INFO 2025-06-26 19:37:08,093 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 19:37:08,093 process.py process_mission():434 [1] dorado_info[mission]["comment"] = SIMZ Molecular Ecology - August 2013 - North Monterey Bay - ctdToUse = ctd1 INFO 2025-06-26 19:37:08,093 process.py process_mission():449 [1] Processing SIMZ August 2013 mission 2013.227.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 19:37:08,093 process.py download_process():165 [1] Download and processing steps for 2013.227.00 INFO 2025-06-26 19:37:08,093 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2013/2013227/2013.227.00 INFO 2025-06-26 19:37:08,094 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2013/2013227/2013.227.00 to /data/auv_data/dorado/missionlogs/2013.227.00 INFO 2025-06-26 19:37:11,732 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2013.227.00 INFO 2025-06-26 19:37:11,733 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2013.227.00/ctdDriver.log (3802566 bytes) INFO 2025-06-26 19:37:11,998 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2013.227.00/ctdDriver2.log (3802751 bytes) INFO 2025-06-26 19:37:12,269 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2013.227.00/gps.log (269708 bytes) INFO 2025-06-26 19:37:12,305 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2013.227.00/hydroscatlog.log (3336502 bytes) INFO 2025-06-26 19:37:12,646 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2013.227.00/navigation.log (13468214 bytes) INFO 2025-06-26 19:37:13,580 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2013.227.00/isuslog.log (293589 bytes) INFO 2025-06-26 19:37:13,612 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2013.227.00/parosci.log (4692374 bytes) INFO 2025-06-26 19:37:13,997 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2013.227.00/tailCone.log (2385403 bytes) INFO 2025-06-26 19:37:14,288 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2013.227.00/biolume.log (2778226 bytes) INFO 2025-06-26 19:37:14,561 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 19:37:14,699 logs2netcdfs.py download_process_logs():807 [1] Time to process: 2.97 seconds INFO 2025-06-26 19:37:14,699 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2013.227.00/lopc.bin (34479932 bytes) INFO 2025-06-26 19:37:14,699 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 19:37:14 2025 INFO 2025-06-26 19:37:14,700 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2013.227.00/parosci.nc INFO 2025-06-26 19:37:14,700 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 19:37:14,700 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2013.227.00/parosci.nc INFO 2025-06-26 19:37:14,703 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1376578118.8, sensor_off_time = 1376588054.8 INFO 2025-06-26 19:37:14,703 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 9936 seconds. Expecting to read 19872 L frames from the lopc.bin file. INFO 2025-06-26 19:37:14,703 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 19872 records from the lopc.bin file. INFO 2025-06-26 19:37:14,820 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2013-08-15 14:48:38 Z and endTime = 2013-08-15 17:34:14 Z with 19872 records expected to be read from lopc.bin INFO 2025-06-26 19:37:14,820 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2013.227.00/lopc.bin INFO 2025-06-26 19:37:14,820 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2013.227.00/lopc.nc INFO 2025-06-26 19:37:14,820 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2013.227.00/lopc.nc INFO 2025-06-26 19:37:14,821 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2013.227.00 INFO 2025-06-26 19:37:14,821 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 INFO 2025-06-26 19:37:14,898 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 19:37:14,898 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 19:37:14,898 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ ERROR 2025-06-26 19:37:15,223 process.py download_process():223 [1] UnexpectedAreaOfCode: Encountered unexpected area of code - lopc.nc file is probably corrupt INFO 2025-06-26 19:37:15,224 process.py calibrate():227 [1] Calibration steps for 2013.227.00 INFO 2025-06-26 19:37:15,344 calibrate.py _navigation_process():1637 [1] Removing points outside of Monterey Bay for 2013.227.00/navigation.nc WARNING 2025-06-26 19:37:15,346 calibrate.py _range_qc_combined_nc():890 [1] More than 500 (680) navigation_latitude values found outside of range. This may indicate a problem with the navigation data. WARNING 2025-06-26 19:37:15,347 calibrate.py _range_qc_combined_nc():890 [1] More than 500 (680) navigation_longitude values found outside of range. This may indicate a problem with the navigation data. INFO 2025-06-26 19:37:15,347 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('navigation_latitude', Range(min=36, max=37)), ('navigation_longitude', Range(min=-122.1, max=-121.7))] INFO 2025-06-26 19:37:15,347 calibrate.py _range_qc_combined_nc():916 [1] navigation_time: deleting 680 values found outside of above ranges: ['2013-08-15T16:22:23.385969152' '2013-08-15T16:22:23.585955328' '2013-08-15T16:22:23.785941760' '2013-08-15T16:22:23.985927936' '2013-08-15T16:22:24.185914368' '2013-08-15T16:22:24.385900800' '2013-08-15T16:22:24.585886976' '2013-08-15T16:22:24.785873152' '2013-08-15T16:22:24.985859584' '2013-08-15T16:22:25.185845760' '2013-08-15T16:22:25.385832192' '2013-08-15T16:22:25.585818624' '2013-08-15T16:22:25.785804800' '2013-08-15T16:22:25.985790976' '2013-08-15T16:22:26.185777408' '2013-08-15T16:22:26.385763584' '2013-08-15T16:22:26.585749760' '2013-08-15T16:22:26.785736448' '2013-08-15T16:22:26.985722624' '2013-08-15T16:22:27.185708800' '2013-08-15T16:22:27.385695232' '2013-08-15T16:22:27.585681408' '2013-08-15T16:22:27.785667584' '2013-08-15T16:22:27.985654016' '2013-08-15T16:22:28.185640448' '2013-08-15T16:22:28.385626624' '2013-08-15T16:22:28.585613056' '2013-08-15T16:22:28.785599232' '2013-08-15T16:22:28.985585408' '2013-08-15T16:22:29.185571840' '2013-08-15T16:22:29.385558016' '2013-08-15T16:22:29.585544448' '2013-08-15T16:22:29.785530880' '2013-08-15T16:22:29.985517056' '2013-08-15T16:22:30.185503232' '2013-08-15T16:22:30.385489664' '2013-08-15T16:22:30.585475840' '2013-08-15T16:22:30.785462016' '2013-08-15T16:22:30.985448704' '2013-08-15T16:22:31.185434880' '2013-08-15T16:22:31.385421056' '2013-08-15T16:22:31.585407488' '2013-08-15T16:22:31.785393664' '2013-08-15T16:22:31.985379840' '2013-08-15T16:22:32.185366272' '2013-08-15T16:22:32.385352704' '2013-08-15T16:22:32.585338880' '2013-08-15T16:22:32.785325312' '2013-08-15T16:22:32.985311488' '2013-08-15T16:22:33.185297664' '2013-08-15T16:22:33.385284096' '2013-08-15T16:22:33.585270528' '2013-08-15T16:22:33.785256704' '2013-08-15T16:22:33.985243136' '2013-08-15T16:22:34.185229312' '2013-08-15T16:22:34.385215488' '2013-08-15T16:22:34.585201920' '2013-08-15T16:22:34.785188096' '2013-08-15T16:22:34.985174528' '2013-08-15T16:22:35.185160960' '2013-08-15T16:22:35.385147136' '2013-08-15T16:22:35.585133568' '2013-08-15T16:22:35.785119744' '2013-08-15T16:22:35.985105920' '2013-08-15T16:22:36.185092352' '2013-08-15T16:22:36.385078784' '2013-08-15T16:22:36.585064960' '2013-08-15T16:22:36.785051392' '2013-08-15T16:22:36.985037568' '2013-08-15T16:22:37.185023744' '2013-08-15T16:22:37.385010176' '2013-08-15T16:22:37.584996352' '2013-08-15T16:22:37.784982784' '2013-08-15T16:22:37.984969216' '2013-08-15T16:22:38.184955392' '2013-08-15T16:22:38.384941568' '2013-08-15T16:22:38.584928000' '2013-08-15T16:22:38.784914176' '2013-08-15T16:22:38.984900352' '2013-08-15T16:22:39.184887040' '2013-08-15T16:22:39.384873216' '2013-08-15T16:22:39.584859392' '2013-08-15T16:22:39.784845824' '2013-08-15T16:22:39.984832000' '2013-08-15T16:22:40.184818176' '2013-08-15T16:22:40.384804608' '2013-08-15T16:22:40.584791040' '2013-08-15T16:22:40.784777216' '