 INFO 2025-06-26 19:43:34,573 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 13103 seconds. Expecting to read 26206 L frames from the lopc.bin file. INFO 2025-06-26 19:43:34,574 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 26206 records from the lopc.bin file. INFO 2025-06-26 19:43:34,729 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2013-09-17 17:53:57 Z and endTime = 2013-09-17 21:32:21 Z with 26206 records expected to be read from lopc.bin INFO 2025-06-26 19:43:34,729 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2013.260.00/lopc.bin INFO 2025-06-26 19:43:34,729 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2013.260.00/lopc.nc INFO 2025-06-26 19:43:34,730 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2013.260.00/lopc.nc INFO 2025-06-26 19:43:34,731 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2013.260.00 INFO 2025-06-26 19:43:34,731 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 ERROR 2025-06-26 19:43:34,733 lopcToNetCDF.py main():2340 [1] UnicodeDecodeError: 'utf-8' codec can't decode byte 0xba in position 0: invalid start byte INFO 2025-06-26 19:43:34,733 lopcToNetCDF.py main():2341 [1] Failed to decode all of lopc.bin - resulting lopc.nc file likely incomplete INFO 2025-06-26 19:43:34,733 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2013.260.00/parosci.nc INFO 2025-06-26 19:43:34,733 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 19:43:34,734 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2013.260.00/parosci.nc INFO 2025-06-26 19:43:34,736 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1379440437.9, sensor_off_time = 1379453541.5 INFO 2025-06-26 19:43:34,737 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 13103 seconds. Expecting to read 26206 L frames from the lopc.bin file. INFO 2025-06-26 19:43:34,737 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 26206 records from the lopc.bin file. INFO 2025-06-26 19:43:34,737 lopcToNetCDF.py constructTimestampList():1340 [1] Calling correctSampleCountList() with sampleCountList[0] = 49263 and len(sampleCountList) = 2 INFO 2025-06-26 19:43:34,737 lopcToNetCDF.py correctSampleCountList():1737 [1] Found overflows at indices: [] INFO 2025-06-26 19:43:34,737 lopcToNetCDF.py correctSampleCountList():1745 [1] Original sampleCountList = [49263 49264] INFO 2025-06-26 19:43:34,737 lopcToNetCDF.py correctSampleCountList():1746 [1] Found 0 0 values at indices: [] INFO 2025-06-26 19:43:34,737 lopcToNetCDF.py correctSampleCountList():1779 [1] Found 0 stuck values at indices: [] INFO 2025-06-26 19:43:34,737 lopcToNetCDF.py deSpike():1588 [1] d_sampleCountList = [1] INFO 2025-06-26 19:43:34,737 lopcToNetCDF.py deSpike():1590 [1] Found 0 spike indicators at indices: [] INFO 2025-06-26 19:43:34,737 lopcToNetCDF.py correctSampleCountList():1805 [1] After despike() sampleCountList = [49263 49264] INFO 2025-06-26 19:43:34,738 lopcToNetCDF.py constructTimestampList():1347 [1] correctSampleCountList() returned correctedSampleCountList = [49263 49264] with len(correctedSampleCountList) = 2 INFO 2025-06-26 19:43:34,738 lopcToNetCDF.py constructTimestampList():1358 [1] Subtracting 49263 from all values of correctedSampleCountList INFO 2025-06-26 19:43:34,738 lopcToNetCDF.py constructTimestampList():1363 [1] Constructing timestampArray from instrument corrected sampleCount and constant deltaT = 0.500000 INFO 2025-06-26 19:43:34,738 lopcToNetCDF.py constructTimestampList():1368 [1] New re-zeroed correctedSampleCountList = [0. 0.5] INFO 2025-06-26 19:43:34,738 lopcToNetCDF.py constructTimestampList():1379 [1] timestampArray = [1.37944044e+09 1.37944044e+09] INFO 2025-06-26 19:43:34,738 lopcToNetCDF.py constructTimestampList():1380 [1] timestampArray[:2] = [1379440437.9 1379440438.4, ..., timestampArray[-2:] = 1379440437.9 1379440438.4] INFO 2025-06-26 19:43:34,738 lopcToNetCDF.py constructTimestampList():1389 [1] timestampList[:2] = [np.float64(1379440437.874211), np.float64(1379440438.374211)], ..., timestampList[-2:] = [np.float64(1379440437.874211), np.float64(1379440438.374211)]] INFO 2025-06-26 19:43:34,738 lopcToNetCDF.py constructTimestampList():1394 [1] Subsampling correctedSampleCountList (len = 2) according to what got written to the netCDF file by the binning interval ERROR 2025-06-26 19:43:34,738 lopcToNetCDF.py main():2376 [1] KeyError: sampleCountList or cFrameEsecsList not found in self.dataStructure INFO 2025-06-26 19:43:34,738 lopcToNetCDF.py main():2379 [1] No lopc.nc file created INFO 2025-06-26 19:43:34,738 lopcToNetCDF.py main():2384 [1] Processing finished: Thu Jun 26 19:43:34 2025 Elapsed processing time from start of processing = 0 seconds INFO 2025-06-26 19:43:34,739 process.py calibrate():227 [1] Calibration steps for 2013.260.00 INFO 2025-06-26 19:43:34,890 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 19:43:34,892 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 19:43:35,610 calibrate.py _nudge_pos():1806 [1] 104: 0.100 0.0098482 -0.0045648 14023 46.75 31.285 -18.095 2013-09-17T18:42:22.325242880 INFO 2025-06-26 19:43:37,176 calibrate.py _nudge_pos():1806 [1] 271: 0.100 0.0000273 0.0000007 20 0.06 64.019 2.041 