INFO 2025-06-26 19:21:58,150 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 19:21:58,150 process.py process_mission():434 [1] dorado_info[mission]["comment"] = CANON September 2012 - laps around ESP drifter - last one for this campaign - ctdToUse = ctd1 INFO 2025-06-26 19:21:58,150 process.py process_mission():449 [1] Processing CANON September 2012 mission 2012.268.07 by user docker_user on host eae60d30a712 INFO 2025-06-26 19:21:58,150 process.py download_process():165 [1] Download and processing steps for 2012.268.07 INFO 2025-06-26 19:21:58,150 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2012/2012268/2012.268.07 INFO 2025-06-26 19:21:58,150 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2012/2012268/2012.268.07 to /data/auv_data/dorado/missionlogs/2012.268.07 INFO 2025-06-26 19:22:00,190 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2012.268.07 INFO 2025-06-26 19:22:00,190 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2012.268.07/ctdDriver.log (2540838 bytes) INFO 2025-06-26 19:22:00,369 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2012.268.07/ctdDriver2.log (2553119 bytes) INFO 2025-06-26 19:22:00,559 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2012.268.07/gps.log (388220 bytes) INFO 2025-06-26 19:22:00,608 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2012.268.07/hydroscatlog.log (2240806 bytes) INFO 2025-06-26 19:22:00,840 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2012.268.07/navigation.log (9031078 bytes) INFO 2025-06-26 19:22:01,464 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2012.268.07/isuslog.log (196629 bytes) INFO 2025-06-26 19:22:01,487 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2012.268.07/parosci.log (2705846 bytes) INFO 2025-06-26 19:22:01,713 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2012.268.07/tailCone.log (1602235 bytes) INFO 2025-06-26 19:22:01,911 logs2netcdfs.py download_process_logs():807 [1] Time to process: 1.72 seconds INFO 2025-06-26 19:22:01,911 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2012.268.07/lopc.bin (16904418 bytes) INFO 2025-06-26 19:22:01,911 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 19:22:01 2025 INFO 2025-06-26 19:22:01,912 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2012.268.07/parosci.nc INFO 2025-06-26 19:22:01,912 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 19:22:01,912 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2012.268.07/parosci.nc INFO 2025-06-26 19:22:01,914 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1348506080.5, sensor_off_time = 1348512755.5 INFO 2025-06-26 19:22:01,914 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 6674 seconds. Expecting to read 13348 L frames from the lopc.bin file. INFO 2025-06-26 19:22:01,914 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 13348 records from the lopc.bin file. INFO 2025-06-26 19:22:01,994 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2012-09-24 17:01:20 Z and endTime = 2012-09-24 18:52:35 Z with 13348 records expected to be read from lopc.bin INFO 2025-06-26 19:22:01,994 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2012.268.07/lopc.bin INFO 2025-06-26 19:22:01,994 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2012.268.07/lopc.nc INFO 2025-06-26 19:22:01,994 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2012.268.07/lopc.nc INFO 2025-06-26 19:22:01,995 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2012.268.07 INFO 2025-06-26 19:22:01,995 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 WARNING 2025-06-26 19:22:01,997 lopcToNetCDF.py readCframeData():665 [1] Unable to parse a float from the string cstr[:70] = A0215807 WARNING 2025-06-26 19:22:01,998 lopcToNetCDF.py readCframeData():665 [1] Unable to parse a float from the string cstr[:70] = INFO 2025-06-26 19:22:02,101 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 19:22:02,101 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 19:22:02,101 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ ERROR 2025-06-26 19:22:03,741 process.py download_process():223 [1] UnexpectedAreaOfCode: Encountered unexpected area of code - lopc.nc file is probably corrupt INFO 2025-06-26 19:22:03,741 process.py calibrate():227 [1] Calibration steps for 2012.268.07 INFO 2025-06-26 19:22:03,837 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 19:22:03,838 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 19:22:09,349 calibrate.py _nudge_pos():1806 [1] 632: 0.050 -0.0005730 -0.0032905 6430 21.43 -3.964 -28.452 2012-09-24T17:33:16.155312384 INFO 2025-06-26 19:22:44,400 calibrate.py _nudge_pos():1806 [1] 4430: 0.060 0.0000066 -0.0000123 65 0.21 4.615 -10.645 2012-09-24T18:36:46.154309632 INFO 2025-06-26 19:22:53,220 calibrate.py _nudge_pos():1862 [1] 5343: - - - 1 0.00 - - INFO 2025-06-26 19:22:53,220 calibrate.py _nudge_pos():1868 [1] Points in final series = 33194 WARNING 2025-06-26 19:22:53,339 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-06-26 19:22:53,592 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 6 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 19:22:53,854 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 60 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 19:22:54,052 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 60 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 19:22:54,053 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2012.268.07/ctd1.nc INFO 2025-06-26 19:22:54,054 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 19:22:54,055 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 19:22:54,055 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 19:22:54,300 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 28 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 19:22:54,500 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 28 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 19:22:54,502 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2012.268.07/ctd2.nc INFO 2025-06-26 19:22:54,503 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 19:22:54,503 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 19:22:54,503 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 19:22:54,514 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2012.268.07 ERROR 2025-06-26 19:22:54,514 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no time coordinate - likely an incomplete lopc.nc file in missionlogs/2012.268.07 ERROR 2025-06-26 19:22:54,514 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2012.268.07 INFO 2025-06-26 19:22:54,542 