INFO 2025-06-26 17:46:08,057 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 17:46:08,057 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Autonomy mission - follow tethysCtr (generated by tethys front detection code) with Tom O'Reilly's Drifter Tracking App - a windy day on deployment - ctdToUse = ctd1 INFO 2025-06-26 17:46:08,057 process.py process_mission():449 [1] Processing AUVCTD mission 2011.118.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 17:46:08,057 process.py download_process():165 [1] Download and processing steps for 2011.118.00 INFO 2025-06-26 17:46:08,057 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2011/2011118/2011.118.00 INFO 2025-06-26 17:46:08,057 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2011/2011118/2011.118.00 to /data/auv_data/dorado/missionlogs/2011.118.00 INFO 2025-06-26 17:46:14,893 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2011.118.00 INFO 2025-06-26 17:46:14,894 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.118.00/ctdDriver.log (21720011 bytes) INFO 2025-06-26 17:46:16,490 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.118.00/ctdDriver2.log (21720095 bytes) INFO 2025-06-26 17:46:18,107 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.118.00/gps.log (944564 bytes) INFO 2025-06-26 17:46:18,213 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.118.00/hydroscatlog.log (19001326 bytes) INFO 2025-06-26 17:46:20,190 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.118.00/navigation.log (76910582 bytes) INFO 2025-06-26 17:46:25,701 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.118.00/isuslog.log (1406421 bytes) INFO 2025-06-26 17:46:25,838 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.118.00/parosci.log (23017334 bytes) INFO 2025-06-26 17:46:27,792 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.118.00/tailCone.log (13581115 bytes) INFO 2025-06-26 17:46:29,480 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.118.00/biolume.log (15803886 bytes) INFO 2025-06-26 17:46:31,050 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 17:46:31,821 logs2netcdfs.py download_process_logs():807 [1] Time to process: 16.93 seconds INFO 2025-06-26 17:46:31,821 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2011.118.00/lopc.bin (183133000 bytes) INFO 2025-06-26 17:46:31,822 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 17:46:31 2025 INFO 2025-06-26 17:46:31,822 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2011.118.00/parosci.nc INFO 2025-06-26 17:46:31,822 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 17:46:31,822 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2011.118.00/parosci.nc INFO 2025-06-26 17:46:31,825 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1304023127.9, sensor_off_time = 1304079714.5 INFO 2025-06-26 17:46:31,826 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 56586 seconds. Expecting to read 113172 L frames from the lopc.bin file. INFO 2025-06-26 17:46:31,826 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 113172 records from the lopc.bin file. INFO 2025-06-26 17:46:32,499 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2011-04-28 20:38:47 Z and endTime = 2011-04-29 12:21:54 Z with 113172 records expected to be read from lopc.bin INFO 2025-06-26 17:46:32,499 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2011.118.00/lopc.bin INFO 2025-06-26 17:46:32,499 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2011.118.00/lopc.nc INFO 2025-06-26 17:46:32,500 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2011.118.00/lopc.nc INFO 2025-06-26 17:46:32,500 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2011.118.00 INFO 2025-06-26 17:46:32,500 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 WARNING 2025-06-26 17:46:32,505 lopcToNetCDF.py readCframeData():665 [1] Unable to parse a float from the string cstr[:70] = A01822937 WARNING 2025-06-26 17:46:32,506 lopcToNetCDF.py readCframeData():665 [1] Unable to parse a float from the string cstr[:70] = ERROR 2025-06-26 17:46:32,513 process.py download_process():223 [1] UnexpectedAreaOfCode: Encountered unexpected area of code - lopc.nc file is probably corrupt INFO 2025-06-26 17:46:32,515 process.py calibrate():227 [1] Calibration steps for 2011.118.00 INFO 2025-06-26 17:46:32,909 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 17:46:32,912 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 