2013-09-17T18:45:12.323597056 INFO 2025-06-26 19:43:38,378 calibrate.py _nudge_pos():1806 [1] 400: 0.100 -0.0000093 -0.0000106 25 0.08 -17.267 -24.564 2013-09-17T18:47:25.324485888 INFO 2025-06-26 19:43:42,997 calibrate.py _nudge_pos():1806 [1] 895: 0.100 -0.0000080 -0.0000124 15 0.05 -25.406 -49.100 2013-09-17T18:55:42.330438656 INFO 2025-06-26 19:43:48,559 calibrate.py _nudge_pos():1806 [1] 1488: 0.100 0.0000534 -0.0000215 25 0.08 99.122 -49.809 2013-09-17T19:05:40.329472768 INFO 2025-06-26 19:43:54,592 calibrate.py _nudge_pos():1806 [1] 2129: 0.110 -0.0000024 -0.0000174 15 0.05 -7.571 -68.950 2013-09-17T19:16:25.325287680 INFO 2025-06-26 19:43:56,234 calibrate.py _nudge_pos():1806 [1] 2303: 0.110 0.0000462 -0.0000183 65 0.21 32.148 -15.870 2013-09-17T19:19:31.322545664 INFO 2025-06-26 19:44:16,645 calibrate.py _nudge_pos():1806 [1] 4476: 0.120 0.0000443 -0.0000145 40 0.13 50.626 -20.723 2013-09-17T19:55:52.323137024 INFO 2025-06-26 19:44:17,250 calibrate.py _nudge_pos():1806 [1] 4540: 0.110 0.0000144 -0.0001099 25 0.08 26.736 -254.678 2013-09-17T19:57:00.328478464 INFO 2025-06-26 19:44:17,260 calibrate.py _nudge_pos():1806 [1] 4541: 0.110 0.0000020 0.0000642 15 0.05 6.449 254.801 2013-09-17T19:57:03.328272896 INFO 2025-06-26 19:44:19,950 calibrate.py _nudge_pos():1806 [1] 4829: 0.110 0.0000109 -0.0000188 20 0.06 25.579 -55.077 2013-09-17T20:01:54.328338176 INFO 2025-06-26 19:44:24,154 calibrate.py _nudge_pos():1806 [1] 5278: 0.120 0.0000456 -0.0000101 30 0.10 69.996 -19.428 2013-09-17T20:09:28.327236864 INFO 2025-06-26 19:44:25,544 calibrate.py _nudge_pos():1806 [1] 5427: 0.120 0.0000114 -0.0000254 40 0.13 13.067 -36.195 2013-09-17T20:12:04.326550272 INFO 2025-06-26 19:44:29,490 calibrate.py _nudge_pos():1806 [1] 5850: 0.110 0.0000278 -0.0000125 15 0.05 88.423 -49.511 2013-09-17T20:19:09.327435776 INFO 2025-06-26 19:44:30,421 calibrate.py _nudge_pos():1806 [1] 5950: 0.110 0.0000167 -0.0000284 35 0.11 21.899 -46.455 2013-09-17T20:20:55.330173952 INFO 2025-06-26 19:44:33,091 calibrate.py _nudge_pos():1806 [1] 6236: 0.110 0.0000438 -0.0000415 60 0.20 33.051 -39.134 2013-09-17T20:25:52.329828352 INFO 2025-06-26 19:44:38,535 calibrate.py _nudge_pos():1806 [1] 6815: 0.120 0.0000252 0.0000098 20 0.06 59.000 28.668 2013-09-17T20:35:34.329958400 INFO 2025-06-26 19:44:40,879 calibrate.py _nudge_pos():1806 [1] 7064: 0.130 0.0000046 -0.0000250 15 0.05 14.719 -99.278 2013-09-17T20:39:45.322764288 INFO 2025-06-26 19:44:44,988 calibrate.py _nudge_pos():1806 [1] 7471: 0.120 0.0000050 -0.0000134 15 0.05 15.953 -53.086 2013-09-17T20:46:34.324745728 INFO 2025-06-26 19:44:46,641 calibrate.py _nudge_pos():1806 [1] 7645: 0.130 0.0000284 -0.0000156 30 0.10 43.661 -29.829 2013-09-17T20:49:33.322483456 INFO 2025-06-26 19:44:48,329 calibrate.py _nudge_pos():1806 [1] 7825: 0.120 0.0000431 -0.0000297 60 0.20 32.542 -27.959 2013-09-17T20:52:44.329398528 INFO 2025-06-26 19:44:49,303 calibrate.py _nudge_pos():1806 [1] 7928: 0.130 -0.0000164 -0.0000139 15 0.05 -52.073 -55.069 2013-09-17T20:54:29.322206208 INFO 2025-06-26 19:44:49,764 calibrate.py _nudge_pos():1806 [1] 7977: 0.120 0.0000342 -0.0000044 35 0.11 44.881 -7.234 2013-09-17T20:55:24.328438016 INFO 2025-06-26 19:44:50,703 calibrate.py _nudge_pos():1806 [1] 8077: 0.120 0.0000639 -0.0000623 95 0.31 30.277 -36.869 2013-09-17T20:57:22.330354176 INFO 2025-06-26 19:44:51,584 calibrate.py _nudge_pos():1806 [1] 8170: 0.130 -0.0000005 -0.0000360 50 0.16 -0.436 -40.811 2013-09-17T20:59:05.323298816 INFO 2025-06-26 19:45:10,117 calibrate.py _nudge_pos():1806 [1] 10137: 0.120 -0.0000115 -0.0000241 15 0.05 -36.597 -95.612 2013-09-17T21:31:54.328412672 INFO 2025-06-26 19:45:10,376 calibrate.py _nudge_pos():1862 [1] 10130: - - - 1 0.00 - - INFO 2025-06-26 19:45:10,377 calibrate.py _nudge_pos():1868 [1] Points in final series = 65356 INFO 2025-06-26 19:45:10,969 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 7 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 19:45:11,467 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 23 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 19:45:11,874 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 23 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 19:45:11,876 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2013.260.00/ctd1.nc INFO 2025-06-26 19:45:11,877 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd1_salinity values to NaN INFO 2025-06-26 19:45:11,878 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 19:45:11,878 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 19:45:12,353 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 23 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 19:45:12,759 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 23 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 19:45:12,761 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2013.260.00/ctd2.nc INFO 2025-06-26 19:45:12,762 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 19:45:12,763 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 19:45:12,763 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 19:45:12,788 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 19:45:13,414 