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2012.268.07/dorado_2012.268.07_cal.nc INFO 2025-06-26 19:22:54,598 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 19:22:54,603 process.py align():251 [1] Alignment steps for 2012.268.07 INFO 2025-06-26 19:22:54,626 align.py process_cal():139 [1] Processing dorado_2012.268.07_cal.nc from /data/auv_data/dorado/missionnetcdfs/2012.268.07 INFO 2025-06-26 19:22:54,639 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 19:22:54,642 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 19:22:54,671 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 19:22:54,674 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 19:22:54,702 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 19:22:54,705 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 19:22:54,721 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 19:22:54,721 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 19:22:54,732 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 19:22:54,735 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 19:22:54,762 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2012.268.07_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:22:54,765 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:22:54,791 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2012.268.07_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:22:54,793 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:22:54,818 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2012.268.07_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:22:54,820 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:22:54,845 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2012.268.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:22:54,848 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:22:54,873 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2012.268.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:22:54,875 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:22:54,900 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2012.268.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:22:54,903 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:22:54,927 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2012.268.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:22:54,930 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:22:54,955 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2012.268.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:22:54,957 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:22:54,983 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2012.268.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:22:54,985 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:22:55,011 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2012.268.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:22:55,014 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:22:55,039 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2012.268.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:22:55,042 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:22:55,068 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2012.268.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:22:55,070 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:22:55,096 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2012.268.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:22:55,098 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:22:55,123 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2012.268.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:22:55,126 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:22:55,151 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2012.268.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:22:55,154 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:22:55,179 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2012.268.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:22:55,182 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:22:55,208 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2012.268.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:22:55,210 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:22:55,236 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2012.268.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:22:55,238 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:22:55,265 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2012.268.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:22:55,268 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:22:55,294 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2012.268.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:22:55,296 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:22:55,322 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2012.268.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:22:55,325 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:22:55,351 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2012.268.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 19:22:55,353 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 19:22:55,384 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.93 INFO 2025-06-26 19:22:55,409 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.93 INFO 2025-06-26 19:22:55,434 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.93 INFO 2025-06-26 19:22:55,460 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 19:22:55,482 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2012.268.07/dorado_2012.268.07_align.nc INFO 2025-06-26 19:22:55,533 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 19:22:55,535 process.py resample():273 [1] Resampling steps for 2012.268.07 INFO 2025-06-26 19:22:55,535 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 19:22:55,557 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2012.268.07/dorado_2012.268.07_align.nc mission netCDF file INFO 2025-06-26 19:22:55,561 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2012.268.07/dorado_2012.268.07_align.nc mission netCDF file INFO 2025-06-26 19:22:55,562 resample.py get_mission_start_end():1145 [1] navigation: 2012-09-24T17:01:56.784058112 to 2012-09-24T18:52:35.359284480 (0 days 00:00:00.099993088 before mission_end) INFO 2025-06-26 19:22:55,563 resample.py get_mission_start_end():1145 [1] hs2 : 2012-09-24T17:01:26.846108928 to 2012-09-24T18:52:35.459277568 (0 days 00:00:00 