INFO 2025-06-26 17:51:22,388 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 17:51:22,388 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Brewer mission - Mapping vehicle tail plus Dorado nosecone - In Santa Monica Basin UTM Zone 11S - Incomplete depth data for CTD, unable to create section plots - ctdToUse = ctd1 INFO 2025-06-26 17:51:22,388 process.py process_mission():449 [1] Processing AUVCTD mission 2011.158.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 17:51:22,388 process.py download_process():165 [1] Download and processing steps for 2011.158.00 INFO 2025-06-26 17:51:22,388 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2011/2011158/2011.158.00 INFO 2025-06-26 17:51:22,388 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2011/2011158/2011.158.00 to /data/auv_data/dorado/missionlogs/2011.158.00 INFO 2025-06-26 17:51:28,631 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2011.158.00 INFO 2025-06-26 17:51:28,632 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.158.00/ctdDriver.log (18744022 bytes) INFO 2025-06-26 17:51:30,071 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.158.00/ctdDriver2.log (18750431 bytes) INFO 2025-06-26 17:51:31,444 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.158.00/gps.log (6116 bytes) INFO 2025-06-26 17:51:31,454 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.158.00/hydroscatlog.log (16406902 bytes) INFO 2025-06-26 17:51:33,150 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2011.158.00/hydroscatlog.log: [24047] INFO 2025-06-26 17:51:33,213 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.158.00/navigation.log (66421446 bytes) INFO 2025-06-26 17:51:38,219 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.158.00/isuslog.log (1547925 bytes) INFO 2025-06-26 17:51:38,372 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.158.00/parosci.log (21388022 bytes) INFO 2025-06-26 17:51:40,259 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.158.00/tailCone.log (11724619 bytes) INFO 2025-06-26 17:51:41,716 logs2netcdfs.py download_process_logs():807 [1] Time to process: 13.08 seconds WARNING 2025-06-26 17:51:41,716 process.py download_process():196 [1] No lopc.bin file for 2011.158.00 INFO 2025-06-26 17:51:41,716 process.py calibrate():227 [1] Calibration steps for 2011.158.00 INFO 2025-06-26 17:51:42,027 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 17:51:42,029 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 17:51:42,612 calibrate.py _nudge_pos():1862 [1] 54: - - - 243922 813.07 - - INFO 2025-06-26 17:51:42,612 calibrate.py _nudge_pos():1868 [1] Points in final series = 244187 WARNING 2025-06-26 17:51:42,952 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 9.09 Hz INFO 2025-06-26 17:52:08,938 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 17:52:10,746 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 44 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 17:52:12,196 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 44 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 17:52:12,200 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2011.158.00/ctd1.nc INFO 2025-06-26 17:52:12,201 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 17:52:12,201 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 17:52:12,201 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 17:52:13,915 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 17:52:15,364 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 17:52:15,368 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2011.158.00/ctd2.nc INFO 2025-06-26 17:52:15,369 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 17:52:15,370 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 17:52:15,370 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 17:52:15,413 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2011.158.00 ERROR 2025-06-26 17:52:15,414 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2011.158.00 ERROR 2025-06-26 17:52:15,414 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2011.158.00 INFO 2025-06-26 17:52:15,602 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2011.158.00/dorado_2011.158.00_cal.nc INFO 2025-06-26 17:52:15,773 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 17:52:15,777 process.py align():251 [1] Alignment steps for 2011.158.00 INFO 2025-06-26 17:52:15,814 align.py process_cal():139 [1] Processing dorado_2011.158.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2011.158.00 INFO 2025-06-26 17:52:15,883 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:52:15,890 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 17:52:16,046 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:52:16,057 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 17:52:16,212 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:52:16,221 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 17:52:16,316 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 17:52:16,317 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 17:52:16,376 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:52:16,385 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 17:52:16,536 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2011.158.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:52:16,545 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:52:16,678 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2011.158.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:52:16,686 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:52:16,818 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2011.158.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:52:16,826 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:52:16,959 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.158.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:52:16,967 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:52:17,103 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.158.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:52:17,111 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:52:17,243 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.158.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:52:17,251 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:52:17,388 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.158.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:52:17,396 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:52:17,529 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.158.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:52:17,538 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:52:17,673 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.158.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:52:17,681 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:52:17,815 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.158.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:52:17,825 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:52:17,961 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.158.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:52:17,969 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:52:18,104 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.158.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:52:18,112 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:52:18,246 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.158.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:52:18,254 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:52:18,390 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.158.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:52:18,397 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:52:18,534 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.158.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:52:18,542 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:52:18,678 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.158.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:52:18,686 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:52:18,822 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.158.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:52:18,830 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:52:18,962 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.158.