INFO 2025-06-26 17:22:17,485 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 17:22:17,485 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Kanna mission with automated forwarding of stella104 position to TREX via MBARITracking/scripts/drifter.py RabbitMQ and Tom O'Reilly's Tracking APp - ctdToUse = ctd1 INFO 2025-06-26 17:22:17,485 process.py process_mission():449 [1] Processing AUVCTD mission 2011.061.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 17:22:17,485 process.py download_process():165 [1] Download and processing steps for 2011.061.00 INFO 2025-06-26 17:22:17,485 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2011/2011061/2011.061.00 INFO 2025-06-26 17:22:17,486 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2011/2011061/2011.061.00 to /data/auv_data/dorado/missionlogs/2011.061.00 INFO 2025-06-26 17:22:20,188 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2011.061.00 INFO 2025-06-26 17:22:20,188 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.061.00/ctdDriver.log (6199499 bytes) INFO 2025-06-26 17:22:20,625 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.061.00/ctdDriver2.log (6205727 bytes) INFO 2025-06-26 17:22:21,091 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.061.00/gps.log (290228 bytes) INFO 2025-06-26 17:22:21,141 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.061.00/hydroscatlog.log (5434822 bytes) INFO 2025-06-26 17:22:21,710 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.061.00/navigation.log (19041078 bytes) INFO 2025-06-26 17:22:23,073 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.061.00/isuslog.log (401845 bytes) INFO 2025-06-26 17:22:23,115 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2011.061.00/isuslog.log: [ 1 2 3 4 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20] INFO 2025-06-26 17:22:23,117 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.061.00/parosci.log (6518006 bytes) INFO 2025-06-26 17:22:23,676 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.061.00/tailCone.log (3884683 bytes) INFO 2025-06-26 17:22:24,157 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.061.00/biolume.log (4522838 bytes) INFO 2025-06-26 17:22:24,605 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 17:22:24,841 logs2netcdfs.py download_process_logs():807 [1] Time to process: 4.65 seconds INFO 2025-06-26 17:22:24,841 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2011.061.00/lopc.bin (16284000 bytes) INFO 2025-06-26 17:22:24,841 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 17:22:24 2025 INFO 2025-06-26 17:22:24,841 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2011.061.00/parosci.nc INFO 2025-06-26 17:22:24,841 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 17:22:24,842 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2011.061.00/parosci.nc INFO 2025-06-26 17:22:24,845 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1299088755.9, sensor_off_time = 1299104941.2 INFO 2025-06-26 17:22:24,845 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 16185 seconds. Expecting to read 32370 L frames from the lopc.bin file. INFO 2025-06-26 17:22:24,845 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 32370 records from the lopc.bin file. INFO 2025-06-26 17:22:25,038 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2011-03-02 17:59:15 Z and endTime = 2011-03-02 22:29:01 Z with 32370 records expected to be read from lopc.bin INFO 2025-06-26 17:22:25,038 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2011.061.00/lopc.bin INFO 2025-06-26 17:22:25,038 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2011.061.00/lopc.nc INFO 2025-06-26 17:22:25,039 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2011.061.00/lopc.nc INFO 2025-06-26 17:22:25,039 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2011.061.00 