17:46:38,034 calibrate.py _nudge_pos():1806 [1] 527: 0.060 -0.0007353 -0.0035007 9670 32.23 -3.384 -20.127 2011-04-28T21:19:47.313213184 INFO 2025-06-26 17:46:39,037 calibrate.py _nudge_pos():1806 [1] 627: 0.050 0.0000039 -0.0000046 20 0.06 9.201 -13.581 2011-04-28T21:21:30.316156928 INFO 2025-06-26 17:46:39,107 calibrate.py _nudge_pos():1806 [1] 634: 0.060 -0.0007258 -0.0031954 9475 31.58 -3.409 -18.749 2011-04-28T21:53:11.315929600 INFO 2025-06-26 17:46:40,152 calibrate.py _nudge_pos():1806 [1] 737: 0.060 -0.0008744 -0.0031783 9510 31.70 -4.092 -18.580 2011-04-28T22:26:35.318646016 INFO 2025-06-26 17:46:41,062 calibrate.py _nudge_pos():1806 [1] 827: 0.070 -0.0009293 -0.0031042 9665 32.21 -4.279 -17.856 2011-04-28T23:00:17.310130176 INFO 2025-06-26 17:46:41,854 calibrate.py _nudge_pos():1806 [1] 905: 0.070 -0.0009926 -0.0030072 9780 32.60 -4.517 -17.095 2011-04-28T23:34:11.310791424 INFO 2025-06-26 17:46:42,442 calibrate.py _nudge_pos():1806 [1] 963: 0.060 -0.0000092 0.0000331 15 0.05 -29.185 131.545 2011-04-28T23:35:13.316543744 INFO 2025-06-26 17:46:42,603 calibrate.py _nudge_pos():1806 [1] 979: 0.070 -0.0000276 0.0000128 15 0.05 -87.799 50.948 2011-04-28T23:35:32.315242240 INFO 2025-06-26 17:46:42,685 calibrate.py _nudge_pos():1806 [1] 987: 0.070 -0.0006080 -0.0033210 9695 32.31 -2.791 -19.044 2011-04-29T00:07:59.311863808 INFO 2025-06-26 17:46:43,374 calibrate.py _nudge_pos():1806 [1] 1054: 0.070 0.0000219 -0.0000250 40 0.13 24.943 -35.696 2011-04-29T00:09:13.316794112 INFO 2025-06-26 17:46:44,277 calibrate.py _nudge_pos():1806 [1] 1141: 0.070 -0.0010457 -0.0026836 8755 29.18 -5.314 -17.041 2011-04-29T00:39:53.310745856 INFO 2025-06-26 17:46:45,401 calibrate.py _nudge_pos():1806 [1] 1249: 0.070 -0.0000551 -0.0000438 15 0.05 -175.193 -173.994 2011-04-29T00:41:44.313141760 INFO 2025-06-26 17:46:45,660 calibrate.py _nudge_pos():1806 [1] 1274: 0.070 -0.0000161 0.0000076 15 0.05 -51.207 30.328 2011-04-29T00:42:13.311155200 INFO 2025-06-26 17:46:45,693 calibrate.py _nudge_pos():1806 [1] 1277: 0.070 -0.0000531 -0.0000314 15 0.05 -168.801 -124.871 2011-04-29T00:42:18.310812672 INFO 2025-06-26 17:46:45,767 calibrate.py _nudge_pos():1806 [1] 1284: 0.070 -0.0018468 -0.0023456 9295 30.98 -8.840 -14.029 2011-04-29T01:13:23.313051392 INFO 2025-06-26 17:46:46,622 calibrate.py _nudge_pos():1806 [1] 1365: 0.070 -0.0000004 -0.0000020 25 0.08 -0.700 -4.744 2011-04-29T01:14:48.317228288 INFO 2025-06-26 17:46:46,921 calibrate.py _nudge_pos():1806 [1] 1393: 0.070 0.0000275 0.0000092 15 0.05 87.546 36.495 2011-04-29T01:15:19.315104768 INFO 2025-06-26 17:46:46,965 calibrate.py _nudge_pos():1806 [1] 1397: 0.080 -0.0002326 -0.0025772 9515 31.71 -1.088 -15.058 2011-04-29T01:47:05.314534912 INFO 2025-06-26 17:46:47,299 calibrate.py _nudge_pos():1806 [1] 1428: 0.080 0.0000898 0.0001385 15 0.05 285.445 550.096 2011-04-29T01:47:38.312274176 INFO 2025-06-26 17:46:47,608 calibrate.py _nudge_pos():1806 [1] 1457: 0.080 0.0019896 -0.0013530 9380 31.26 9.438 -8.019 2011-04-29T02:19:22.311841536 INFO 2025-06-26 17:46:48,427 calibrate.py _nudge_pos():1806 [1] 1536: 0.080 0.0009427 -0.0033889 9725 32.41 4.314 -19.374 2011-04-29T02:53:05.313256192 INFO 2025-06-26 17:46:49,250 calibrate.py _nudge_pos():1806 [1] 1615: 0.080 -0.0005747 -0.0002534 8940 29.80 -2.860 -1.576 2011-04-29T03:24:11.315426304 INFO 2025-06-26 17:46:50,447 calibrate.py _nudge_pos():1806 [1] 1728: 0.080 -0.0001163 -0.0000317 2950 9.83 -1.754 -0.598 2011-04-29T03:35:53.317336064 INFO 2025-06-26 17:46:50,619 calibrate.py _nudge_pos():1806 [1] 1744: 0.080 -0.0000094 -0.0000214 15 0.05 -29.738 -85.022 2011-04-29T03:36:11.316102912 INFO 2025-06-26 17:46:55,270 calibrate.py _nudge_pos():1806 [1] 2182: 0.080 -0.0000099 -0.0000439 30 0.10 -15.167 -84.140 2011-04-29T03:43:34.315755264 INFO 2025-06-26 17:46:55,419 calibrate.py _nudge_pos():1806 [1] 2196: 0.080 0.0000405 -0.0000243 15 0.05 128.832 -96.630 2011-04-29T03:43:50.314659328 INFO 2025-06-26 17:46:55,894 calibrate.py _nudge_pos():1806 [1] 2238: 0.090 -0.0000058 0.0000081 15 0.05 -18.504 32.054 2011-04-29T03:44:34.311645440 INFO 2025-06-26 17:47:01,240 calibrate.py _nudge_pos():1806 [1] 2744: 0.080 0.0000381 0.0000072 20 0.06 89.168 20.928 2011-04-29T03:53:03.316776192 INFO 2025-06-26 17:47:01,515 calibrate.py _nudge_pos():1806 [1] 2770: 0.080 -0.0000116 -0.0000245 65 0.21 -8.093 -21.291 2011-04-29T03:53:41.314173184 INFO 2025-06-26 17:47:02,075 calibrate.py _nudge_pos():1806 [1] 2823: 0.090 0.0000145 -0.0000086 20 0.06 34.049 -25.029 2011-04-29T03:54:37.310337024 INFO 2025-06-26 17:47:04,029 calibrate.py _nudge_pos():1806 [1] 3008: 0.080 -0.0000117 -0.0000442 45 0.15 -11.829 -55.846 2011-04-29T03:57:50.317115392 INFO 2025-06-26 17:47:16,239 calibrate.py _nudge_pos():1806 [1] 4159: 0.080 0.0000105 0.0000059 15 0.05 33.209 23.427 2011-04-29T04:17:04.318060800 INFO 2025-06-26 17:47:16,627 calibrate.py _nudge_pos():1806 [1] 4195: 0.090 -0.0000092 -0.0000286 20 0.06 -21.592 -83.661 2011-04-29T04:17:44.315320832 INFO 2025-06-26 17:47:18,662 calibrate.py _nudge_pos():1806 [1] 4383: 0.090 0.0000389 -0.0000162 50 0.16 35.313 -18.391 2011-04-29T04:21:01.311825664 INFO 2025-06-26 17:47:39,086 calibrate.py _nudge_pos():1806 [1] 6300: 0.100 -0.0000291 -0.0000364 20 0.06 -68.181 -106.427 2011-04-29T04:53:01.310296832 INFO 2025-06-26 17:47:44,467 calibrate.py _nudge_pos():1806 [1] 6814: 0.090 0.0000223 0.0000166 45 0.15 22.556 20.956 2011-04-29T05:01:43.314536960 INFO 2025-06-26 17:47:46,123 calibrate.py _nudge_pos():1806 [1] 6971: 0.090 -0.0000008 -0.0000007 20 0.06 -1.791 -2.130 2011-04-29T05:04:23.313576192 INFO 2025-06-26 17:47:48,748 calibrate.py _nudge_pos():1806 [1] 7219: 0.090 -0.0014896 -0.0029148 9145 30.48 -7.248 -17.721 2011-04-29T05:38:59.311360768 INFO 2025-06-26 17:47:48,981 calibrate.py _nudge_pos():1806 [1] 7241: 0.090 -0.0000162 -0.0000023 20 0.06 -37.865 -6.837 2011-04-29T05:39:24.309648384 INFO 2025-06-26 17:47:49,245 calibrate.py _nudge_pos():1806 [1] 7266: 0.090 -0.0000696 -0.0000149 25 0.08 -128.938 -34.619 2011-04-29T05:39:53.317660928 INFO 2025-06-26 17:47:50,072 calibrate.py _nudge_pos():1806 [1] 7344: 0.090 -0.0016684 -0.0026964 9095 30.31 -8.161 -16.483 2011-04-29T06:11:29.317776128 INFO 2025-06-26 17:47:50,167 calibrate.py _nudge_pos():1806 [1] 7353: 0.090 0.0000037 0.0000124 15 0.05 11.829 49.118 2011-04-29T06:11:40.317022464 INFO 2025-06-26 17:47:50,380 calibrate.py _nudge_pos():1806 [1] 7373: 0.090 0.0000308 -0.0000148 50 0.16 27.957 -16.753 2011-04-29T06:12:09.315036160 INFO 2025-06-26 17:47:51,443 calibrate.py _nudge_pos():1806 [1] 7473: 0.100 -0.0018405 -0.0024311 9200 30.66 -8.900 -14.692 2011-04-29T06:44:29.312137216 INFO 2025-06-26 17:47:52,676 calibrate.py _nudge_pos():1806 [1] 7590: 0.090 0.0000104 -0.0000101 15 0.05 33.101 -40.040 2011-04-29T06:46:28.313985024 INFO 2025-06-26 17:47:52,824 calibrate.py _nudge_pos():1806 [1] 7604: 0.090 -0.0016962 -0.0013922 7920 26.40 -9.526 -9.773 2011-04-29T07:13:05.314583040 INFO 2025-06-26 17:47:52,836 calibrate.py _nudge_pos():1806 [1] 7605: 0.090 -0.0000468 0.0000187 45 0.15 -47.311 23.626 2011-04-29T07:13:14.313966592 INFO 2025-06-26 17:47:53,160 calibrate.py _nudge_pos():1806 [1] 7635: 0.100 -0.0000001 -0.0000028 20 0.06 -0.262 -8.047 2011-04-29T07:13:47.311706112 INFO 2025-06-26 17:47:54,893 calibrate.py _nudge_pos():1806 [1] 7800: 0.100 -0.0000309 -0.0000087 50 0.16 -28.093 -9.912 2011-04-29T07:16:42.309718016 INFO 2025-06-26 17:47:54,905 calibrate.py _nudge_pos():1806 [1] 7801: 0.100 0.0043099 -0.0002146 6985 23.28 27.452 -1.708 2011-04-29T07:39:59.314016512 INFO 2025-06-26 17:47:55,683 calibrate.py _nudge_pos():1806 [1] 7874: 0.090 0.0000096 -0.0000040 15 0.05 30.413 -15.716 2011-04-29T07:41:14.318878208 INFO 2025-06-26 17:47:56,869 calibrate.py _nudge_pos():1806 [1] 7986: 0.100 -0.0000283 -0.0000121 20 0.06 -66.189 -35.491 2011-04-29T07:43:10.310932480 INFO 2025-06-26 17:47:57,120 calibrate.py _nudge_pos():1806 [1] 8009: 0.090 -0.0012102 -0.0031368 6675 22.25 -8.067 -26.127 2011-04-29T08:05:47.317970944 INFO 2025-06-26 17:47:57,154 calibrate.py _nudge_pos():1806 [1] 8012: 0.100 0.0000466 -0.0000195 30 0.10 71.471 -37.321 2011-04-29T08:05:55.317422848 INFO 2025-06-26 17:47:58,986 calibrate.py _nudge_pos():1806 [1] 8184: 0.110 -0.0002813 -0.0000474 9195 30.65 -1.361 -0.286 2011-04-29T08:39:25.309729024 INFO 2025-06-26 17:48:00,415 calibrate.py _nudge_pos():1806 [1] 8315: 0.100 -0.0002938 -0.0032016 9210 30.70 -1.419 -19.326 2011-04-29T09:12:17.314637312 INFO 2025-06-26 17:48:00,668 calibrate.py _nudge_pos():1806 [1] 8337: 0.100 0.0000002 -0.0000041 70 0.23 0.106 -3.267 2011-04-29T09:12:52.312239872 INFO 2025-06-26 17:48:01,710 calibrate.py _nudge_pos():1806 [1] 8430: 0.100 0.0000106 -0.0000096 35 0.11 13.868 -15.687 2011-04-29T09:14:31.315457792 INFO 2025-06-26 17:48:01,722 calibrate.py _nudge_pos():1806 [1] 8431: 0.100 -0.0006037 -0.0006204 3380 11.26 -7.946 -10.206 2011-04-29T09:25:47.319148288 INFO 2025-06-26 17:48:07,918 calibrate.py _nudge_pos():1806 [1] 9004: 0.110 0.0000183 0.0000124 50 0.16 16.637 14.039 2011-04-29T09:35:29.309279232 INFO 2025-06-26 17:48:17,863 calibrate.py _nudge_pos():1806 [1] 9932: 0.120 -0.0000236 -0.0000093 15 0.05 -74.875 -37.018 2011-04-29T09:50:59.315569408 INFO 2025-06-26 17:48:20,685 calibrate.py _nudge_pos():1806 [1] 10195: 0.100 0.0000095 -0.0000037 25 0.08 17.653 -8.628 2011-04-29T09:55:26.317278720 INFO 2025-06-26 17:48:23,938 calibrate.py _nudge_pos():1806 [1] 10499: 0.100 0.0000148 0.0000076 15 0.05 47.111 30.177 2011-04-29T10:00:33.316247808 INFO 2025-06-26 17:48:48,961 calibrate.py _nudge_pos():1806 [1] 12803: 0.110 -0.0016362 -0.0037438 9255 30.85 -7.865 -22.489 2011-04-29T11:09:47.311679488 INFO 2025-06-26 17:48:50,056 calibrate.py _nudge_pos():1806 [1] 12904: 0.110 -0.0014193 -0.0036653 9370 31.23 -6.739 -21.747 2011-04-29T11:42:41.316451072 INFO 2025-06-26 17:48:51,265 calibrate.py _nudge_pos():1806 [1] 13015: 0.120 -0.0010686 -0.0041087 9380 31.26 -5.069 -24.353 2011-04-29T12:15:47.310401024 INFO 2025-06-26 17:48:52,277 calibrate.py _nudge_pos():1862 [1] 13070: - - - 1381 4.60 - - INFO 2025-06-26 17:48:52,277 calibrate.py _nudge_pos():1868 [1] Points in final series = 282751 WARNING 2025-06-26 17:48:52,724 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-06-26 17:48:54,804 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 8 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 17:48:56,871 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 17:48:58,541 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 17:48:58,545 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2011.118.00/ctd1.nc INFO 2025-06-26 17:48:58,546 calibrate.py _range_qc_combined_nc():898 [1] Setting 5 ctd1_salinity values to NaN INFO 2025-06-26 17:48:58,547 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 17:48:58,547 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 17:49:00,551 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 17:49:02,259 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 17:49:02,263 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2011.118.00/ctd2.nc INFO 2025-06-26 17:49:02,264 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 17:49:02,264 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 17:49:02,265 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 17:49:02,347 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 17:49:05,452 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 17:49:05,617 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no time coordinate - likely an incomplete lopc.nc file in missionlogs/2011.118.00 ERROR 2025-06-26 17:49:05,617 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2011.118.00 INFO 2025-06-26 17:49:05,833 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2011.118.00/dorado_2011.118.00_cal.nc INFO 2025-06-26 17:49:06,147 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 17:49:06,153 process.py align():251 [1] Alignment steps for 2011.118.00 INFO 2025-06-26 17:49:06,224 align.py process_cal():139 [1] Processing dorado_2011.118.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2011.118.00 INFO 2025-06-26 17:49:06,300 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:49:06,309 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 17:49:06,484 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:49:06,494 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 17:49:06,670 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:49:06,682 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 17:49:06,787 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 17:49:06,788 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 17:49:06,857 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:49:06,867 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 17:49:07,042 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2011.118.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:49:07,051 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:49:07,203 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2011.118.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:49:07,212 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:49:07,368 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2011.118.