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:52:18,970 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:52:19,105 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.158.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:52:19,113 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:52:19,247 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.158.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:52:19,257 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:52:19,399 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.158.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:52:19,408 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:52:19,542 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.158.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:52:19,550 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:52:19,710 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.99 INFO 2025-06-26 17:52:19,817 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.99 INFO 2025-06-26 17:52:19,931 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.99 INFO 2025-06-26 17:52:20,047 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 17:52:20,148 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2011.158.00/dorado_2011.158.00_align.nc INFO 2025-06-26 17:52:20,272 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 17:52:20,275 process.py resample():273 [1] Resampling steps for 2011.158.00 INFO 2025-06-26 17:52:20,275 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 17:52:20,303 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2011.158.00/dorado_2011.158.00_align.nc mission netCDF file INFO 2025-06-26 17:52:20,310 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2011.158.00/dorado_2011.158.00_align.nc mission netCDF file INFO 2025-06-26 17:52:20,312 resample.py get_mission_start_end():1145 [1] navigation: 2011-06-07T03:11:49.718506496 to 2011-06-07T16:45:47.192910336 (0 days 00:00:00.159988992 before mission_end) INFO 2025-06-26 17:52:20,314 resample.py get_mission_start_end():1145 [1] hs2 : 2011-06-07T03:11:37.969311488 to 2011-06-07T16:45:47.352899328 (0 days 00:00:00 before mission_end) INFO 2025-06-26 17:52:20,317 resample.py get_mission_start_end():1145 [1] ctd1 : 2011-06-07T03:12:18.096562432 to 2011-06-07T16:45:47.322901504 (0 days 00:00:00.029997824 before mission_end) INFO 2025-06-26 17:52:20,319 resample.py get_mission_start_end():1145 [1] ctd2 : 2011-06-07T03:12:01.297713152 to 2011-06-07T16:45:47.182910976 (0 days 00:00:00.169988352 before mission_end) INFO 2025-06-26 17:52:20,320 resample.py get_mission_start_end():1145 [1] isus : 2011-06-07T03:12:50.064372480 to 2011-06-07T16:45:46.892931072 (0 days 00:00:00.459968256 before mission_end) INFO 2025-06-26 17:52:20,323 resample.py get_mission_start_end():1145 [1] tailcone : 2011-06-07T03:11:31.259771136 to 2011-06-07T16:45:47.242906880 (0 days 00:00:00.109992448 before mission_end) INFO 2025-06-26 17:52:20,323 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2011.158.00/dorado_2011.158.00_align.nc mission netCDF file INFO 2025-06-26 17:52:20,324 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 17:52:20,850 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 17:52:20,934 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 17:52:21,014 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 17:52:21,093 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 17:52:21,160 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 17:52:21,227 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 17:52:21,293 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 17:52:21,358 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 17:52:21,421 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 17:52:21,483 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 17:52:21,545 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:52:21,609 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:52:21,671 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:52:21,733 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 17:52:21,795 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 17:52:21,857 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 17:52:21,920 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 17:52:21,986 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 17:52:22,053 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 17:52:22,118 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 17:52:22,183 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:52:22,249 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:52:22,314 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:52:22,379 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 17:52:22,409 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 17:52:22,434 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 17:52:22,460 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 17:52:22,534 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 17:52:22,907 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2011.158.00/dorado_2011.158.00_1S.nc INFO 2025-06-26 17:52:25,554 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-26 17:52:29,091 create_products.py gulper_odv():522 [1] Wrote 3 Gulper data lines to /data/auv_data/dorado/missionodvs/2011.158.00/dorado_2011.158.00_1S_Gulper.txt INFO 2025-06-26 17:52:29,091 process.py archive():337 [1] Archiving steps for 2011.158.00 INFO 2025-06-26 17:52:29,091 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2011.158.00/dorado_2011.158.00, BASE_PATH = /data/auv_data INFO 2025-06-26 17:52:29,092 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2011.158.00/dorado_2011.158.00 files to /Volumes/AUVCTD/surveys/2011/netcdf INFO 2025-06-26 17:52:29,093 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2011/netcdf/dorado_2011.158.00_1S.nc INFO 2025-06-26 17:52:29,128 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.158.00/dorado_2011.158.00_1S.nc /Volumes/AUVCTD/surveys/2011/netcdf done. INFO 2025-06-26 17:52:29,129 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2011/netcdf/dorado_2011.158.00_cal.nc INFO 2025-06-26 17:52:29,322 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.158.00/dorado_2011.158.00_cal.nc /Volumes/AUVCTD/surveys/2011/netcdf done. INFO 2025-06-26 17:52:29,323 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2011/netcdf/dorado_2011.158.00_align.nc INFO 2025-06-26 17:52:29,507 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.158.00/dorado_2011.158.00_align.nc /Volumes/AUVCTD/surveys/2011/netcdf done. INFO 2025-06-26 17:52:29,560 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.158.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011158/2011.158.00 done. INFO 2025-06-26 17:52:29,611 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.158.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011158/2011.158.00 done. INFO 2025-06-26 17:52:29,616 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.158.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011158/2011.158.00 done. INFO 2025-06-26 17:52:29,661 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.158.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011158/2011.158.00 done. INFO 2025-06-26 17:52:29,834 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.158.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011158/2011.158.00 done. INFO 2025-06-26 17:52:29,844 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.158.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011158/2011.158.00 done. INFO 2025-06-26 17:52:29,900 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.158.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011158/2011.158.00 done. INFO 2025-06-26 17:52:29,941 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.158.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011158/2011.158.00 done. INFO 2025-06-26 17:52:29,942 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 17:52:29,943 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2011/odv/dorado_2011.158.00_1S_Gulper.txt INFO 2025-06-26 17:52:29,948 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2011.158.00/dorado_2011.158.00_1S_Gulper.txt /Volumes/AUVCTD/surveys/2011/odv done. INFO 2025-06-26 17:52:29,948 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.158.00/dorado_2011.158.00_processing.log /Volumes/AUVCTD/surveys/2011/netcdf