INFO 2025-06-26 19:29:39,215 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 19:29:39,215 process.py process_mission():434 [1] dorado_info[mission]["comment"] = ECOHAB - CANON March 2013 - Tiny test mission with change in parosci.log format. Nav data on deck, did not process - ctdToUse = ctd1 INFO 2025-06-26 19:29:39,215 process.py process_mission():449 [1] Processing CANON March 2013 mission 2013.079.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 19:29:39,215 process.py download_process():165 [1] Download and processing steps for 2013.079.00 INFO 2025-06-26 19:29:39,215 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2013/2013079/2013.079.00 INFO 2025-06-26 19:29:39,215 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2013/2013079/2013.079.00 to /data/auv_data/dorado/missionlogs/2013.079.00 INFO 2025-06-26 19:29:39,926 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2013.079.00 INFO 2025-06-26 19:29:39,926 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2013.079.00/ctdDriver.log (208614 bytes) INFO 2025-06-26 19:29:39,948 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2013.079.00/ctdDriver2.log (208703 bytes) INFO 2025-06-26 19:29:39,969 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2013.079.00/gps.log (42548 bytes) INFO 2025-06-26 19:29:39,980 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2013.079.00/hydroscatlog.log (193054 bytes) INFO 2025-06-26 19:29:40,011 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2013.079.00/navigation.log (737798 bytes) INFO 2025-06-26 19:29:40,090 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2013.079.00/isuslog.log (15317 bytes) INFO 2025-06-26 19:29:40,095 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2013.079.00/isuslog.log: [2] INFO 2025-06-26 19:29:40,096 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2013.079.00/parosci.log (272870 bytes) INFO 2025-06-26 19:29:40,123 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2013.079.00/tailCone.log (138763 bytes) INFO 2025-06-26 19:29:40,146 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.22 seconds WARNING 2025-06-26 19:29:40,146 process.py download_process():196 [1] No lopc.bin file for 2013.079.00 INFO 2025-06-26 19:29:40,146 process.py calibrate():227 [1] Calibration steps for 2013.079.00 WARNING 2025-06-26 19:29:40,195 calibrate.py _navigation_process():1588 [1] No positive depths found in 2013.079.00/navigation.nc INFO 2025-06-26 19:29:40,199 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 19:29:40,200 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 19:29:45,215 calibrate.py _nudge_pos():1862 [1] 542: - - - 0 0.00 - - INFO 2025-06-26 19:29:45,215 calibrate.py _nudge_pos():1868 [1] Points in final series = 2704 INFO 2025-06-26 19:29:45,259 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 5 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 19:29:45,301 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 35 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 19:29:45,320 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 35 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 19:29:45,321 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2013.079.00/ctd1.nc WARNING 2025-06-26 19:29:45,322 calibrate.py _range_qc_combined_nc():890 [1] More than 500 (2166) ctd1_salinity values found outside of range. This may indicate a problem with the ctd1 data. INFO 2025-06-26 19:29:45,322 calibrate.py _range_qc_combined_nc():898 [1] Setting 2166 ctd1_salinity values to NaN INFO 2025-06-26 19:29:45,322 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 19:29:45,323 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 19:29:45,356 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 35 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 19:29:45,375 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 35 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 19:29:45,376 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2013.079.00/ctd2.nc WARNING 2025-06-26 19:29:45,377 calibrate.py _range_qc_combined_nc():890 [1] More than 500 (2167) ctd2_salinity values found outside of range. This may indicate a problem with the ctd2 data. INFO 2025-06-26 19:29:45,377 calibrate.py _range_qc_combined_nc():898 [1] Setting 2167 ctd2_salinity values to NaN INFO 2025-06-26 19:29:45,378 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 19:29:45,378 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 19:29:45,406 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2013.079.00 ERROR 2025-06-26 19:29:45,406 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2013.079.00 ERROR 2025-06-26 19:29:45,406 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2013.079.00 INFO 2025-06-26 19:29:45,412 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2013.079.00/dorado_2013.079.00_cal.nc INFO 2025-06-26 19:29:45,449 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 19:29:45,453 process.py align():251 [1] Alignment steps for 2013.079.00 INFO 2025-06-26 19:29:45,472 align.py process_cal():139 [1] Processing dorado_2013.079.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2013.079.00 INFO 2025-06-26 19:29:45,477 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 19:29:45,478 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 19:29:45,489 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 19:29:45,490 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 19:29:45,499 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 19:29:45,501 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 19:29:45,506 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 19:29:45,506 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 19:29:45,510 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 19:29:45,511 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 19:29:45,520 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2013.079.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:29:45,522 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:29:45,531 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2013.079.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:29:45,532 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:29:45,541 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2013.079.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:29:45,543 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:29:45,552 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2013.079.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:29:45,554 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:29:45,563 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2013.079.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:29:45,565 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:29:45,574 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2013.079.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:29:45,576 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:29:45,585 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2013.079.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:29:45,587 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:29:45,596 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2013.079.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:29:45,598 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:29:45,607 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2013.079.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:29:45,609 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:29:45,618 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2013.079.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:29:45,620 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:29:45,629 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2013.079.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:29:45,631 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:29:45,640 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2013.079.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:29:45,642 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:29:45,651 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2013.079.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:29:45,654 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:29:45,664 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2013.079.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:29:45,665 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:29:45,675 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2013.079.