2013-08-15T16:22:40.984763648' '2013-08-15T16:22:41.184749824' '2013-08-15T16:22:41.384736000' '2013-08-15T16:22:41.584722432' '2013-08-15T16:22:41.784708864' '2013-08-15T16:22:41.984695040' '2013-08-15T16:22:42.184681472' '2013-08-15T16:22:42.384667648' '2013-08-15T16:22:42.584653824' '2013-08-15T16:22:42.784640256' '2013-08-15T16:22:42.984626432' '2013-08-15T16:22:43.184612864' '2013-08-15T16:22:43.384599296' '2013-08-15T16:22:43.584585472' '2013-08-15T16:22:43.784571648' '2013-08-15T16:22:43.984558080' '2013-08-15T16:22:44.184544256' '2013-08-15T16:22:44.384530432' '2013-08-15T16:22:44.584517120' '2013-08-15T16:22:44.784503296' '2013-08-15T16:22:44.984489472' '2013-08-15T16:22:45.184475904' '2013-08-15T16:22:45.384462080' '2013-08-15T16:22:45.584448256' '2013-08-15T16:22:45.784434688' '2013-08-15T16:22:45.984421120' '2013-08-15T16:22:46.184407296' '2013-08-15T16:22:46.384393728' '2013-08-15T16:22:46.584379904' '2013-08-15T16:22:46.784366080' '2013-08-15T16:22:46.984352512' '2013-08-15T16:22:47.184338688' '2013-08-15T16:22:47.384325120' '2013-08-15T16:22:47.584311552' '2013-08-15T16:22:47.784297728' '2013-08-15T16:22:47.984283904' '2013-08-15T16:22:48.184270336' '2013-08-15T16:22:48.384256512' '2013-08-15T16:22:48.584242944' '2013-08-15T16:22:48.784229376' '2013-08-15T16:22:48.984215552' '2013-08-15T16:22:49.184201728' '2013-08-15T16:22:49.384188160' '2013-08-15T16:22:49.584174336' '2013-08-15T16:22:49.784160768' '2013-08-15T16:22:49.984146944' '2013-08-15T16:22:50.184133376' '2013-08-15T16:22:50.384119808' '2013-08-15T16:22:50.584105984' '2013-08-15T16:22:50.784092160' '2013-08-15T16:22:50.984078592' '2013-08-15T16:22:51.184064768' '2013-08-15T16:22:51.384051200' '2013-08-15T16:22:51.584037632' '2013-08-15T16:22:51.784023808' '2013-08-15T16:22:51.984009984' '2013-08-15T16:22:52.183996416' '2013-08-15T16:22:52.383982592' '2013-08-15T16:22:52.583968768' '2013-08-15T16:22:52.783955456' '2013-08-15T16:22:52.983941632' '2013-08-15T16:22:53.183927808' '2013-08-15T16:22:53.383914240' '2013-08-15T16:22:53.583900416' '2013-08-15T16:22:53.783886592' '2013-08-15T16:22:53.983873024' '2013-08-15T16:22:54.183859456' '2013-08-15T16:22:54.383845632' '2013-08-15T16:22:54.583832064' '2013-08-15T16:22:54.783818240' '2013-08-15T16:22:54.983804416' '2013-08-15T16:22:55.183790848' '2013-08-15T16:22:55.383777024' '2013-08-15T16:22:55.583763456' '2013-08-15T16:22:55.783749888' '2013-08-15T16:22:55.983736064' '2013-08-15T16:22:56.183722240' '2013-08-15T16:22:56.383708672' '2013-08-15T16:22:56.583694848' '2013-08-15T16:22:56.783681280' '2013-08-15T16:22:56.983667712' '2013-08-15T16:22:57.183653888' '2013-08-15T16:22:57.383640064' '2013-08-15T16:22:57.583626496' '2013-08-15T16:22:57.783612672' '2013-08-15T16:22:57.983598848' '2013-08-15T16:22:58.183585280' '2013-08-15T16:22:58.383571712' '2013-08-15T16:22:58.583557888' '2013-08-15T16:22:58.783544320' '2013-08-15T16:22:58.983530496' '2013-08-15T16:22:59.183516672' '2013-08-15T16:22:59.383503104' '2013-08-15T16:22:59.583489536' '2013-08-15T16:22:59.783475712' '2013-08-15T16:22:59.983462144' '2013-08-15T16:23:00.183448320' '2013-08-15T16:23:00.383434496' '2013-08-15T16:23:00.583420928' '2013-08-15T16:23:00.783407104' '2013-08-15T16:23:00.983393536' '2013-08-15T16:23:01.183379968' '2013-08-15T16:23:01.383366144' '2013-08-15T16:23:01.583352320' '2013-08-15T16:23:01.783338752' '2013-08-15T16:23:01.983324928' '2013-08-15T16:23:02.183311104' '2013-08-15T16:23:02.383297792' '2013-08-15T16:23:02.583283968' '2013-08-15T16:23:02.783270144' '2013-08-15T16:23:02.983256576' '2013-08-15T16:23:03.183242752' '2013-08-15T16:23:03.383228928' '2013-08-15T16:23:03.583215360' '2013-08-15T16:23:03.783201792' '2013-08-15T16:23:03.983188224' '2013-08-15T16:23:04.183174400' '2013-08-15T16:23:04.383160576' '2013-08-15T16:23:04.583147008' '2013-08-15T16:23:04.783133184' '2013-08-15T16:23:04.983119360' '2013-08-15T16:23:05.183106048' '2013-08-15T16:23:05.383092224' '2013-08-15T16:23:05.583078400' '2013-08-15T16:23:05.783064832' '2013-08-15T16:23:05.983051008' '2013-08-15T16:23:06.183037184' '2013-08-15T16:23:06.383023616' '2013-08-15T16:23:06.583010048' '2013-08-15T16:23:06.782996224' '2013-08-15T16:23:06.982982656' '2013-08-15T16:23:07.182968832' '2013-08-15T16:23:07.382955008' '2013-08-15T16:23:07.582941440' '2013-08-15T16:23:07.782927872' '2013-08-15T16:23:07.982914048' '2013-08-15T16:23:08.182900480' '2013-08-15T16:23:08.382886656' '2013-08-15T16:23:08.582872832' '2013-08-15T16:23:08.782859264' '2013-08-15T16:23:08.982845440' '2013-08-15T16:23:09.182831872' '2013-08-15T16:23:09.382818304' '2013-08-15T16:23:09.582804480' '2013-08-15T16:23:09.782790656' '2013-08-15T16:23:09.982777088' '2013-08-15T16:23:10.182763264' '2013-08-15T16:23:10.382749440' 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'2013-08-15T16:24:24.987639040' '2013-08-15T16:24:25.187625216' '2013-08-15T16:24:25.387611392' '2013-08-15T16:24:25.587597824' '2013-08-15T16:24:25.787584000' '2013-08-15T16:24:25.987570176' '2013-08-15T16:24:26.187556864' '2013-08-15T16:24:26.387543040' '2013-08-15T16:24:26.587529216' '2013-08-15T16:24:26.787515648' '2013-08-15T16:24:26.987501824' '2013-08-15T16:24:27.187488000' '2013-08-15T16:24:27.387474432' '2013-08-15T16:24:27.587460864' '2013-08-15T16:24:27.787447040' '2013-08-15T16:24:27.987433472' '2013-08-15T16:24:28.187419648' '2013-08-15T16:24:28.387405824' '2013-08-15T16:24:28.587392256' '2013-08-15T16:24:28.787378432' '2013-08-15T16:24:28.987364864' '2013-08-15T16:24:29.187351296' '2013-08-15T16:24:29.387337472' '2013-08-15T16:24:29.587323648' '2013-08-15T16:24:29.787310080' '2013-08-15T16:24:29.987296256' '2013-08-15T16:24:30.187282688' '2013-08-15T16:24:30.387269120' '2013-08-15T16:24:30.587255296' '2013-08-15T16:24:30.787241472' '2013-08-15T16:24:30.987227904' '2013-08-15T16:24:31.187214080' '2013-08-15T16:24:31.387200256' '2013-08-15T16:24:31.587186688' '2013-08-15T16:24:31.787173120' '2013-08-15T16:24:31.987159296' '2013-08-15T16:24:32.187145728' '2013-08-15T16:24:32.387131904' '2013-08-15T16:24:32.587118080' '2013-08-15T16:24:32.787104512' '2013-08-15T16:24:32.987090944' '2013-08-15T16:24:33.187077120' '2013-08-15T16:24:33.387063552' '2013-08-15T16:24:33.587049728' '2013-08-15T16:24:33.787035904' '2013-08-15T16:24:33.987022336' '2013-08-15T16:24:34.187008512' '2013-08-15T16:24:34.386994944' '2013-08-15T16:24:34.586981376' '2013-08-15T16:24:34.786967552' '2013-08-15T16:24:34.986953728' '2013-08-15T16:24:35.186940160' '2013-08-15T16:24:35.386926336' '2013-08-15T16:24:35.586912512' '2013-08-15T16:24:35.786899200' '2013-08-15T16:24:35.986885376' '2013-08-15T16:24:36.186871808' '2013-08-15T16:24:36.386857984' '2013-08-15T16:24:36.586844160' '2013-08-15T16:24:36.786830592' '2013-08-15T16:24:36.986816768' '2013-08-15T16:24:37.186803200' '2013-08-15T16:24:37.386789632' '2013-08-15T16:24:37.586775808' '2013-08-15T16:24:37.786761984' '2013-08-15T16:24:37.986748416' '2013-08-15T16:24:38.186734592' '2013-08-15T16:24:38.386720768' '2013-08-15T16:24:38.586707456' '2013-08-15T16:24:38.786693632' '2013-08-15T16:24:38.986679808' '2013-08-15T16:24:39.186666240'] INFO 2025-06-26 19:37:15,359 calibrate.py _range_qc_combined_nc():916 [1] navigation_roll: deleting 680 values found outside of above ranges: [-14.3173419 -13.98413117 -12.55659495 -10.52492639 -8.36417291 -6.75179213 -5.91464684 -6.00394844 -6.69043786 -7.5519765 -8.20460839 -8.511049 -8.64696396 -8.97508444 -9.77634119 -11.06233172 -12.56394346 -13.58287767 -13.76583694 -12.70517858 -10.36976197 -7.3161361 -4.50982063 -2.83440709 -2.96032508 -4.96420155 -8.03382206 -11.18183016 -13.15010826 -13.51289043 -12.390003 -10.39400919 -8.48307623 -7.27127522 -7.27268729 -8.31649602 -9.91328414 -11.33291819 -11.86919473 -11.24963202 -9.68154179 -7.70620356 -6.16877823 -5.52062965 -5.92157117 -6.91526777 -8.08370035 -9.1097437 -10.04398622 -11.08373523 -12.38659746 -13.52940218 -13.91892017 -12.97862172 -10.65495575 -7.62386177 -4.58678945 -2.52117269 -1.98240237 -3.22295413 -6.10117945 -9.75554908 -13.44109084 -16.00305979 -16.91360074 -15.9269931 -13.3752379 -10.14037793 -7.0198911 -4.98711037 -4.36614129 -5.27766561 -7.13406352 -9.11162529 -10.32622515 -10.40396218 -9.66223699 -8.82604265 -8.72610957 -9.55576474 -10.80411684 -11.91465747 -12.22108046 -11.47306222 -9.99671361 -8.27267774 -6.914672 -6.30338976 -6.63268591 -7.94628179 -9.67737963 -11.39673524 -12.43903476 -12.76636008 -12.24373815 -10.97765831 -9.33264235 -7.79963807 -6.83574136 -6.67447397 -7.27887317 -8.18804238 -9.05273421 -9.59367655 -9.91188532 -10.19058187 -10.49211128 -10.78248477 -10.9363175 -10.80230714 -10.37844684 -9.95600403 -9.75319827 -9.91207185 -10.24032231 -10.34854709 -9.89700104 -8.95783018 -7.679071 -6.59274285 -6.09354304 -6.55424674 -7.77176179 -9.46985585 -11.07664516 -12.16384258 -12.34723896 -11.64205485 -10.3630297 -8.91764517 -7.88694188 -7.56093883 -8.00086864 -9.03142458 -10.26420384 -11.40290321 -12.13545102 -12.29859166 -11.74900557 -10.52135461 -8.88558511 -7.10309961 -5.74671191 -5.27754116 -5.93807325 -7.59617353 -9.82785071 -11.99293515 -13.67207277 -14.43224876 -14.20517576 -12.95019716 -10.7383459 -8.05839094 -5.37228438 -3.57037961 -3.31746687 -4.8440754 -7.86448313 -11.14898215 -13.87965557 -15.03424374 -14.47993737 -12.53539988 -9.68993703 -6.93237225 -5.08116447 -4.77346154 -5.93782289 -8.06877111 -10.3479298 -12.24216616 -13.27309012 -13.52265794 -13.01384972 -11.9352945 -10.43039408 -8.61415473 -6.89676634 -5.63485904 -5.38879741 -6.38438968 -8.40833803 -11.05773747 -13.3136634 -14.59096271 -14.36691226 -12.69425498 -10.1017059 -7.21685749 -4.93740543 -3.68012154 -3.93858643 -5.73477214 -8.66772075 -11.86967368 -14.41233412 -15.26845199 -14.2680555 -11.74094578 -8.51187748 -5.88725032 -4.58066409 -5.07545154 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-14.51058449 -14.15372352 -12.54907717 -10.1204556 -7.21474019 -4.67283394 -3.10321654 -3.16401535 -4.8096438 -7.65746044 -10.91507249 -13.81795643 -15.44112376 -15.32645333 -13.39761347 -10.3268872 -7.31093067 -5.10283549 -4.26243267 -4.78944972 -6.4193754 -8.66184177 -10.76984555 -12.37375703 -13.05922708 -12.79913054 -11.80515712 -10.3755516 -8.95999176 -7.72867246 -7.0784114 -7.13670401 -7.82277103 -8.9287534 -10.1516697 -10.99463753 -11.22071952 -10.74201055 -9.72311326 -8.59910794 -7.79479562 -7.61960041 -8.12215104 -9.05411374 -10.14413781 -10.97978537 -11.41861379 -11.55453997 -11.31779777 -10.6933645 -9.62400607 -8.22194913 -6.70288129 -5.64593687 -5.51223694 -6.525786 -8.60969664 -11.08026272 -13.31297936 -14.71990751 -14.7958245 -13.57846399 -11.55741849 -9.00316366 -6.6191107 -4.78972877 -3.99834813 -4.4919965 -6.08964619 -8.5673718 -11.07941747 -13.04019263 -13.81143011 -13.39701027 -12.06363614 -10.27045989 -8.58571032 -7.28915427 -6.57422463 -6.56804236 -7.19922094 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-8.17367155 -7.56883705 -7.24971002 -7.31013749 -7.67319716 -8.33298937 -9.26141734 -10.2713622 -11.18183016 -11.76280387 -11.8227876 -11.36191746 -10.4402125 -9.26014938 -7.9205537 -6.72336227 -5.9817717 -6.07468497 -7.01259633 -8.58667941 -10.24952409 -11.52001903 -11.891272 -11.29394349 -9.94698736 -8.18253232 -6.74379177 -6.1243304 -6.72912291 -8.36538777 -10.34217078 -11.91382835 -12.3156308 -11.45291909 -9.71046376 -7.742892 -6.36389542 -5.94642045 -6.60549461 -7.94559646 -9.40680751 -10.47336794 -10.75483655 -10.10741637 -8.81018553 -7.55516524 -6.70102378 -6.7492664 -7.75096475 -9.40815843 -11.39265659 -12.9805814 -13.5100881 -12.54644605 -10.1087308 -6.91358198 -3.94958235 -2.36138827 -2.79878216 -5.30886939 -9.33794011 -13.50745339 -16.7179603 -17.70378567 -16.11244839 -12.45191617 -7.57479452 -3.13098976 -0.53829326 -0.57122599 -3.14723617 -7.46467141 -11.77148827 -14.99623258 -16.24869264 -15.44643656 -13.30295252 -10.50530415 -8.02732235 -6.38576974 -5.93690405 -6.59724889 -7.83234179 -8.95466818 -9.47261546 -9.44298557 -9.09209601 -8.86860609 -9.01864355 -9.34361838 -9.6790996 -9.82773198 -9.7077607 -9.35701501 -8.90755253 -8.5844122 -8.57422249 -8.88789829 -9.47533818 -10.12161512 -10.81128522 -11.32646372 -11.56410152 -11.36319758 -10.61239823 -9.44823259 -7.90990298 -6.43764606 -5.37214125 -5.1964851 -6.07542072 -7.87157117 -10.15577635 -12.0594615 -13.19918906 -13.44562654 -13.00817551 -12.13720038 -10.99089623 -9.54134355 -7.99229787 -6.5196441 -5.63969776 -5.58898403 -6.44531278 -7.98991061 -9.67829482 -11.17301155 -12.12190515 -12.45602656 -12.27032845 -11.69489276 -10.87585276 -9.95701377 -9.03952942 -8.1015456 -7.487152 -7.26177716 -7.58568686 -8.43189545 -9.60745619 -10.71606605 -11.43955232 -11.41093186 -10.55999688 -9.15491598 -7.51355452 -6.26159006 -5.92094773 -6.87096827 -9.1282572 -12.03980684 -14.80929538 -16.16634458 -15.55607723 -12.90277382 -8.94812437 -5.22947954 -2.90586454 -2.85082907 -4.85547708 -7.89221515 -10.96082405 -13.0014475 -13.74582231 -13.13041532 -11.64443772 -9.86848055 -8.40412124 -7.42663222 -7.00239215 -6.98947835 -7.27343536 -7.92565934 -8.94623291 -10.28103154 -11.62815031 -12.61955317 -12.91342922 -12.12340654 -10.45791256 -8.2860688 -6.29073387 -4.87325051 -4.60963385 -5.67526999 -7.77445192 -10.50624017 -12.93586078 -14.42504825 -14.45234911 -13.05162984 -10.46997027 -7.56400441 -4.95451849 -3.65231746 -3.99222615 -5.88030801 -8.95979347 -12.24377435 -15.0964687 -16.58262617 -16.39707411 -14.42482011 -11.02431521 -7.24515394 -3.81754873 -1.8235663 -1.60918638 -3.37726485 -6.76563686 -10.75451445 -14.40306982 -16.52141106 -16.72111573 -14.92539019 -11.80328566 -8.15185413 -5.20140238 -3.72322913 -4.06937852 -5.94337893 -8.37093112 -10.77078609 -12.20727528 -12.37654534 -11.37339787 -9.61164796 -7.98696257 -6.96353663 -6.74823914 -7.25399276 -8.2055683 ] INFO 2025-06-26 19:37:15,368 calibrate.py _range_qc_combined_nc():916 [1] navigation_pitch: deleting 680 values found outside of above ranges: [ 2.05444336e+00 8.45947265e-01 -6.48193359e-01 -1.86767578e+00 -2.42797851e+00 -2.16979980e+00 -1.29089355e+00 -2.96630859e-01 4.83398437e-01 9.94262695e-01 1.32934570e+00 1.62048340e+00 1.91711426e+00 2.15332031e+00 2.18627930e+00 1.97204590e+00 1.54357910e+00 9.28344726e-01 1.26342773e-01 -5.21850586e-01 -9.28344726e-01 -8.29467773e-01 -3.13110351e-01 3.90014648e-01 1.04370117e+00 1.46667480e+00 1.48864746e+00 1.16455078e+00 5.21850586e-01 -3.84521484e-01 -1.18652344e+00 -1.71386719e+00 -1.74133301e+00 -1.23596191e+00 -4.88891601e-01 3.51562500e-01 1.12609863e+00 1.71936035e+00 1.99951172e+00 1.87316894e+00 1.41723633e+00 7.80029297e-01 2.19726562e-01 -1.64794922e-02 2.58178711e-01 7.74536132e-01 1.35681152e+00 1.58203125e+00 1.41723633e+00 9.44824218e-01 5.16357422e-01 3.62548828e-01 6.09741211e-01 9.50317382e-01 1.06018066e+00 7.52563476e-01 6.04248047e-02 -7.03125000e-01 -1.44470215e+00 -1.76879883e+00 -1.36779785e+00 -4.61425781e-01 5.87768554e-01 1.31835937e+00 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2.69165039e-01 6.48193359e-01 1.07116699e+00 1.46667480e+00 1.79626465e+00 1.93908691e+00 1.81823730e+00 1.38977051e+00 7.19604492e-01 9.33837890e-02 -3.29589844e-01 -5.32836914e-01 -5.49316406e-01 -5.87768554e-01 -7.69042968e-01 -1.12609863e+00 -1.41723633e+00 -1.37878418e+00 -8.29467773e-01 5.49316406e-02 9.22851562e-01 1.52160644e+00 1.52160644e+00 9.33837890e-01 -3.29589844e-02 -8.89892578e-01 -1.41723633e+00 -1.30737305e+00 -4.99877929e-01 7.19604492e-01 2.05993652e+00 2.88391113e+00 2.96081543e+00 2.23571777e+00 9.83276367e-01 -2.85644531e-01 -1.30737305e+00 -1.67541504e+00 -1.50512695e+00 -9.94262695e-01] INFO 2025-06-26 19:37:15,377 calibrate.py _range_qc_combined_nc():916 [1] navigation_yaw: deleting 680 values found outside of above ranges: [249.2311524 249.07185064 249.07185064 249.19819342 249.35749517 249.35200201 249.24763189 249.05537115 249.13227545 