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:49:07,377 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:49:07,530 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.118.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:49:07,539 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:49:07,695 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.118.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:49:07,704 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:49:07,856 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.118.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:49:07,865 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:49:08,021 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.118.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:49:08,030 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:49:08,189 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.118.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:49:08,197 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:49:08,349 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.118.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:49:08,358 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:49:08,508 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.118.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:49:08,519 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:49:08,671 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.118.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:49:08,679 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:49:08,834 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.118.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:49:08,843 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:49:08,998 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.118.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:49:09,008 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:49:09,158 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.118.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:49:09,166 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:49:09,320 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.118.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:49:09,329 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:49:09,488 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.118.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:49:09,497 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:49:09,652 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.118.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:49:09,661 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:49:09,815 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.118.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:49:09,824 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:49:09,980 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.118.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:49:09,989 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:49:10,145 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.118.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:49:10,155 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:49:10,310 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.118.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:49:10,319 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:49:10,473 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.118.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:49:10,481 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:49:10,671 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 17:49:10,786 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 17:49:10,903 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 17:49:11,026 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 0.98 INFO 2025-06-26 17:49:11,156 align.py process_cal():249 [1] biolume_avg_biolume: instrument_sample_rate_hz = 0.98 INFO 2025-06-26 17:49:11,385 align.py process_cal():249 [1] biolume_raw: instrument_sample_rate_hz = 58.99 INFO 2025-06-26 17:49:12,919 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 17:49:13,036 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2011.118.00/dorado_2011.118.00_align.nc INFO 2025-06-26 17:49:13,358 align.py write_netcdf():342 [1] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 