INFO 2025-06-26 17:22:25,039 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 INFO 2025-06-26 17:22:25,137 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 17:22:25,137 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 17:22:25,137 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ ERROR 2025-06-26 17:22:25,918 lopcToNetCDF.py main():2340 [1] UnicodeDecodeError: 'utf-8' codec can't decode byte 0x9b in position 0: invalid start byte INFO 2025-06-26 17:22:25,918 lopcToNetCDF.py main():2341 [1] Failed to decode all of lopc.bin - resulting lopc.nc file likely incomplete INFO 2025-06-26 17:22:25,918 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2011.061.00/parosci.nc INFO 2025-06-26 17:22:25,918 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 17:22:25,918 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2011.061.00/parosci.nc INFO 2025-06-26 17:22:25,921 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1299088755.9, sensor_off_time = 1299104941.2 INFO 2025-06-26 17:22:25,922 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 16185 seconds. Expecting to read 32370 L frames from the lopc.bin file. INFO 2025-06-26 17:22:25,922 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 32370 records from the lopc.bin file. INFO 2025-06-26 17:22:25,922 lopcToNetCDF.py constructTimestampList():1340 [1] Calling correctSampleCountList() with sampleCountList[0] = 1 and len(sampleCountList) = 855 INFO 2025-06-26 17:22:25,922 lopcToNetCDF.py correctSampleCountList():1737 [1] Found overflows at indices: [] INFO 2025-06-26 17:22:25,922 lopcToNetCDF.py correctSampleCountList():1745 [1] Original sampleCountList = [ 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691 692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709 710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727 728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743 744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761 762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779 780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797 798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815 816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833 834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851 852 853 854 855] INFO 2025-06-26 17:22:25,925 lopcToNetCDF.py correctSampleCountList():1746 [1] Found 0 0 values at indices: [] INFO 2025-06-26 17:22:25,925 lopcToNetCDF.py correctSampleCountList():1779 [1] Found 0 stuck values at indices: [] INFO 2025-06-26 17:22:25,925 lopcToNetCDF.py deSpike():1588 [1] d_sampleCountList = [1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1] INFO 2025-06-26 17:22:25,928 lopcToNetCDF.py deSpike():1590 [1] Found 0 spike indicators at indices: [] INFO 2025-06-26 17:22:25,928 lopcToNetCDF.py correctSampleCountList():1805 [1] After despike() sampleCountList = [ 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691 692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709 710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727 728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743 744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761 762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779 780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797 798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815 816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833 834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851 852 853 854 855] INFO 2025-06-26 17:22:25,931 lopcToNetCDF.py constructTimestampList():1347 [1] correctSampleCountList() returned correctedSampleCountList = [ 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691 692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709 710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727 