INFO 2025-06-26 17:24:00,250 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 17:24:00,250 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Cross-bay Gulper mission for Vrijenhouk Lab - John Ryan - ctdToUse = ctd1 INFO 2025-06-26 17:24:00,250 process.py process_mission():449 [1] Processing AUVCTD mission 2011.074.02 by user docker_user on host eae60d30a712 INFO 2025-06-26 17:24:00,250 process.py download_process():165 [1] Download and processing steps for 2011.074.02 INFO 2025-06-26 17:24:00,250 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2011/2011074/2011.074.02 INFO 2025-06-26 17:24:00,251 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2011/2011074/2011.074.02 to /data/auv_data/dorado/missionlogs/2011.074.02 INFO 2025-06-26 17:24:07,927 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2011.074.02 INFO 2025-06-26 17:24:07,928 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.074.02/ctdDriver.log (23490635 bytes) INFO 2025-06-26 17:24:09,843 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.074.02/ctdDriver2.log (23477855 bytes) INFO 2025-06-26 17:24:11,673 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.074.02/gps.log (386420 bytes) INFO 2025-06-26 17:24:11,723 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.074.02/hydroscatlog.log (20554570 bytes) INFO 2025-06-26 17:24:13,981 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.074.02/navigation.log (72165386 bytes) INFO 2025-06-26 17:24:19,718 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.074.02/isuslog.log (1519701 bytes) INFO 2025-06-26 17:24:19,879 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.074.02/parosci.log (24949478 bytes) INFO 2025-06-26 17:24:22,329 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.074.02/tailCone.log (14689819 bytes) INFO 2025-06-26 17:24:24,365 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.074.02/biolume.log (17093814 bytes) INFO 2025-06-26 17:24:26,064 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 17:24:26,937 logs2netcdfs.py download_process_logs():807 [1] Time to process: 19.01 seconds INFO 2025-06-26 17:24:26,938 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2011.074.02/lopc.bin (170653000 bytes) INFO 2025-06-26 17:24:26,938 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 17:24:26 2025 INFO 2025-06-26 17:24:26,938 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2011.074.02/parosci.nc INFO 2025-06-26 17:24:26,938 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 17:24:26,938 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2011.074.02/parosci.nc INFO 2025-06-26 17:24:26,942 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1300223585.9, sensor_off_time = 1300284792.2 INFO 2025-06-26 17:24:26,942 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 61206 seconds. Expecting to read 122412 L frames from the lopc.bin file. INFO 2025-06-26 17:24:26,942 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 122412 records from the lopc.bin file. INFO 2025-06-26 17:24:27,668 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2011-03-15 21:13:05 Z and endTime = 2011-03-16 14:13:12 Z with 122412 records expected to be read from lopc.bin INFO 2025-06-26 17:24:27,668 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2011.074.02/lopc.bin INFO 2025-06-26 17:24:27,668 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2011.074.02/lopc.nc INFO 2025-06-26 17:24:27,668 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2011.074.02/lopc.nc INFO 2025-06-26 17:24:27,669 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2011.074.02 INFO 2025-06-26 17:24:27,669 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 WARNING 2025-06-26 17:24:27,672 lopcToNetCDF.py readCframeData():665 [1] Unable to parse a float from the string cstr[:70] = A063498 WARNING 2025-06-26 17:24:27,672 lopcToNetCDF.py readCframeData():665 [1] Unable to parse a float from the string cstr[:70] = INFO 2025-06-26 17:24:27,720 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 17:24:27,720 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 17:24:27,720 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ ERROR 2025-06-26 17:24:28,003 process.py download_process():223 [1] UnexpectedAreaOfCode: Encountered unexpected area of code - lopc.nc file is probably corrupt INFO 2025-06-26 17:24:28,005 process.py calibrate():227 [1] Calibration steps for 2011.074.02 INFO 2025-06-26 17:24:28,555 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 17:24:28,557 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 17:24:29,638 calibrate.py _nudge_pos():1806 [1] 148: 0.110 -0.0011553 -0.0005036 7245 24.15 -7.097 -3.864 2011-03-15T21:39:41.098232064 INFO 2025-06-26 17:24:31,272 