17:49:13,364 process.py resample():273 [1] Resampling steps for 2011.118.00 INFO 2025-06-26 17:49:13,365 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 17:49:13,425 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2011.118.00/dorado_2011.118.00_align.nc mission netCDF file INFO 2025-06-26 17:49:13,434 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2011.118.00/dorado_2011.118.00_align.nc mission netCDF file INFO 2025-06-26 17:49:13,436 resample.py get_mission_start_end():1145 [1] navigation: 2011-04-28T20:39:24.529185280 to 2011-04-29T12:21:54.515245824 (0 days 00:00:00 before mission_end) INFO 2025-06-26 17:49:13,438 resample.py get_mission_start_end():1145 [1] hs2 : 2011-04-28T20:38:56.671093760 to 2011-04-29T12:21:54.385254656 (0 days 00:00:00.129991168 before mission_end) INFO 2025-06-26 17:49:13,441 resample.py get_mission_start_end():1145 [1] ctd1 : 2011-04-28T20:39:14.549868800 to 2011-04-29T12:21:54.305260288 (0 days 00:00:00.209985536 before mission_end) INFO 2025-06-26 17:49:13,443 resample.py get_mission_start_end():1145 [1] ctd2 : 2011-04-28T20:39:14.799851776 to 2011-04-29T12:21:54.485247744 (0 days 00:00:00.029998080 before mission_end) INFO 2025-06-26 17:49:13,445 resample.py get_mission_start_end():1145 [1] isus : 2011-04-28T20:40:04.766428672 to 2011-04-29T12:21:53.825293056 (0 days 00:00:00.689952768 before mission_end) INFO 2025-06-26 17:49:13,446 resample.py get_mission_start_end():1145 [1] biolume : 2011-04-28T20:38:47.331699200 to 2011-04-29T12:21:53.935251200 (0 days 00:00:00.579994624 before mission_end) INFO 2025-06-26 17:49:13,449 resample.py get_mission_start_end():1145 [1] tailcone : 2011-04-28T20:38:48.401660160 to 2011-04-29T12:21:54.375255296 (0 days 00:00:00.139990528 before mission_end) INFO 2025-06-26 17:49:13,450 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2011.118.00/dorado_2011.118.00_align.nc mission netCDF file INFO 2025-06-26 17:49:13,450 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 17:49:14,020 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 17:49:14,113 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 17:49:14,203 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 17:49:14,292 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 17:49:14,369 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 17:49:14,445 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 17:49:14,521 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 17:49:14,597 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 17:49:14,668 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 17:49:14,739 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 17:49:14,809 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:49:14,879 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:49:14,950 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:49:15,021 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 17:49:15,091 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 17:49:15,160 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 17:49:15,232 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 17:49:15,306 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 17:49:15,378 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 17:49:15,452 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 17:49:15,524 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:49:15,597 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:49:15,669 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:49:15,742 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 17:49:15,770 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 17:49:15,796 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 17:49:15,821 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 17:49:15,846 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 17:49:15,871 resample.py resample_variable():1031 [1] Resampling biolume_avg_biolume with frequency 1S following 3 point median filter INFO 2025-06-26 17:49:15,879 resample.py set_proxy_parameters():520 [1] Setting biolume proxy parameters for period4 INFO 2025-06-26 17:49:15,879 resample.py add_biolume_proxies():549 [1] Adding biolume proxy variables computed from biolume_raw INFO 2025-06-26 17:49:18,007 resample.py add_biolume_proxies():595 [1] Using flash_threshold = 1.0000e+11 INFO 2025-06-26 17:49:18,773 resample.py add_biolume_proxies():638 [1] Computing