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96] INFO 2025-06-26 19:45:13,528 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -3 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 19:45:25,435 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no time coordinate - likely an incomplete lopc.nc file in missionlogs/2013.260.00 ERROR 2025-06-26 19:45:25,436 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2013.260.00 INFO 2025-06-26 19:45:25,498 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2013.260.00/dorado_2013.260.00_cal.nc INFO 2025-06-26 19:45:25,605 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 19:45:25,610 process.py align():251 [1] Alignment steps for 2013.260.00 INFO 2025-06-26 19:45:25,644 align.py process_cal():139 [1] Processing dorado_2013.260.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2013.260.00 INFO 2025-06-26 19:45:25,666 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 19:45:25,669 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 19:45:25,716 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 19:45:25,719 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 19:45:25,766 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 19:45:25,770 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 19:45:25,797 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 19:45:25,798 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 19:45:25,816 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 19:45:25,820 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 19:45:25,866 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2013.260.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:45:25,870 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:45:25,910 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2013.260.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:45:25,914 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:45:25,956 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2013.260.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:45:25,959 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:45:26,000 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2013.260.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:45:26,004 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:45:26,046 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2013.260.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:45:26,050 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:45:26,090 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2013.260.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:45:26,094 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:45:26,135 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2013.260.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:45:26,138 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:45:26,180 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2013.260.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:45:26,183 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:45:26,226 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2013.260.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:45:26,230 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:45:26,272 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2013.260.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:45:26,275 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:45:26,317 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2013.260.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:45:26,320 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:45:26,360 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2013.260.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:45:26,364 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:45:26,406 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2013.260.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:45:26,409 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:45:26,450 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2013.260.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:45:26,453 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:45:26,497 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2013.260.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:45:26,500 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:45:26,543 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2013.260.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:45:26,547 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:45:26,589 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2013.260.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:45:26,592 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:45:26,633 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2013.260.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:45:26,637 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:45:26,678 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2013.260.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:45:26,682 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:45:26,723 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2013.260.