249.51679693 250.11005865 250.60444341 250.75275884 250.50556646 249.92329107 249.25861822 248.52253424 247.9018067 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269.84699712 269.85798345 269.91291509 269.8195313 269.5283936 269.05048833 268.48469243 268.06721196 267.85847173 267.89143071 268.10566411 268.39130864 268.70991216 268.97358403 269.17133794 269.3141602 269.35261235 269.34711919 269.40205083 269.41853032 269.34711919 269.13288579 268.77033696 268.46821294 268.30891118 268.36384282 268.48469243 268.52863774 268.45173345 268.24299321 268.13312993 268.26496587 268.68244634 269.20979009 269.67121587 269.90192876 269.8195313 269.58332524 269.29218755 269.10541997 268.99006352 268.87470708 268.7648438 268.6275147 268.48469243 268.49567876 268.63300786 268.7648438 268.88020024 269.039502 269.30317387 269.61079106 269.8195313 269.79755864 269.46247563 268.84724126 268.14411626 267.75959477 267.84199224 268.336377 268.96809087 269.55036626 269.78657231 269.63825688 269.18781743 268.61652837 268.13312993 267.86945806 267.86396489 268.03974614 268.22651372 268.35285649 268.4737061 268.65498052 268.85273442 268.96809087 268.92963872 268.62202153 268.13312993 267.70466313 267.5563477 267.73762212 268.1990479 268.67695317 269.03400884 269.14387212 269.05048833 268.83076177 268.42426763 267.82551274 267.17182622 266.66645513 266.5181397 266.7927979 267.31464849 267.79255376 268.08918462 268.17707524 268.18256841 268.28693852 268.57807622 268.84724126 268.98457036 268.84174809 268.53413091 268.28144536 268.19355473 268.27045903 268.31440434 268.28144536 268.10566411 267.86396489 267.79255376 267.96284184 268.34736333 268.71540532 268.89667973 268.83076177 268.60554204 268.30341802 268.13312993 268.2594727 268.50666509] INFO 2025-06-26 19:37:15,386 calibrate.py _range_qc_combined_nc():916 [1] navigation_posx: deleting 680 values found outside of above ranges: [2225826.21238455 2225826.21238455 2225826.21016412 2225826.2101641 2225826.2101641 2225826.22560518 2225826.24104623 2225826.25648729 2225826.27192837 2225826.29674169 2225826.32155501 2225826.34636835 2225826.37118167 2225826.39599499 2225826.42080834 2225826.44562166 2225826.47043497 2225826.46165747 2225826.45287997 2225826.44410247 2225826.43532497 2225826.42654747 2225826.41776997 2225826.40899247 2225826.44559271 2225826.48219294 2225826.51879323 2225826.55539347 2225826.5919937 2225826.62859399 2225826.66519423 2225826.6683365 2225826.67147878 2225826.67462106 2225826.67776334 2225826.68090562 2225826.68404789 2225826.68719017 2225826.69033245 2225826.71911461 2225826.74789678 2225826.77667898 2225826.80546114 2225826.8342433 2225826.8630255 2225826.89180767 2225826.86842198 2225826.84503627 2225826.82165059 2225826.7982649 2225826.77487919 2225826.75149351 2225826.72810782 2225826.70472211 2225826.72219113 2225826.73966015 2225826.75712919 2225826.77459821 2225826.79206723 2225826.80953627 2225826.82700529 2225826.81747282 2225826.80794036 2225826.79840789 2225826.78887542 2225826.77934296 2225826.7698105 2225826.76027803 2225826.79323865 2225826.82619927 2225826.85915993 2225826.89212055 2225826.92508117 2225826.95804183 2225826.99100245 2225827.02396306 2225827.03765784 2225827.0513526 2225827.06504735 2225827.07874213 2225827.09243688 2225827.10613164 2225827.11982642 2225827.13412218 2225827.14841794 2225827.16271372 2225827.17700948 2225827.19130524 2225827.20560102 2225827.21989679 2225827.23419255 2225827.23117025 2225827.22814796 2225827.22512567 2225827.22210337 2225827.21908108 2225827.21605879 2225827.2130365 2225827.21964947 2225827.22626245 2225827.23287544 2225827.23948842 2225827.2461014 2225827.25271438 2225827.25932736 2225827.26469911 2225827.27007086 2225827.2754426 2225827.28081435 2225827.2861861 2225827.29155784 2225827.29692959 2225827.30230134 2225827.32590166 2225827.34950198 2225827.37310234 2225827.39670266 2225827.42030298 2225827.44390333 2225827.46750365 2225827.47159337 2225827.47568309 2225827.47977281 2225827.48386253 2225827.48795225 2225827.49204197 2225827.49613169 2225827.50022141 2225827.51121494 2225827.52220846 2225827.533202 2225827.54419553 2225827.55518907 2225827.56618259 2225827.57717612 2225827.59586486 2225827.61455359 2225827.63324231 2225827.65193106 2225827.67061978 2225827.6893085 2225827.70799725 2225827.73251508 2225827.75703291 2225827.78155076 2225827.80606859 2225827.83058642 2225827.85510427 2225827.8796221 2225827.90413993 2225827.91528493 2225827.92642992 2225827.93757491 2225827.94871991 2225827.95986489 2225827.97100988 2225827.98215488 2225828.00204189 2225828.02192891 2225828.04181594 2225828.06170295 2225828.08158996 2225828.101477 2225828.12136401 2225828.14125102 2225828.15200144 2225828.16275184 2225828.17350224 2225828.18425265 2225828.19500305 2225828.20575345 2225828.21650387 2225828.21929315 2225828.22208242 2225828.22487171 2225828.22766099 2225828.23045026 2225828.23323955 2225828.23602882 2225828.27265635 2225828.30928391 2225828.34591144 2225828.38253896 2225828.41916653 2225828.45579405 2225828.49242157 2225828.52904914 2225828.54124806 2225828.55344699 2225828.56564592 2225828.57784485 2225828.59004377 2225828.60224271 2225828.61444164 2225828.62992027 2225828.64539892 2225828.66087755 2225828.67635618 2225828.69183484 2225828.70731347 2225828.7227921 2225828.73827075 2225828.77076539 2225828.80326006 2225828.83575469 2225828.86824933 2225828.900744 2225828.93323864 2225828.96573327 2225828.99836933 2225829.03100535 2225829.06364137 2225829.09627742 2225829.12891344 2225829.16154946 2225829.19418552 2225829.19225241 2225829.1903193 2225829.18838619 2225829.18645308 2225829.18451996 2225829.18258685 2225829.18065374 2225829.17872063 2225829.2069856 2225829.23525054 2225829.26351548 2225829.29178045 2225829.32004538 2225829.34831032 2225829.37657529 2225829.39225642 2225829.40793754 2225829.42361869 2225829.43929981 2225829.45498094 2225829.47066208 2225829.48634321 2225829.50202433 2225829.51706749 2225829.53211064 2225829.54715378 2225829.56219694 2225829.57724009 2225829.59228323 2225829.60732639 2225829.64110185 2225829.67487732 2225829.70865282 2225829.74242828 2225829.77620374 2225829.80997925 2225829.84375471 2225829.86555822 2225829.88736175 2225829.90916527 2225829.93096878 2225829.95277231 2225829.97457582 2225829.99637933 2225830.01818287 2225830.04106431 2225830.06394575 2225830.08682723 2225830.10970867 2225830.13259011 2225830.15547158 2225830.17835302 2225830.18527882 2225830.19220463 2225830.19913043 2225830.20605624 2225830.21298204 2225830.21990785 2225830.22683365 2225830.23375946 2225830.25928415 2225830.28480887 2225830.31033357 2225830.33585826 2225830.36138299 2225830.38690768 2225830.41243238 2225830.40947156 2225830.40651075 2225830.40354994 2225830.40058912 2225830.39762831 2225830.3946675 2225830.39170668 2225830.41394552 2225830.43618437 2225830.45842324 2225830.48066209 2225830.50290093 2225830.5251398 2225830.54737865 2225830.56961749 2225830.56263228 2225830.55564708 2225830.54866187 2225830.54167666 2225830.53469146 2225830.52770626 2225830.52072105 2225830.54768542 2225830.5746498 2225830.60161421 2225830.62857859 2225830.65554297 2225830.68250738 2225830.70947176 2225830.73643614 2225830.75007929 2225830.76372242 2225830.77736556 2225830.79100871 2225830.80465184 2225830.81829497 2225830.83193812 2225830.84862927 2225830.86532041 2225830.88201158 2225830.89870272 2225830.91539387 2225830.93208503 2225830.94877617 2225830.9586338 2225830.96849143 2225830.97834905 2225830.98820667 2225830.9980643 2225831.00792192 2225831.01777955 2225831.02763718 2225831.06059772 2225831.09355826 2225831.12651885 2225831.15947939 2225831.19243993 2225831.22540051 2225831.25836105 2225831.25588725 2225831.25341345 2225831.25093965 2225831.24846584 2225831.24599204 2225831.24351824 2225831.24104444 2225831.23857064 2225831.27512416 2225831.31167774 2225831.34823127 2225831.3847848 