flashes per liter: nbflash_high, nbflash_low INFO 2025-06-26 17:49:19,009 resample.py add_biolume_proxies():666 [1] Saving flash intensity: biolume_intflash - the upper bound of the background envelope INFO 2025-06-26 17:49:19,098 resample.py add_biolume_proxies():683 [1] Saving Background bioluminescence (dinoflagellates proxy) INFO 2025-06-26 17:49:19,163 resample.py select_nighttime_bl_raw():432 [1] No sunset or sunrise found during this mission. INFO 2025-06-26 17:49:19,163 resample.py add_biolume_proxies():694 [1] No nighttime_bl_raw data to compute adinos, diatoms, hdinos proxies INFO 2025-06-26 17:49:19,265 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 17:49:19,705 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2011.118.00/dorado_2011.118.00_1S.nc INFO 2025-06-26 17:49:22,618 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-26 17:49:26,017 create_products.py gulper_odv():522 [1] Wrote 3 Gulper data lines to /data/auv_data/dorado/missionodvs/2011.118.00/dorado_2011.118.00_1S_Gulper.txt INFO 2025-06-26 17:49:26,017 process.py archive():337 [1] Archiving steps for 2011.118.00 INFO 2025-06-26 17:49:26,017 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2011.118.00/dorado_2011.118.00, BASE_PATH = /data/auv_data INFO 2025-06-26 17:49:26,018 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2011.118.00/dorado_2011.118.00 files to /Volumes/AUVCTD/surveys/2011/netcdf INFO 2025-06-26 17:49:26,019 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2011/netcdf/dorado_2011.118.00_1S.nc INFO 2025-06-26 17:49:26,067 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.118.00/dorado_2011.118.00_1S.nc /Volumes/AUVCTD/surveys/2011/netcdf done. INFO 2025-06-26 17:49:26,068 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2011/netcdf/dorado_2011.118.00_cal.nc INFO 2025-06-26 17:49:26,379 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.118.00/dorado_2011.118.00_cal.nc /Volumes/AUVCTD/surveys/2011/netcdf done. INFO 2025-06-26 17:49:26,380 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2011/netcdf/dorado_2011.118.00_align.nc INFO 2025-06-26 17:49:26,847 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.118.00/dorado_2011.118.00_align.nc /Volumes/AUVCTD/surveys/2011/netcdf done. INFO 2025-06-26 17:49:26,911 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.118.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011118/2011.118.00 done. INFO 2025-06-26 17:49:27,181 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.118.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011118/2011.118.00 done. INFO 2025-06-26 17:49:27,190 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.118.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011118/2011.118.00 done. INFO 2025-06-26 17:49:27,247 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.118.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011118/2011.118.00 done. INFO 2025-06-26 17:49:27,454 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.118.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011118/2011.118.00 done. INFO 2025-06-26 17:49:27,463 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.118.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011118/2011.118.00 done. INFO 2025-06-26 17:49:27,530 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.118.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011118/2011.118.00 done. INFO 2025-06-26 17:49:27,578 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.118.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011118/2011.118.00 done. INFO 2025-06-26 17:49:27,735 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.118.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011118/2011.118.00 done. INFO 2025-06-26 17:49:27,743 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.118.00/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011118/2011.118.00 done. INFO 2025-06-26 17:49:27,743 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 17:49:27,745 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2011/odv/dorado_2011.118.00_1S_Gulper.txt INFO 2025-06-26 17:49:27,749 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2011.118.00/dorado_2011.118.00_1S_Gulper.txt /Volumes/AUVCTD/surveys/2011/odv done. INFO 2025-06-26 17:49:27,749 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.118.00/dorado_2011.118.00_processing.log /Volumes/AUVCTD/surveys/2011/netcdf