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:45:26,727 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:45:26,769 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2013.260.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:45:26,772 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:45:26,814 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2013.260.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:45:26,817 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:45:26,868 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.94 INFO 2025-06-26 19:45:26,907 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.94 INFO 2025-06-26 19:45:26,946 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.94 INFO 2025-06-26 19:45:26,987 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 0.98 INFO 2025-06-26 19:45:27,027 align.py process_cal():249 [1] biolume_avg_biolume: instrument_sample_rate_hz = 0.98 INFO 2025-06-26 19:45:27,090 align.py process_cal():249 [1] biolume_raw: instrument_sample_rate_hz = 58.99 INFO 2025-06-26 19:45:27,435 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 19:45:27,470 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2013.260.00/dorado_2013.260.00_align.nc INFO 2025-06-26 19:45:27,582 align.py write_netcdf():342 [1] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 19:45:27,585 process.py resample():273 [1] Resampling steps for 2013.260.00 INFO 2025-06-26 19:45:27,585 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 19:45:27,617 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2013.260.00/dorado_2013.260.00_align.nc mission netCDF file INFO 2025-06-26 19:45:27,622 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2013.260.00/dorado_2013.260.00_align.nc mission netCDF file INFO 2025-06-26 19:45:27,624 resample.py get_mission_start_end():1145 [1] navigation: 2013-09-17T17:54:30.142000640 to 2013-09-17T21:32:21.526549504 (0 days 00:00:00.009999360 before mission_end) INFO 2025-06-26 19:45:27,625 resample.py get_mission_start_end():1145 [1] hs2 : 2013-09-17T17:54:05.363697920 to 2013-09-17T21:32:21.446554880 (0 days 00:00:00.089993984 before mission_end) INFO 2025-06-26 19:45:27,627 resample.py get_mission_start_end():1145 [1] ctd1 : 2013-09-17T17:54:21.202612992 to 2013-09-17T21:32:21.406557696 (0 days 00:00:00.129991168 before mission_end) INFO 2025-06-26 19:45:27,629 resample.py get_mission_start_end():1145 [1] ctd2 : 2013-09-17T17:54:21.822570496 to 2013-09-17T21:32:21.536548864 (0 days 00:00:00 before mission_end) INFO 2025-06-26 19:45:27,630 resample.py get_mission_start_end():1145 [1] isus : 2013-09-17T17:55:12.459101696 to 2013-09-17T21:32:20.706605568 (0 days 00:00:00.829943296 before mission_end) INFO 2025-06-26 19:45:27,631 resample.py get_mission_start_end():1145 [1] biolume : 2013-09-17T17:53:54.664396800 to 2013-09-17T21:32:20.836562688 (0 days 00:00:00.699986176 before mission_end) INFO 2025-06-26 19:45:27,633 resample.py get_mission_start_end():1145 [1] tailcone : 2013-09-17T17:53:55.164396800 to 2013-09-17T21:32:21.396558592 (0 days 00:00:00.139990272 before mission_end) INFO 2025-06-26 19:45:27,634 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2013.260.00/dorado_2013.260.00_align.nc mission netCDF file INFO 2025-06-26 19:45:27,634 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 19:45:27,784 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 19:45:27,811 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 19:45:27,837 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 19:45:27,863 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 19:45:27,887 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 19:45:27,910 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 19:45:27,933 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 19:45:27,957 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 19:45:27,979 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 19:45:28,000 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 19:45:28,022 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 19:45:28,044 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 19:45:28,066 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 19:45:28,088 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 19:45:28,111 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 19:45:28,134 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 19:45:28,155 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 19:45:28,179 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 19:45:28,204 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 19:45:28,228 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 19:45:28,253 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 19:45:28,277 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 19:45:28,301 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 19:45:28,325 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 19:45:28,340 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 19:45:28,352 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 19:45:28,365 