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:29:45,677 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:29:45,687 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2013.079.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:29:45,689 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:29:45,699 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2013.079.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:29:45,700 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:29:45,710 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2013.079.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:29:45,712 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:29:45,722 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2013.079.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:29:45,724 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:29:45,733 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2013.079.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:29:45,735 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:29:45,745 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2013.079.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:29:45,747 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:29:45,757 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2013.079.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:29:45,758 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:29:45,771 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.91 INFO 2025-06-26 19:29:45,783 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.91 INFO 2025-06-26 19:29:45,795 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.91 INFO 2025-06-26 19:29:45,808 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 19:29:45,818 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2013.079.00/dorado_2013.079.00_align.nc INFO 2025-06-26 19:29:45,854 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 19:29:45,856 process.py resample():273 [1] Resampling steps for 2013.079.00 INFO 2025-06-26 19:29:45,856 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 19:29:45,875 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2013.079.00/dorado_2013.079.00_align.nc mission netCDF file INFO 2025-06-26 19:29:45,879 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2013.079.00/dorado_2013.079.00_align.nc mission netCDF file INFO 2025-06-26 19:29:45,880 resample.py get_mission_start_end():1145 [1] navigation: 2013-03-20T00:11:49.276335616 to 2013-03-20T00:20:49.829305344 (0 days 00:00:00.179987712 before mission_end) INFO 2025-06-26 19:29:45,881 resample.py get_mission_start_end():1145 [1] hs2 : 2013-03-20T00:11:18.558439936 to 2013-03-20T00:20:49.809306624 (0 days 00:00:00.199986432 before mission_end) INFO 2025-06-26 19:29:45,883 resample.py get_mission_start_end():1145 [1] ctd1 : 2013-03-20T00:11:48.686376192 to 2013-03-20T00:20:49.899300608 (0 days 00:00:00.109992448 before mission_end) INFO 2025-06-26 19:29:45,884 resample.py get_mission_start_end():1145 [1] ctd2 : 2013-03-20T00:11:48.546385664 to 2013-03-20T00:20:50.009293056 (0 days 00:00:00 before mission_end) INFO 2025-06-26 19:29:45,885 resample.py get_mission_start_end():1145 [1] isus : 2013-03-20T00:12:12.494745344 to 2013-03-20T00:20:49.739311360 (0 days 00:00:00.269981696 before mission_end) INFO 2025-06-26 19:29:45,886 resample.py get_mission_start_end():1145 [1] tailcone : 2013-03-20T00:11:14.048749056 to 2013-03-20T00:20:49.819305984 (0 days 00:00:00.189987072 before mission_end) INFO 2025-06-26 19:29:45,887 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2013.079.00/dorado_2013.079.00_align.nc mission netCDF file INFO 2025-06-26 19:29:45,887 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 19:29:45,919 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 19:29:45,927 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 19:29:45,935 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 19:29:45,943 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 19:29:45,951 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 19:29:45,959 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 19:29:45,967 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 19:29:45,975 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 19:29:45,982 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 19:29:45,994 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 19:29:46,001 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 19:29:46,008 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 19:29:46,015 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 19:29:46,022 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 19:29:46,029 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 19:29:46,036 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 19:29:46,043 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 19:29:46,051 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 19:29:46,059 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 19:29:46,071 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 19:29:46,079 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 19:29:46,086 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 19:29:46,094 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 19:29:46,102 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 19:29:46,110 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 19:29:46,118 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 19:29:46,126 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 19:29:46,135 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 19:29:46,228 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2013.079.00/dorado_2013.079.00_1S.nc INFO 2025-06-26 19:29:47,985 create_products.py gulper_odv():401 [1] No gulper times found for 2013.079.00 INFO 2025-06-26 19:29:47,985 process.py archive():337 [1] Archiving steps for 2013.079.00 INFO 2025-06-26 19:29:47,986 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2013.079.00/dorado_2013.079.00, BASE_PATH = /data/auv_data INFO 2025-06-26 19:29:47,986 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2013.079.00/dorado_2013.079.00 files to /Volumes/AUVCTD/surveys/2013/netcdf INFO 2025-06-26 19:29:47,987 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2013/netcdf/dorado_2013.079.00_1S.nc INFO 2025-06-26 19:29:47,994 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.079.00/dorado_2013.079.00_1S.nc /Volumes/AUVCTD/surveys/2013/netcdf done. INFO 2025-06-26 19:29:47,995 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2013/netcdf/dorado_2013.079.00_cal.nc INFO 2025-06-26 19:29:48,003 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.079.00/dorado_2013.079.00_cal.nc /Volumes/AUVCTD/surveys/2013/netcdf done. INFO 2025-06-26 19:29:48,004 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2013/netcdf/dorado_2013.079.00_align.nc INFO 2025-06-26 19:29:48,013 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.079.00/dorado_2013.079.00_align.nc /Volumes/AUVCTD/surveys/2013/netcdf done. INFO 2025-06-26 19:29:48,020 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.079.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2013/2013079/2013.079.00 done. INFO 2025-06-26 19:29:48,026 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.079.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2013/2013079/2013.079.00 done. INFO 2025-06-26 19:29:48,030 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.079.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2013/2013079/2013.079.00 done. INFO 2025-06-26 19:29:48,035 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.079.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2013/2013079/2013.079.00 done. INFO 2025-06-26 19:29:48,042 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.079.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2013/2013079/2013.079.00 done. INFO 2025-06-26 19:29:48,046 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.079.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2013/2013079/2013.079.00 done. INFO 2025-06-26 19:29:48,051 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.079.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2013/2013079/2013.079.00 done. INFO 2025-06-26 19:29:48,055 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.079.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2013/2013079/2013.079.00 done. INFO 2025-06-26 19:29:48,055 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 19:29:48,056 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2013.079.00/dorado_2013.079.00_processing.log /Volumes/AUVCTD/surveys/2013/netcdf