calibrate.py _nudge_pos():1806 [1] 311: 0.120 -0.0015079 -0.0005870 10050 33.50 -6.675 -3.247 2011-03-15T22:15:53.099439616 INFO 2025-06-26 17:24:32,336 calibrate.py _nudge_pos():1806 [1] 418: 0.120 -0.0011229 -0.0003919 7900 26.33 -6.323 -2.758 2011-03-15T22:43:59.103940608 INFO 2025-06-26 17:24:33,267 calibrate.py _nudge_pos():1806 [1] 510: 0.120 -0.0020265 -0.0010533 10645 35.48 -8.466 -5.501 2011-03-15T23:20:59.101860352 INFO 2025-06-26 17:24:34,201 calibrate.py _nudge_pos():1806 [1] 602: 0.130 -0.0020119 -0.0010296 9340 31.13 -9.577 -6.129 2011-03-15T23:53:38.097659904 INFO 2025-06-26 17:24:35,252 calibrate.py _nudge_pos():1806 [1] 706: 0.130 -0.0012953 -0.0005565 5950 19.83 -9.678 -5.200 2011-03-16T00:15:11.099083264 INFO 2025-06-26 17:24:36,130 calibrate.py _nudge_pos():1806 [1] 794: 0.120 -0.0008285 -0.0004256 3525 11.75 -10.450 -6.714 2011-03-16T00:28:23.094827776 INFO 2025-06-26 17:24:36,967 calibrate.py _nudge_pos():1806 [1] 878: 0.130 -0.0025087 -0.0015484 9815 32.71 -11.359 -8.771 2011-03-16T01:02:29.094667264 INFO 2025-06-26 17:24:37,830 calibrate.py _nudge_pos():1806 [1] 963: 0.130 -0.0018695 -0.0015154 6870 22.90 -12.092 -12.264 2011-03-16T01:26:47.094787328 INFO 2025-06-26 17:24:38,730 calibrate.py _nudge_pos():1806 [1] 1053: 0.130 -0.0015377 -0.0017055 6095 20.31 -11.210 -15.558 2011-03-16T01:48:35.095183104 INFO 2025-06-26 17:24:39,519 calibrate.py _nudge_pos():1806 [1] 1131: 0.130 -0.0006509 -0.0024792 5285 17.61 -5.472 -26.082 2011-03-16T02:07:29.097498624 INFO 2025-06-26 17:24:40,386 calibrate.py _nudge_pos():1806 [1] 1216: 0.140 -0.0000207 -0.0020860 4200 14.00 -0.219 -27.616 2011-03-16T02:22:53.094200576 INFO 2025-06-26 17:24:41,337 calibrate.py _nudge_pos():1806 [1] 1309: 0.140 -0.0002454 -0.0008522 2120 7.06 -5.144 -22.356 2011-03-16T02:31:29.098851584 INFO 2025-06-26 17:24:42,775 calibrate.py _nudge_pos():1806 [1] 1449: 0.140 -0.0019005 -0.0022436 9835 32.78 -8.587 -12.683 2011-03-16T03:06:35.094581248 INFO 2025-06-26 17:24:43,852 calibrate.py _nudge_pos():1806 [1] 1554: 0.130 -0.0015987 -0.0025332 7940 26.46 -8.948 -17.738 2011-03-16T03:34:47.098670848 INFO 2025-06-26 17:24:44,822 calibrate.py _nudge_pos():1806 [1] 1649: 0.130 -0.0000079 -0.0013329 2260 7.53 -0.155 -32.801 2011-03-16T03:43:53.101267456 INFO 2025-06-26 17:24:45,670 calibrate.py _nudge_pos():1806 [1] 1731: 0.130 0.0096908 -0.0030702 12705 42.35 33.911 -13.434 2011-03-16T04:27:35.101647872 INFO 2025-06-26 17:24:46,449 calibrate.py _nudge_pos():1806 [1] 1806: 0.140 0.0000172 -0.0000139 15 0.05 54.517 -55.054 2011-03-16T04:28:52.096373248 INFO 2025-06-26 17:24:46,668 calibrate.py _nudge_pos():1806 [1] 1827: 0.140 0.0104023 -0.0056508 14965 49.88 30.916 -20.992 2011-03-16T05:19:05.099968512 INFO 2025-06-26 17:24:47,480 calibrate.py _nudge_pos():1806 [1] 1905: 0.150 0.0000051 0.0000121 20 0.06 11.968 35.330 2011-03-16T05:20:26.094419968 INFO 2025-06-26 17:24:47,573 calibrate.py _nudge_pos():1806 [1] 1914: 0.140 0.0059704 -0.0049593 10445 34.81 25.429 -26.397 2011-03-16T05:55:23.100765184 INFO 2025-06-26 17:24:48,882 calibrate.py _nudge_pos():1806 [1] 2038: 0.140 0.0060386 -0.0039037 8740 29.13 30.745 -24.832 2011-03-16T06:26:35.102524160 INFO 2025-06-26 17:24:49,801 calibrate.py _nudge_pos():1806 [1] 2125: 0.150 0.0055304 -0.0035257 8120 27.06 30.315 -24.140 2011-03-16T06:55:05.095381760 INFO 2025-06-26 17:24:50,778 calibrate.py _nudge_pos():1806 [1] 2218: 0.150 0.0092662 -0.0045805 12950 43.16 31.858 -19.664 2011-03-16T07:39:47.101651712 INFO 2025-06-26 17:24:51,993 calibrate.py _nudge_pos():1806 [1] 2334: 0.150 0.0064780 -0.0045108 9530 31.76 30.273 -26.315 2011-03-16T08:13:29.103135232 INFO 2025-06-26 17:24:52,607 calibrate.py _nudge_pos():1806 [1] 2392: 0.150 -0.0000565 0.0000029 40 0.13 -64.559 4.177 2011-03-16T08:14:34.098682624 INFO 2025-06-26 17:24:52,702 calibrate.py _nudge_pos():1806 [1] 2401: 0.150 0.0000469 0.0000253 30 0.10 72.025 48.563 2011-03-16T08:14:48.097723648 INFO 2025-06-26 17:24:52,754 calibrate.py _nudge_pos():1806 [1] 2406: 0.160 0.0032126 -0.0036037 6245 20.81 22.915 -32.084 2011-03-16T08:35:41.101886976 INFO 2025-06-26 17:24:53,315 calibrate.py _nudge_pos():1806 [1] 2459: 0.160 0.0000596 -0.0000259 35 0.11 78.025 -42.303 2011-03-16T08:36:40.097845504 INFO 2025-06-26 17:24:53,610 calibrate.py _nudge_pos():1806 [1] 2487: 0.150 0.0017213 -0.0021317 4190 13.96 18.302 -28.289 2011-03-16T08:51:05.098588928 INFO 2025-06-26 17:24:54,775 calibrate.py _nudge_pos():1806 [1] 2597: 0.160 0.0013491 -0.0015412 13610 45.36 4.417 -6.296 2011-03-16T09:38:17.094584064 INFO 2025-06-26 17:24:55,761 calibrate.py _nudge_pos():1806 [1] 2690: 0.170 0.0011858 -0.0004086 11210 37.36 4.715 -2.026 2011-03-16T10:17:11.094693888 INFO 