2225831.42133837 2225831.4578919 2225831.49444543 2225831.49327762 2225831.49210982 2225831.49094202 2225831.48977421 2225831.48860641 2225831.48743861 2225831.48627081 2225831.52879232 2225831.57131383 2225831.6138354 2225831.65635691 2225831.69887843 2225831.74139999 2225831.78392151 2225831.82644302 2225831.8288311 2225831.83121917 2225831.83360725 2225831.83599533 2225831.83838341 2225831.84077148 2225831.84315956 2225831.88428122 2225831.92540289 2225831.9665246 2225832.00764626 2225832.04876792 2225832.08988963 2225832.1310113 2225832.17213296 2225832.20134233 2225832.23055166 2225832.259761 2225832.28897037 2225832.3181797 2225832.34738903 2225832.3765984 2225832.39134697 2225832.40609553 2225832.42084411 2225832.43559267 2225832.45034124 2225832.46508982 2225832.47983838 2225832.50837233 2225832.53690631 2225832.56544025 2225832.5939742 2225832.62250818 2225832.65104212 2225832.67957607 2225832.70811005 2225832.72526745 2225832.74242486 2225832.75958228 2225832.77673969 2225832.79389709 2225832.81105452 2225832.82821192 2225832.8566306 2225832.88504924 2225832.91346789 2225832.94188657 2225832.97030521 2225832.99872386 2225833.02714253 2225833.05556118 2225833.07074115 2225833.08592114 2225833.10110111 2225833.11628108 2225833.13146106 2225833.14664103 2225833.161821 2225833.17827479 2225833.19472856 2225833.21118233 2225833.22763612 2225833.24408989 2225833.26054366 2225833.27699745 2225833.30309965 2225833.32920185 2225833.35530408 2225833.38140628 2225833.40750848 2225833.43361071 2225833.45971291 2225833.48581511 2225833.51600906 2225833.54620297 2225833.57639689 2225833.60659084 2225833.63678475 2225833.66697866 2225833.69717261 2225833.72612924 2225833.75508587 2225833.78404253 2225833.81299915 2225833.84195578 2225833.87091244 2225833.89986907 2225833.9288257 2225833.96395068 2225833.99907563 2225834.03420057 2225834.06932555 2225834.1044505 2225834.13957544 2225834.17470042 2225834.17428815 2225834.17387588 2225834.1734636 2225834.17305133 2225834.17263906 2225834.17222678 2225834.17181451 2225834.19851735 2225834.22522021 2225834.25192305 2225834.27862589 2225834.30532876 2225834.33203159 2225834.35873443 2225834.3854373 2225834.41050634 2225834.43557538 2225834.46064445 2225834.48571348 2225834.51078255 2225834.53585159 2225834.56092063 2225834.60107454 2225834.6412284 2225834.68138226 2225834.72153617 2225834.76169003 2225834.8018439 2225834.84199781 2225834.88215167 2225834.91373345 2225834.94531527 2225834.97689706 2225835.00847884 2225835.04006066 2225835.07164244 2225835.10322423 2225835.15089192 2225835.19855955 2225835.24622718 2225835.29389487 2225835.3415625 2225835.38923014 2225835.43689783 2225835.49041357 2225835.54392931 2225835.59744512 2225835.65096086 2225835.70715239 2225835.76066819 2225835.81418394 2225835.86769968 2225835.8681877 2225835.86867572 2225835.86916374 2225835.86965176 2225835.87013978 2225835.8706278 2225835.87111583 2225835.89770508 2225835.92429436 2225835.95088362 2225835.97747287 2225836.00406216 2225836.03065141 2225836.05724067 2225836.08382995 2225836.09534604 2225836.10686212 2225836.11837823 2225836.12989431 2225836.1414104 2225836.1529265 2225836.16444259 2225836.21331714 2225836.26219175 2225836.31106631 2225836.35994087 2225836.40881548 2225836.45769003 2225836.50656459 2225836.54818398 2225836.58980333 2225836.63142268 2225836.67304207 2225836.71466142 2225836.75628076 2225836.79790016 2225836.8395195 2225836.86096225 2225836.88240502 2225836.90384777 2225836.92529052 2225836.94673329 2225836.96817603 2225836.98961878 2225837.03336813 2225837.07711744 2225837.12086674 2225837.16461609 2225837.20836539 2225837.2521147 2225837.29586405 2225837.33961335 2225837.38729287 2225837.43497244 2225837.48265195 2225837.53033147 2225837.57801104 2225837.62569055 2225837.67337007 2225837.70917429 2225837.74497847 2225837.78078265 2225837.81658687 2225837.85239105 2225837.88819523 2225837.92399945 2225837.96506017 2225838.00612089 2225838.04718166 2225838.08824238 2225838.1293031 2225838.17036387 2225838.21142459 2225838.25248536 2225838.28018658 2225838.30788779 2225838.33558904 2225838.36329026 2225838.39099147 2225838.41869272 2225838.44639394 2225838.48328254 2225838.52017118 2225838.55705977 2225838.59394837 2225838.63083701 2225838.66772561 2225838.70461421 2225838.74150285 2225838.74228434 2225838.74306583 2225838.74384732 2225838.74462881 2225838.7454103 2225838.74619179 2225838.74697328 2225838.75135051 2225838.75572775 2225838.76010498 2225838.76448222 2225838.76885945 2225838.77323669 2225838.77761392 2225838.78607223 2225838.79453053 2225838.80298883 2225838.81144714 2225838.81990544 2225838.82836374 2225838.83682205 2225838.84528035 2225838.89309522 2225838.94091016 2225838.98872503 2225839.03653991 2225839.08435484 2225839.13216972 2225839.1799846 2225839.21720625 2225839.25442786 2225839.29164947 2225839.32887112 2225839.36609273 2225839.40331434 2225839.440536 2225839.47775761 2225839.51690194 2225839.55604633 2225839.59519067 2225839.634335 2225839.67347939 2225839.71262373 2225839.75176807 2225839.81817274 2225839.88457733 2225839.95098192 2225840.0173866 2225840.08379119 2225840.15019578 2225840.21660046 2225840.21954891 2225840.22249736 2225840.22544581 2225840.22839427 2225840.23134272 2225840.23429117 2225840.23723963 2225840.24018808 2225840.2737918 2225840.30739552 2225840.34099928 2225840.37460299 2225840.40820671 2225840.44181047 2225840.47541419 2225840.49445748 2225840.5135008 2225840.53254409 2225840.55158738 2225840.5706307 ] INFO 2025-06-26 19:37:15,395 calibrate.py _range_qc_combined_nc():916 [1] navigation_posy: deleting 680 values found outside of above ranges: [871519.49831536 871519.49831536 871519.47084778 871519.47084783 871519.47084783 871519.42700102 871519.38315426 871519.3393075 871519.29546069 871519.29506651 871519.29467233 871519.29427815 871519.29388396 871519.29348978 871519.2930956 871519.29270142 871519.29230724 871519.24439445 871519.19648173 871519.148569 871519.10065622 871519.05274349 871519.00483077 871518.95691798 871518.9511589 871518.94539982 871518.93964073 871518.93388165 871518.92812256 871518.92236347 871518.91660439 871518.87240722 871518.82820999 871518.78401282 871518.73981564 871518.69561841 871518.65142124 871518.60722407 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55.99628602 55.99628632 55.99628662 55.99628693 55.99628715 55.99628737 55.99628758 55.9962878 55.99628802] INFO 2025-06-26 19:37:15,427 calibrate.py _range_qc_combined_nc():916 [1] navigation_longitude: deleting 680 values found outside of above ranges: [-107.4240952 -107.4240952 -107.42409563 -107.42409563 -107.42409563 -107.42409625 -107.42409687 -107.42409749 -107.42409812 -107.42409803 -107.42409795 -107.42409787 -107.42409779 -107.4240977 -107.42409762 -107.42409754 -107.42409746 -107.42409823 -107.424099 -107.42409977 -107.42410054 -107.42410131 -107.42410209 -107.42410286 -107.42410282 -107.42410277 -107.42410273 -107.42410269 -107.42410265 -107.42410261 -107.42410257 -107.42410324 -107.42410391 -107.42410458 -107.42410525 -107.42410592 -107.42410659 -107.42410727 -107.42410794 -107.42410862 -107.42410931 -107.42411 -107.42411068 -107.42411137 -107.42411206 -107.42411274 -107.42411342 -107.42411409 -107.42411477 -107.42411544 -107.42411612 -107.42411679 -107.42411747 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-107.4242222 -107.42422172 -107.42422123 -107.42422074 -107.4242207 -107.42422066 -107.42422062 -107.42422057 -107.42422053 -107.42422049 -107.42422045 -107.42422049 -107.42422053 -107.42422057 -107.4242206 -107.42422064 -107.42422068 -107.42422072 -107.42422076 -107.42422081 -107.42422086 -107.42422091 -107.42422096 -107.42422101 -107.42422106 -107.42422112 -107.42422142 -107.42422173 -107.42422203 -107.42422233 -107.42422264 -107.42422294 -107.42422325 -107.42422298 -107.42422272 -107.42422245 -107.42422218 -107.42422192 -107.42422165 -107.42422138 -107.42422112 -107.4242211 -107.42422108 -107.42422106 -107.42422104 -107.42422102 -107.424221 -107.42422099 -107.42422133 -107.42422168 -107.42422202 -107.42422237 -107.42422271] INFO 2025-06-26 19:37:15,441 calibrate.py _range_qc_combined_nc():936 [1] Done range checking navigation INFO 2025-06-26 19:37:15,444 calibrate.py _gps_process():2069 [1] Removing points outside of Monterey Bay for 2013.227.00/gps.nc INFO 2025-06-26 19:37:15,446 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('gps_latitude', Range(min=36, max=37)), ('gps_longitude', Range(min=-122.1, max=-121.7))] INFO 2025-06-26 19:37:15,446 calibrate.py _range_qc_combined_nc():916 [1] gps_time: deleting 72 values found outside of above ranges: ['2013-08-15T16:21:58.197694464' '2013-08-15T16:21:59.197626112' '2013-08-15T16:22:00.197557760' '2013-08-15T16:22:01.207488512' '2013-08-15T16:22:02.197420544' '2013-08-15T16:22:03.197352192' '2013-08-15T16:22:04.197283840' '2013-08-15T16:22:05.207214336' '2013-08-15T16:22:06.197146624' '2013-08-15T16:22:07.197078272' '2013-08-15T16:22:08.197009664' '2013-08-15T16:22:11.196804096' '2013-08-15T16:22:12.206734848' '2013-08-15T16:22:13.206666496' '2013-08-15T16:22:14.196598528' '2013-08-15T16:22:17.206392576' '2013-08-15T16:22:18.196324608' '2013-08-15T16:22:19.196256256' '2013-08-15T16:22:20.196187648' '2013-08-15T16:22:21.196119040' '2013-08-15T16:22:23.205981440' '2013-08-15T16:22:24.205913088' '2013-08-15T16:22:25.205844480' '2013-08-15T16:22:26.205775872' '2013-08-15T16:22:29.205570560' '2013-08-15T16:22:30.195502848' '2013-08-15T16:22:31.195433984' '2013-08-15T16:22:32.205364992' '2013-08-15T16:22:35.205159424' '2013-08-15T16:22:36.205091072' '2013-08-15T16:22:37.205022464' '2013-08-15T16:22:38.194954752' '2013-08-15T16:22:40.204817152' '2013-08-15T16:22:41.204748288' '2013-08-15T16:22:42.194680576' '2013-08-15T16:22:43.204611584' '2013-08-15T16:22:44.204542976' '2013-08-15T16:22:45.204474368' '2013-08-15T16:22:46.194406656' '2013-08-15T16:22:47.194338048' '2013-08-15T16:22:48.204269056' '2013-08-15T16:22:50.194132480' '2013-08-15T16:22:52.203994880' '2013-08-15T16:22:53.203926528' '2013-08-15T16:22:54.193858560' '2013-08-15T16:22:55.193790208' '2013-08-15T16:22:56.193721600' '2013-08-15T16:22:59.203515648' '2013-08-15T16:23:00.203446784' '2013-08-15T16:23:01.203378432' '2013-08-15T16:23:02.193310720' '2013-08-15T16:23:05.203104512' '2013-08-15T16:23:06.193036544' '2013-08-15T16:23:07.192968192' '2013-08-15T16:23:08.202898944' '2013-08-15T16:23:10.192762624' '2013-08-15T16:23:11.192694272' '2013-08-15T16:23:12.202625024' '2013-08-15T16:23:13.202556416' '2013-08-15T16:23:14.192488704' '2013-08-15T16:23:17.202282496' '2013-08-15T16:23:18.192214784' '2013-08-15T16:23:19.192146176' '2013-08-15T16:23:20.202076928' '2013-08-15T16:23:23.201871360' '2013-08-15T16:23:24.201803008' '2013-08-15T16:23:25.201734656' '2013-08-15T16:23:26.201665792' '2013-08-15T16:23:29.201460480' '2013-08-15T16:23:30.201391872' '2013-08-15T16:23:31.201323520' '2013-08-15T16:23:32.201255168'] INFO 2025-06-26 19:37:15,449 calibrate.py _range_qc_combined_nc():916 [1] gps_latitude: deleting 72 values found outside of above ranges: [55.26302783 55.29266633 55.32232483 55.35188783 55.38145967 55.41102917 55.4405915 55.470153 55.49970333 55.52923417 55.5587525 55.64731317 55.67679033 55.70624533 55.73569833 55.82401317 55.85341833 55.88282117 55.912205 55.94158533 55.99617167 55.9907765 55.985361 55.9799475 56.176201 56.20547883 56.23473817 56.2639875 56.35166783 56.38086333 56.410038 56.43922617 56.49754633 56.5266875 56.55581983 56.58493617 56.61401867 56.64312683 56.67220917 56.70129283 56.73035 56.78848283 56.84655483 56.87553217 56.90450717 56.9334695 56.9623795 57.04919117 57.078091 57.1069855 57.13587 57.2224205 57.25126333 57.28008483 57.30887783 57.36643667 57.395193 57.4239315 57.45267983 57.4814005 57.56748583 57.59614933 57.62479733 57.653441 57.73928667 57.76787267 57.79645017 57.82500583 57.9105965 57.93910617 57.96760567 57.99605733] INFO 2025-06-26 19:37:15,451 calibrate.py _range_qc_combined_nc():916 [1] gps_longitude: deleting 72 values found outside of above ranges: [-108.3179825 -108.28271733 -108.2473565 -108.21204983 -108.17665617 -108.14119433 -108.10567283 -108.07008783 -108.03444867 -107.99876067 -107.96301583 -107.85536483 -107.81939167 -107.78337533 -107.7472895 -107.63866567 -107.60235633 -107.565981 -107.529554 -107.49305717 -107.424769 -107.429023 -107.43330483 -107.43758917 -107.19902933 -107.16201383 -107.12494217 -107.08781067 -106.976057 -106.93869517 -106.9012865 -106.86378367 -106.78862983 -106.7509665 -106.71323617 -106.675452 -106.63763917 -106.59971383 -106.56174383 -106.523697 -106.48561317 -106.4091715 -106.33250533 -106.29413083 -106.25568517 -106.2171805 -106.178677 -106.06254583 -106.02372767 -105.98483733 -105.9458845 -105.82868567 -105.78947067 -105.750203 -105.71089667 -105.63207183 -105.59256883 -105.553006 -105.51335267 -105.47365483 -105.35417067 -105.314222 -105.27421167 -105.23412367 -105.11347817 -105.07314017 -105.032726 -104.99226117 -104.8704605 -104.82972267 -104.78891417 -104.7480875 ] INFO 2025-06-26 19:37:15,455 calibrate.py _range_qc_combined_nc():936 [1] Done range checking gps INFO 2025-06-26 19:37:15,455 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 19:37:15,457 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 19:37:16,055 calibrate.py _nudge_pos():1806 [1] 94: 0.010 0.0008009 -0.0003721 870 2.90 40.947 -23.802 2013-08-15T14:53:03.183168256 INFO 2025-06-26 19:37:16,074 calibrate.py _nudge_pos():1806 [1] 96: 0.010 0.0000149 0.0000105 80 0.26 8.367 7.363 2013-08-15T14:53:20.182003712 INFO 2025-06-26 19:37:16,656 calibrate.py _nudge_pos():1806 [1] 158: 0.200 0.0082710 -0.0056781 9029 30.09 40.712 -34.963 2013-08-15T15:24:26.984119040 INFO 2025-06-26 19:37:17,158 calibrate.py _nudge_pos():1806 [1] 212: 0.200 0.0056382 -0.0076162 9604 32.01 26.096 -44.089 2013-08-15T15:57:20.988890368 WARNING 2025-06-26 19:37:17,696 calibrate.py _nudge_pos():1789 [1] abs(end_sec_diff) (136.010682624) > max_sec_diff_at_end (10) INFO 2025-06-26 19:37:17,696 calibrate.py _nudge_pos():1794 [1] Overriding end_lon_diff (0.002767761305562999) and end_lat_diff (-0.005552437305190949) by setting them to 0 INFO 2025-06-26 19:37:17,698 calibrate.py _nudge_pos():1806 [1] 270: 136.011 0.0000000 0.0000000 7225 24.08 17.032 -42.727 2013-08-15T16:22:23.185982976 INFO 2025-06-26 19:37:18,216 calibrate.py _nudge_pos():1806 [1] 326: 0.020 0.0009909 -0.0030570 3925 13.08 11.226 -43.308 2013-08-15T16:38:39.179122688 INFO 2025-06-26 19:37:49,331 calibrate.py _nudge_pos():1862 [1] 3625: - - - 3 0.01 - - INFO 2025-06-26 19:37:49,331 calibrate.py _nudge_pos():1868 [1] Points in final series = 48764 INFO 2025-06-26 19:37:49,850 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 19:37:50,229 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 35 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 19:37:50,521 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 35 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 19:37:50,523 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2013.227.00/ctd1.nc INFO 2025-06-26 19:37:50,524 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 19:37:50,524 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 19:37:50,525 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 19:37:50,890 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 35 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 19:37:51,186 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 35 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 19:37:51,188 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2013.227.00/ctd2.nc INFO 2025-06-26 19:37:51,189 calibrate.py _range_qc_combined_nc():898 [1] Setting 30 ctd2_salinity values to NaN INFO 2025-06-26 19:37:51,190 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 19:37:51,190 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 19:37:51,210 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 19:37:51,625 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76] INFO 2025-06-26 19:37:51,715 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -2 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 19:38:00,688 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no time coordinate - likely an incomplete lopc.nc file in missionlogs/2013.227.00 ERROR 2025-06-26 19:38:00,688 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2013.227.00 INFO 2025-06-26 19:38:00,729 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2013.227.00/dorado_2013.227.00_cal.nc INFO 2025-06-26 19:38:00,821 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 19:38:00,827 process.py align():251 [1] Alignment steps for 2013.227.00 INFO 2025-06-26 19:38:00,860 align.py process_cal():139 [1] Processing dorado_2013.227.