before mission_end) INFO 2025-06-26 19:22:55,565 resample.py get_mission_start_end():1145 [1] ctd1 : 2012-09-24T17:02:20.812411904 to 2012-09-24T18:52:35.409281024 (0 days 00:00:00.049996544 before mission_end) INFO 2025-06-26 19:22:55,566 resample.py get_mission_start_end():1145 [1] ctd2 : 2012-09-24T17:01:48.884599296 to 2012-09-24T18:52:35.439278848 (0 days 00:00:00.019998720 before mission_end) INFO 2025-06-26 19:22:55,567 resample.py get_mission_start_end():1145 [1] isus : 2012-09-24T17:02:35.691392768 to 2012-09-24T18:52:34.929313792 (0 days 00:00:00.529963776 before mission_end) INFO 2025-06-26 19:22:55,569 resample.py get_mission_start_end():1145 [1] tailcone : 2012-09-24T17:01:21.496475392 to 2012-09-24T18:52:35.389282560 (0 days 00:00:00.069995008 before mission_end) INFO 2025-06-26 19:22:55,569 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2012.268.07/dorado_2012.268.07_align.nc mission netCDF file INFO 2025-06-26 19:22:55,570 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 19:22:55,659 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 19:22:55,677 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 19:22:55,694 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 19:22:55,711 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 19:22:55,727 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 19:22:55,742 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 19:22:55,758 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 19:22:55,772 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 19:22:55,787 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 19:22:55,801 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 19:22:55,815 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 19:22:55,829 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 19:22:55,843 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 19:22:55,857 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 19:22:55,871 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 19:22:55,884 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 19:22:55,898 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 19:22:55,914 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 19:22:55,930 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 19:22:55,945 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 19:22:55,960 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 19:22:55,975 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 19:22:55,990 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 19:22:56,005 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 19:22:56,017 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 19:22:56,027 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 19:22:56,036 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 19:22:56,054 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 19:22:56,184 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2012.268.07/dorado_2012.268.07_1S.nc INFO 2025-06-26 19:22:58,060 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-26 19:23:01,318 create_products.py gulper_odv():522 [1] Wrote 3 Gulper data lines to /data/auv_data/dorado/missionodvs/2012.268.07/dorado_2012.268.07_1S_Gulper.txt INFO 2025-06-26 19:23:01,318 process.py archive():337 [1] Archiving steps for 2012.268.07 INFO 2025-06-26 19:23:01,318 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2012.268.07/dorado_2012.268.07, BASE_PATH = /data/auv_data INFO 2025-06-26 19:23:01,320 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2012.268.07/dorado_2012.268.07 files to /Volumes/AUVCTD/surveys/2012/netcdf INFO 2025-06-26 19:23:01,320 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2012/netcdf/dorado_2012.268.07_1S.nc INFO 2025-06-26 19:23:01,331 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2012.268.07/dorado_2012.268.07_1S.nc /Volumes/AUVCTD/surveys/2012/netcdf done. INFO 2025-06-26 19:23:01,332 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2012/netcdf/dorado_2012.268.07_cal.nc INFO 2025-06-26 19:23:01,365 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2012.268.07/dorado_2012.268.07_cal.nc /Volumes/AUVCTD/surveys/2012/netcdf done. INFO 2025-06-26 19:23:01,366 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2012/netcdf/dorado_2012.268.07_align.nc INFO 2025-06-26 19:23:01,397 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2012.268.07/dorado_2012.268.07_align.nc /Volumes/AUVCTD/surveys/2012/netcdf done. INFO 2025-06-26 19:23:01,410 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2012.268.07/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2012/2012268/2012.268.07 done. INFO 2025-06-26 19:23:01,423 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2012.268.07/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2012/2012268/2012.268.07 done. INFO 2025-06-26 19:23:01,429 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2012.268.07/gps.nc /Volumes/AUVCTD/missionnetcdfs/2012/2012268/2012.268.07 done. INFO 2025-06-26 19:23:01,441 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2012.268.07/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2012/2012268/2012.268.07 done. INFO 2025-06-26 19:23:01,467 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2012.268.07/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2012/2012268/2012.268.07 done. INFO 2025-06-26 19:23:01,472 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2012.268.07/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2012/2012268/2012.268.07 done. INFO 2025-06-26 19:23:01,484 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2012.268.07/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2012/2012268/2012.268.07 done. INFO 2025-06-26 19:23:01,494 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2012.268.07/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2012/2012268/2012.268.07 done. INFO 2025-06-26 19:23:01,502 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2012.268.07/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2012/2012268/2012.268.07 done. INFO 2025-06-26 19:23:01,502 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 19:23:01,503 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2012/odv/dorado_2012.268.07_1S_Gulper.txt INFO 2025-06-26 19:23:01,507 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2012.268.07/dorado_2012.268.07_1S_Gulper.txt /Volumes/AUVCTD/surveys/2012/odv done. INFO 2025-06-26 19:23:01,507 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2012.268.07/dorado_2012.268.07_processing.log /Volumes/AUVCTD/surveys/2012/netcdf