2025-06-26 17:24:56,657 calibrate.py _nudge_pos():1806 [1] 2774: 0.160 -0.0001695 -0.0001719 7985 26.61 -0.946 -1.197 2011-03-16T10:45:11.099605760 INFO 2025-06-26 17:24:56,690 calibrate.py _nudge_pos():1806 [1] 2777: 0.160 -0.0001045 -0.0000140 35 0.11 -137.016 -22.848 2011-03-16T10:45:20.098989312 INFO 2025-06-26 17:24:57,624 calibrate.py _nudge_pos():1806 [1] 2863: 0.170 -0.0004331 -0.0003624 4300 14.33 -4.491 -4.686 2011-03-16T11:01:05.094252544 INFO 2025-06-26 17:24:58,558 calibrate.py _nudge_pos():1806 [1] 2947: 0.170 -0.0006364 -0.0005671 12395 41.31 -2.290 -2.543 2011-03-16T11:43:47.098743296 INFO 2025-06-26 17:24:59,511 calibrate.py _nudge_pos():1806 [1] 3035: 0.180 0.0006951 -0.0087852 13005 43.35 2.384 -37.555 2011-03-16T12:28:35.094603008 INFO 2025-06-26 17:25:00,444 calibrate.py _nudge_pos():1806 [1] 3120: 0.170 0.0024959 -0.0027477 6420 21.40 17.338 -23.796 2011-03-16T12:51:23.100888064 INFO 2025-06-26 17:25:01,456 calibrate.py _nudge_pos():1806 [1] 3212: 0.170 -0.0004893 -0.0000683 9775 32.58 -2.231 -0.388 2011-03-16T13:25:29.100727552 INFO 2025-06-26 17:25:02,193 calibrate.py _nudge_pos():1806 [1] 3279: 0.180 0.0000185 -0.0000167 30 0.10 28.412 -32.056 2011-03-16T13:26:41.095795456 INFO 2025-06-26 17:25:02,239 calibrate.py _nudge_pos():1806 [1] 3283: 0.180 0.0001479 -0.0000583 3495 11.65 1.887 -0.928 2011-03-16T13:38:23.097705216 INFO 2025-06-26 17:25:02,634 calibrate.py _nudge_pos():1806 [1] 3319: 0.180 -0.0000251 -0.0000032 15 0.05 -80.021 -12.797 2011-03-16T13:39:01.095101952 INFO 2025-06-26 17:25:18,592 calibrate.py _nudge_pos():1806 [1] 4778: 0.180 -0.0000136 0.0000280 25 0.08 -25.298 64.799 2011-03-16T14:03:24.094879744 INFO 2025-06-26 17:25:21,492 calibrate.py _nudge_pos():1806 [1] 5044: 0.180 0.0000306 0.0000065 60 0.20 23.138 6.140 2011-03-16T14:08:01.095904000 INFO 2025-06-26 17:25:24,865 calibrate.py _nudge_pos():1862 [1] 5303: - - - 1 0.00 - - INFO 2025-06-26 17:25:24,865 calibrate.py _nudge_pos():1868 [1] Points in final series = 305776 WARNING 2025-06-26 17:25:25,337 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-06-26 17:25:25,734 calibrate.py _hs2_process():2400 [1] Number of bad hs2 points: 594 of 244685 INFO 2025-06-26 17:25:27,597 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 5 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 17:25:29,898 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 35 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 17:25:31,709 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 35 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 17:25:31,713 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2011.074.02/ctd1.nc INFO 2025-06-26 17:25:31,715 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd1_salinity values to NaN INFO 2025-06-26 17:25:31,716 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 17:25:31,716 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 17:25:33,836 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 69 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 17:25:35,696 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 69 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 17:25:35,701 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2011.074.02/ctd2.nc INFO 2025-06-26 17:25:35,702 calibrate.py _range_qc_combined_nc():898 [1] Setting 128 ctd2_salinity values to NaN INFO 2025-06-26 17:25:35,703 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 17:25:35,703 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 17:25:35,796 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 17:25:38,683 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [60 61 62] INFO 2025-06-26 17:25:39,214 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 17:26:34,999 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no time coordinate - likely an incomplete lopc.nc file in missionlogs/2011.074.02 ERROR 2025-06-26 17:26:35,000 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2011.074.02 INFO 2025-06-26 17:26:35,231 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2011.074.02/dorado_2011.074.02_cal.nc INFO 2025-06-26 17:26:35,569 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 17:26:35,579 process.py align():251 [1] Alignment steps for 2011.074.02 INFO 2025-06-26 17:26:35,656 align.py process_cal():139 [1] Processing dorado_2011.074.02_cal.nc from /data/auv_data/dorado/missionnetcdfs/2011.074.02 INFO 2025-06-26 17:26:35,735 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:26:35,744 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 17:26:35,953 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:26:35,965 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 17:26:36,153 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:26:36,167 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 17:26:36,279 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 17:26:36,279 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 17:26:36,356 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:26:36,367 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 17:26:36,554 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2011.074.