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 19:45:28,376 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 19:45:28,387 resample.py resample_variable():1031 [1] Resampling biolume_avg_biolume with frequency 1S following 3 point median filter INFO 2025-06-26 19:45:28,391 resample.py set_proxy_parameters():520 [1] Setting biolume proxy parameters for period4 INFO 2025-06-26 19:45:28,391 resample.py add_biolume_proxies():549 [1] Adding biolume proxy variables computed from biolume_raw INFO 2025-06-26 19:45:28,859 resample.py add_biolume_proxies():595 [1] Using flash_threshold = 1.0000e+11 INFO 2025-06-26 19:45:28,940 resample.py add_biolume_proxies():638 [1] Computing flashes per liter: nbflash_high, nbflash_low INFO 2025-06-26 19:45:28,989 resample.py add_biolume_proxies():666 [1] Saving flash intensity: biolume_intflash - the upper bound of the background envelope INFO 2025-06-26 19:45:29,011 resample.py add_biolume_proxies():683 [1] Saving Background bioluminescence (dinoflagellates proxy) INFO 2025-06-26 19:45:29,029 resample.py select_nighttime_bl_raw():432 [1] No sunset or sunrise found during this mission. INFO 2025-06-26 19:45:29,030 resample.py add_biolume_proxies():694 [1] No nighttime_bl_raw data to compute adinos, diatoms, hdinos proxies INFO 2025-06-26 19:45:29,061 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 19:45:29,245 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2013.260.00/dorado_2013.260.00_1S.nc INFO 2025-06-26 19:45:31,065 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-26 19:45:33,217 create_products.py gulper_odv():522 [1] Wrote 2 Gulper data lines to /data/auv_data/dorado/missionodvs/2013.260.00/dorado_2013.260.00_1S_Gulper.txt INFO 2025-06-26 19:45:33,217 process.py archive():337 [1] Archiving steps for 2013.260.00 INFO 2025-06-26 19:45:33,217 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2013.260.00/dorado_2013.260.00, BASE_PATH = /data/auv_data INFO 2025-06-26 19:45:33,219 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2013.260.00/dorado_2013.260.00 files to /Volumes/AUVCTD/surveys/2013/netcdf INFO 2025-06-26 19:45:33,220 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2013/netcdf/dorado_2013.260.00_1S.nc INFO 2025-06-26 19:45:33,235 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.260.00/dorado_2013.260.00_1S.nc /Volumes/AUVCTD/surveys/2013/netcdf done. INFO 2025-06-26 19:45:33,236 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2013/netcdf/dorado_2013.260.00_cal.nc INFO 2025-06-26 19:45:33,323 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.260.00/dorado_2013.260.00_cal.nc /Volumes/AUVCTD/surveys/2013/netcdf done. INFO 2025-06-26 19:45:33,324 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2013/netcdf/dorado_2013.260.00_align.nc INFO 2025-06-26 19:45:33,453 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.260.00/dorado_2013.260.00_align.nc /Volumes/AUVCTD/surveys/2013/netcdf done. INFO 2025-06-26 19:45:33,473 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.260.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2013/2013260/2013.260.00 done. INFO 2025-06-26 19:45:33,491 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.260.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2013/2013260/2013.260.00 done. INFO 2025-06-26 19:45:33,497 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.260.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2013/2013260/2013.260.00 done. INFO 2025-06-26 19:45:33,513 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.260.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2013/2013260/2013.260.00 done. INFO 2025-06-26 19:45:33,560 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.260.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2013/2013260/2013.260.00 done. INFO 2025-06-26 19:45:33,566 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.260.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2013/2013260/2013.260.00 done. INFO 2025-06-26 19:45:33,584 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.260.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2013/2013260/2013.260.00 done. INFO 2025-06-26 19:45:33,599 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.260.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2013/2013260/2013.260.00 done. INFO 2025-06-26 19:45:33,635 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.260.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2013/2013260/2013.260.00 done. INFO 2025-06-26 19:45:33,639 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.260.00/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2013/2013260/2013.260.00 done. INFO 2025-06-26 19:45:33,639 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 19:45:33,640 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2013/odv/dorado_2013.260.00_1S_Gulper.txt INFO 2025-06-26 19:45:33,645 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2013.260.00/dorado_2013.260.00_1S_Gulper.txt /Volumes/AUVCTD/surveys/2013/odv done. INFO 2025-06-26 19:45:33,646 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.260.00/dorado_2013.260.00_processing.log /Volumes/AUVCTD/surveys/2013/netcdf