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2013.227.00 INFO 2025-06-26 19:38:00,877 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 19:38:00,880 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 4.93 INFO 2025-06-26 19:38:00,919 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 19:38:00,922 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 4.93 INFO 2025-06-26 19:38:00,961 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 19:38:00,964 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 4.93 INFO 2025-06-26 19:38:00,987 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 19:38:00,987 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 19:38:01,002 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 19:38:01,005 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 4.93 INFO 2025-06-26 19:38:01,042 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2013.227.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:38:01,045 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:38:01,080 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2013.227.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:38:01,083 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:38:01,118 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2013.227.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:38:01,121 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:38:01,154 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2013.227.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:38:01,157 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:38:01,193 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2013.227.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:38:01,197 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:38:01,233 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2013.227.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:38:01,236 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:38:01,271 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2013.227.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:38:01,274 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:38:01,308 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2013.227.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:38:01,311 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:38:01,345 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2013.227.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:38:01,348 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:38:01,381 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2013.227.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:38:01,384 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:38:01,418 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2013.227.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:38:01,421 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:38:01,454 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2013.227.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:38:01,457 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:38:01,491 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2013.227.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:38:01,494 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:38:01,527 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2013.227.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:38:01,530 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:38:01,564 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2013.227.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:38:01,568 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:38:01,604 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2013.227.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:38:01,607 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:38:01,641 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2013.227.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:38:01,644 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:38:01,679 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2013.227.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:38:01,682 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:38:01,718 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2013.227.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:38:01,722 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:38:01,756 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2013.227.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:38:01,759 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:38:01,795 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2013.227.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:38:01,798 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:38:01,832 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2013.227.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:38:01,835 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:38:01,878 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.93 INFO 2025-06-26 19:38:01,910 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.93 INFO 2025-06-26 19:38:01,943 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.93 INFO 2025-06-26 19:38:01,977 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 0.98 INFO 2025-06-26 19:38:02,018 align.py process_cal():249 [1] biolume_avg_biolume: instrument_sample_rate_hz = 0.98 INFO 2025-06-26 19:38:02,096 align.py process_cal():249 [1] biolume_raw: instrument_sample_rate_hz = 58.99 INFO 2025-06-26 19:38:02,487 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 19:38:02,518 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2013.227.00/dorado_2013.227.00_align.nc INFO 2025-06-26 19:38:02,615 align.py write_netcdf():342 [1] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 19:38:02,618 process.py resample():273 [1] Resampling steps for 2013.227.00 INFO 2025-06-26 19:38:02,618 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 19:38:02,648 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2013.227.00/dorado_2013.227.00_align.nc mission netCDF file INFO 2025-06-26 19:38:02,653 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2013.227.00/dorado_2013.227.00_align.nc mission netCDF file INFO 2025-06-26 19:38:02,655 resample.py get_mission_start_end():1145 [1] navigation: 2013-08-15T14:49:13.598895872 to 2013-08-15T17:34:14.780618496 (0 days 00:00:00.079994368 before mission_end) INFO 2025-06-26 19:38:02,656 resample.py get_mission_start_end():1145 [1] hs2 : 2013-08-15T14:48:43.410963712 to 2013-08-15T17:34:14.700623872 (0 days 00:00:00.159988992 before mission_end) INFO 2025-06-26 19:38:02,658 resample.py get_mission_start_end():1145 [1] ctd1 : 2013-08-15T14:49:14.458836736 to 2013-08-15T17:34:14.730621696 (0 days 00:00:00.129991168 before mission_end) INFO 2025-06-26 19:38:02,659 