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:26:36,564 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:26:36,725 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2011.074.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:26:36,734 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:26:36,899 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2011.074.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:26:36,908 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:26:37,070 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.074.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:26:37,079 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:26:37,244 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.074.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:26:37,253 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:26:37,417 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.074.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:26:37,427 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:26:37,594 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.074.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:26:37,603 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:26:37,769 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.074.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:26:37,778 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:26:37,943 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.074.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:26:37,953 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:26:38,125 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.074.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:26:38,137 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:26:38,303 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.074.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:26:38,313 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:26:38,477 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.074.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:26:38,486 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:26:38,657 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.074.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:26:38,667 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:26:38,834 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.074.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:26:38,842 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:26:39,008 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.074.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:26:39,018 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:26:39,183 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.074.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:26:39,193 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:26:39,358 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.074.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:26:39,367 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:26:39,532 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.074.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:26:39,541 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:26:39,708 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.074.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:26:39,719 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:26:39,884 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.074.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:26:39,894 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:26:40,063 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.074.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:26:40,074 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:26:40,241 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.074.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:26:40,250 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:26:40,450 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 17:26:40,575 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 17:26:40,703 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 17:26:40,835 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 0.98 INFO 2025-06-26 17:26:40,975 align.py process_cal():249 [1] biolume_avg_biolume: instrument_sample_rate_hz = 0.98 INFO 2025-06-26 17:26:41,231 align.py process_cal():249 [1] biolume_raw: instrument_sample_rate_hz = 58.99 INFO 2025-06-26 17:26:42,892 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 17:26:43,016 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2011.074.02/dorado_2011.074.02_align.nc INFO 2025-06-26 17:26:43,357 align.py write_netcdf():342 [1] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 17:26:43,363 process.py resample():273 [1] Resampling steps for 2011.074.02 INFO 2025-06-26 17:26:43,364 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 17:26:43,429 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2011.074.02/dorado_2011.074.02_align.nc mission netCDF file INFO 2025-06-26 17:26:43,438 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2011.074.02/dorado_2011.074.02_align.nc mission netCDF file INFO 2025-06-26 17:26:43,441 resample.py get_mission_start_end():1145 [1] navigation: 2011-03-15T21:13:57.104002816 to 2011-03-16T14:13:12.294585344 (0 days 00:00:00.019998720 before mission_end) INFO 2025-06-26 17:26:43,443 resample.py get_mission_start_end():1145 [1] hs2 : 2011-03-15T21:13:11.397134080 to 2011-03-16T14:13:12.214590720 (0 days 00:00:00.099993344 before mission_end) INFO 2025-06-26 17:26:43,446 resample.py get_mission_start_end():1145 [1] ctd1 : 2011-03-15T21:13:41.655061248 to 2011-03-16T14:13:12.314584064 (0 days 00:00:00 before mission_end) INFO 2025-06-26 17:26:43,449 resample.py get_mission_start_end():1145 [1] ctd2 : 2011-03-15T21:14:15.462745088 to 2011-03-16T14:13:12.294585344 (0 days 00:00:00.019998720 before mission_end) INFO 2025-06-26 17:26:43,451 resample.py get_mission_start_end():1145 [1] isus : 2011-03-15T21:14:28.471854080 to 2011-03-16T14:13:12.064600832 (0 days 00:00:00.249983232 before mission_end) INFO 2025-06-26 17:26:43,453 resample.py get_mission_start_end():1145 [1] biolume : 2011-03-15T21:13:05.317516032 to 2011-03-16T14:13:11.124631040 (0 days 00:00:01.189953024 before mission_end) INFO 2025-06-26 17:26:43,455 resample.py get_mission_start_end():1145 [1] tailcone : 2011-03-15T21:13:07.077429760 to 2011-03-16T14:13:12.284585984 (0 days 00:00:00.029998080 before mission_end) INFO 2025-06-26 17:26:43,456 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2011.074.02/dorado_2011.074.02_align.nc mission netCDF file INFO 2025-06-26 17:26:43,457 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 17:26:44,070 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 17:26:44,172 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 17:26:44,270 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 17:26:44,368 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 17:26:44,453 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 17:26:44,539 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 17:26:44,625 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 17:26:44,708 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 17:26:44,786 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 17:26:44,863 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 17:26:44,942 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:26:45,019 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:26:45,097 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:26:45,174 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 17:26:45,251 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 17:26:45,328 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 17:26:45,405 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 17:26:45,486 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 17:26:45,571 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 17:26:45,659 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 17:26:45,741 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:26:45,823 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:26:45,904 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:26:45,986 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 17:26:46,020 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 17:26:46,049 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 17:26:46,077 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 17:26:46,105 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 17:26:46,132 resample.py resample_variable():1031 [1] Resampling biolume_avg_biolume with frequency 1S following 3 point median filter INFO 2025-06-26 17:26:46,141 resample.py set_proxy_parameters():520 [1] Setting biolume proxy parameters for period4 INFO 2025-06-26 17:26:46,142 resample.py