resample.py get_mission_start_end():1145 [1] ctd2 : 2013-08-15T14:49:13.888876032 to 2013-08-15T17:34:14.650627328 (0 days 00:00:00.209985536 before mission_end) INFO 2025-06-26 19:38:02,660 resample.py get_mission_start_end():1145 [1] isus : 2013-08-15T14:49:53.146186496 to 2013-08-15T17:34:14.620629248 (0 days 00:00:00.239983616 before mission_end) INFO 2025-06-26 19:38:02,662 resample.py get_mission_start_end():1145 [1] biolume : 2013-08-15T14:48:36.391410432 to 2013-08-15T17:34:14.030635520 (0 days 00:00:00.829977344 before mission_end) INFO 2025-06-26 19:38:02,663 resample.py get_mission_start_end():1145 [1] tailcone : 2013-08-15T14:48:37.751351552 to 2013-08-15T17:34:14.860612864 (0 days 00:00:00 before mission_end) INFO 2025-06-26 19:38:02,664 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2013.227.00/dorado_2013.227.00_align.nc mission netCDF file INFO 2025-06-26 19:38:02,664 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 19:38:02,786 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 19:38:02,807 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 19:38:02,828 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 19:38:02,849 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 19:38:02,869 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 19:38:02,888 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 19:38:02,908 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 19:38:02,927 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 19:38:02,945 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 19:38:02,963 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 19:38:02,981 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 19:38:02,999 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 19:38:03,017 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 19:38:03,034 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 19:38:03,052 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 19:38:03,069 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 19:38:03,087 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 19:38:03,107 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 19:38:03,125 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 19:38:03,144 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 19:38:03,163 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 19:38:03,181 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 19:38:03,199 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 19:38:03,218 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 19:38:03,229 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 19:38:03,241 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 19:38:03,252 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 19:38:03,262 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 19:38:03,271 resample.py resample_variable():1031 [1] Resampling biolume_avg_biolume with frequency 1S following 3 point median filter INFO 2025-06-26 19:38:03,275 resample.py set_proxy_parameters():520 [1] Setting biolume proxy parameters for period4 INFO 2025-06-26 19:38:03,275 resample.py add_biolume_proxies():549 [1] Adding biolume proxy variables computed from biolume_raw INFO 2025-06-26 19:38:03,627 resample.py add_biolume_proxies():595 [1] Using flash_threshold = 1.0000e+11 INFO 2025-06-26 19:38:03,691 resample.py add_biolume_proxies():638 [1] Computing flashes per liter: nbflash_high, nbflash_low INFO 2025-06-26 19:38:03,728 resample.py add_biolume_proxies():666 [1] Saving flash intensity: biolume_intflash - the upper bound of the background envelope INFO 2025-06-26 19:38:03,744 resample.py add_biolume_proxies():683 [1] Saving Background bioluminescence (dinoflagellates proxy) INFO 2025-06-26 19:38:03,759 resample.py select_nighttime_bl_raw():432 [1] No sunset or sunrise found during this mission. INFO 2025-06-26 19:38:03,759 resample.py add_biolume_proxies():694 [1] No nighttime_bl_raw data to compute adinos, diatoms, hdinos proxies INFO 2025-06-26 19:38:03,786 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 19:38:03,951 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2013.227.00/dorado_2013.227.00_1S.nc INFO 2025-06-26 19:38:05,713 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-26 19:38:16,663 create_products.py gulper_odv():522 [1] Wrote 10 Gulper data lines to /data/auv_data/dorado/missionodvs/2013.227.00/dorado_2013.227.00_1S_Gulper.txt INFO 2025-06-26 19:38:16,664 process.py archive():337 [1] Archiving steps for 2013.227.00 INFO 2025-06-26 19:38:16,664 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2013.227.00/dorado_2013.227.00, BASE_PATH = /data/auv_data INFO 2025-06-26 19:38:16,666 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2013.227.00/dorado_2013.227.00 files to /Volumes/AUVCTD/surveys/2013/netcdf INFO 2025-06-26 19:38:16,666 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2013/netcdf/dorado_2013.227.00_1S.nc INFO 2025-06-26 19:38:16,680 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.227.00/dorado_2013.227.00_1S.nc /Volumes/AUVCTD/surveys/2013/netcdf done. INFO 2025-06-26 19:38:16,682 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2013/netcdf/dorado_2013.227.00_cal.nc INFO 2025-06-26 19:38:16,751 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.227.00/dorado_2013.227.00_cal.nc /Volumes/AUVCTD/surveys/2013/netcdf done. INFO 2025-06-26 19:38:16,752 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2013/netcdf/dorado_2013.227.00_align.nc INFO 2025-06-26 19:38:16,851 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.227.00/dorado_2013.227.00_align.nc /Volumes/AUVCTD/surveys/2013/netcdf done. INFO 2025-06-26 19:38:16,867 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.227.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2013/2013227/2013.227.00 done. INFO 2025-06-26 19:38:16,882 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.227.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2013/2013227/2013.227.00 done. INFO 2025-06-26 19:38:16,887 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.227.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2013/2013227/2013.227.00 done. INFO 2025-06-26 19:38:16,900 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.227.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2013/2013227/2013.227.00 done. INFO 2025-06-26 19:38:16,936 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.227.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2013/2013227/2013.227.00 done. INFO 2025-06-26 19:38:16,942 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.227.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2013/2013227/2013.227.00 done. INFO 2025-06-26 19:38:16,957 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.227.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2013/2013227/2013.227.00 done. INFO 2025-06-26 19:38:16,970 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.227.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2013/2013227/2013.227.00 done. INFO 2025-06-26 19:38:16,998 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.227.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2013/2013227/2013.227.00 done. INFO 2025-06-26 19:38:17,003 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.227.00/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2013/2013227/2013.227.00 done. INFO 2025-06-26 19:38:17,003 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 19:38:17,004 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2013/odv/dorado_2013.227.00_1S_Gulper.txt INFO 2025-06-26 19:38:17,008 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2013.227.00/dorado_2013.227.00_1S_Gulper.txt /Volumes/AUVCTD/surveys/2013/odv done. INFO 2025-06-26 19:38:17,008 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.227.00/dorado_2013.227.00_processing.log /Volumes/AUVCTD/surveys/2013/netcdf