add_biolume_proxies():549 [1] Adding biolume proxy variables computed from biolume_raw INFO 2025-06-26 17:26:48,514 resample.py add_biolume_proxies():595 [1] Using flash_threshold = 1.0000e+11 INFO 2025-06-26 17:26:49,354 resample.py add_biolume_proxies():638 [1] Computing flashes per liter: nbflash_high, nbflash_low INFO 2025-06-26 17:26:49,704 resample.py add_biolume_proxies():666 [1] Saving flash intensity: biolume_intflash - the upper bound of the background envelope INFO 2025-06-26 17:26:49,804 resample.py add_biolume_proxies():683 [1] Saving Background bioluminescence (dinoflagellates proxy) INFO 2025-06-26 17:26:49,875 resample.py select_nighttime_bl_raw():432 [1] No sunset or sunrise found during this mission. INFO 2025-06-26 17:26:49,875 resample.py add_biolume_proxies():694 [1] No nighttime_bl_raw data to compute adinos, diatoms, hdinos proxies INFO 2025-06-26 17:26:49,989 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 17:26:50,467 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2011.074.02/dorado_2011.074.02_1S.nc INFO 2025-06-26 17:26:55,965 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-26 17:27:10,381 create_products.py gulper_odv():522 [1] Wrote 10 Gulper data lines to /data/auv_data/dorado/missionodvs/2011.074.02/dorado_2011.074.02_1S_Gulper.txt INFO 2025-06-26 17:27:10,381 process.py archive():337 [1] Archiving steps for 2011.074.02 INFO 2025-06-26 17:27:10,381 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2011.074.02/dorado_2011.074.02, BASE_PATH = /data/auv_data INFO 2025-06-26 17:27:10,383 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2011.074.02/dorado_2011.074.02 files to /Volumes/AUVCTD/surveys/2011/netcdf INFO 2025-06-26 17:27:10,384 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2011/netcdf/dorado_2011.074.02_1S.nc INFO 2025-06-26 17:27:10,432 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.074.02/dorado_2011.074.02_1S.nc /Volumes/AUVCTD/surveys/2011/netcdf done. INFO 2025-06-26 17:27:10,433 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2011/netcdf/dorado_2011.074.02_cal.nc INFO 2025-06-26 17:27:10,804 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.074.02/dorado_2011.074.02_cal.nc /Volumes/AUVCTD/surveys/2011/netcdf done. INFO 2025-06-26 17:27:10,805 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2011/netcdf/dorado_2011.074.02_align.nc INFO 2025-06-26 17:27:11,317 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.074.02/dorado_2011.074.02_align.nc /Volumes/AUVCTD/surveys/2011/netcdf done. INFO 2025-06-26 17:27:11,385 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.074.02/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011074/2011.074.02 done. INFO 2025-06-26 17:27:11,452 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.074.02/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011074/2011.074.02 done. INFO 2025-06-26 17:27:11,458 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.074.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011074/2011.074.02 done. INFO 2025-06-26 17:27:11,516 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.074.02/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011074/2011.074.02 done. INFO 2025-06-26 17:27:11,692 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.074.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011074/2011.074.02 done. INFO 2025-06-26 17:27:11,701 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.074.02/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011074/2011.074.02 done. INFO 2025-06-26 17:27:11,767 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.074.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011074/2011.074.02 done. INFO 2025-06-26 17:27:11,815 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.074.02/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011074/2011.074.02 done. INFO 2025-06-26 17:27:11,972 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.074.02/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011074/2011.074.02 done. INFO 2025-06-26 17:27:11,978 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.074.02/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011074/2011.074.02 done. INFO 2025-06-26 17:27:11,978 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 17:27:11,980 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2011/odv/dorado_2011.074.02_1S_Gulper.txt INFO 2025-06-26 17:27:11,986 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2011.074.02/dorado_2011.074.02_1S_Gulper.txt /Volumes/AUVCTD/surveys/2011/odv done. INFO 2025-06-26 17:27:11,986 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.074.02/dorado_2011.074.02_processing.log /Volumes/AUVCTD/surveys/2011/netcdf