728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743 744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761 762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779 780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797 798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815 816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833 834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851 852 853 854 855] with len(correctedSampleCountList) = 855 INFO 2025-06-26 17:22:25,933 lopcToNetCDF.py constructTimestampList():1358 [1] Subtracting 1 from all values of correctedSampleCountList INFO 2025-06-26 17:22:25,933 lopcToNetCDF.py constructTimestampList():1363 [1] Constructing timestampArray from instrument corrected sampleCount and constant deltaT = 0.500000 INFO 2025-06-26 17:22:25,933 lopcToNetCDF.py constructTimestampList():1368 [1] New re-zeroed correctedSampleCountList = [ 0. 0.5 1. 1.5 2. 2.5 3. 3.5 4. 4.5 5. 5.5 6. 6.5 7. 7.5 8. 8.5 9. 9.5 10. 10.5 11. 11.5 12. 12.5 13. 13.5 14. 14.5 15. 15.5 16. 16.5 17. 17.5 18. 18.5 19. 19.5 20. 20.5 21. 21.5 22. 22.5 23. 23.5 24. 24.5 25. 25.5 26. 26.5 27. 27.5 28. 28.5 29. 29.5 30. 30.5 31. 31.5 32. 32.5 33. 33.5 34. 34.5 35. 35.5 36. 36.5 37. 37.5 38. 38.5 39. 39.5 40. 40.5 41. 41.5 42. 42.5 43. 43.5 44. 44.5 45. 45.5 46. 46.5 47. 47.5 48. 48.5 49. 49.5 50. 50.5 51. 51.5 52. 52.5 53. 53.5 54. 54.5 55. 55.5 56. 56.5 57. 57.5 58. 58.5 59. 59.5 60. 60.5 61. 61.5 62. 62.5 63. 63.5 64. 64.5 65. 65.5 66. 66.5 67. 67.5 68. 68.5 69. 69.5 70. 70.5 71. 71.5 72. 72.5 73. 73.5 74. 74.5 75. 75.5 76. 76.5 77. 77.5 78. 78.5 79. 79.5 80. 80.5 81. 81.5 82. 82.5 83. 83.5 84. 84.5 85. 85.5 86. 86.5 87. 87.5 88. 88.5 89. 89.5 90. 90.5 91. 91.5 92. 92.5 93. 93.5 94. 94.5 95. 95.5 96. 96.5 97. 97.5 98. 98.5 99. 99.5 100. 100.5 101. 101.5 102. 102.5 103. 103.5 104. 104.5 105. 105.5 106. 106.5 107. 107.5 108. 108.5 109. 109.5 110. 110.5 111. 111.5 112. 112.5 113. 113.5 114. 114.5 115. 115.5 116. 116.5 117. 117.5 118. 118.5 119. 119.5 120. 120.5 121. 121.5 122. 122.5 123. 123.5 124. 124.5 125. 125.5 126. 126.5 127. 127.5 128. 128.5 129. 129.5 130. 130.5 131. 131.5 132. 132.5 133. 133.5 134. 134.5 135. 135.5 136. 136.5 137. 137.5 138. 138.5 139. 139.5 140. 140.5 141. 141.5 142. 142.5 143. 143.5 144. 144.5 145. 145.5 146. 146.5 147. 147.5 148. 148.5 149. 149.5 150. 150.5 151. 151.5 152. 152.5 153. 153.5 154. 154.5 155. 155.5 156. 156.5 157. 157.5 158. 158.5 159. 159.5 160. 160.5 161. 161.5 162. 162.5 163. 163.5 164. 164.5 165. 165.5 166. 166.5 167. 167.5 168. 168.5 169. 169.5 170. 170.5 171. 171.5 172. 172.5 173. 173.5 174. 174.5 175. 175.5 176. 176.5 177. 177.5 178. 178.5 179. 179.5 180. 180.5 181. 181.5 182. 182.5 183. 183.5 184. 184.5 185. 185.5 186. 186.5 187. 187.5 188. 188.5 189. 189.5 190. 190.5 191. 191.5 192. 192.5 193. 193.5 194. 194.5 195. 195.5 196. 196.5 197. 197.5 198. 198.5 199. 199.5 200. 200.5 201. 201.5 202. 202.5 203. 203.5 204. 204.5 205. 205.5 206. 206.5 207. 207.5 208. 208.5 209. 209.5 210. 210.5 211. 211.5 212. 212.5 213. 213.5 214. 214.5 215. 215.5 216. 216.5 217. 217.5 218. 218.5 219. 219.5 220. 220.5 221. 221.5 222. 222.5 223. 223.5 224. 224.5 225. 225.5 226. 226.5 227. 227.5 228. 228.5 229. 229.5 230. 230.5 231. 231.5 232. 232.5 233. 233.5 234. 234.5 235. 235.5 236. 236.5 237. 237.5 238. 238.5 239. 239.5 240. 240.5 241. 241.5 242. 242.5 243. 243.5 244. 244.5 245. 245.5 246. 246.5 247. 247.5 248. 248.5 249. 249.5 250. 250.5 251. 251.5 252. 252.5 253. 253.5 254. 254.5 255. 255.5 256. 256.5 257. 257.5 258. 258.5 259. 259.5 260. 260.5 261. 261.5 262. 262.5 263. 263.5 264. 264.5 265. 265.5 266. 266.5 267. 267.5 268. 268.5 269. 269.5 270. 270.5 271. 271.5 272. 272.5 273. 273.5 274. 274.5 275. 275.5 276. 276.5 277. 277.5 278. 278.5 279. 279.5 280. 280.5 281. 281.5 282. 282.5 283. 283.5 284. 284.5 285. 285.5 286. 286.5 287. 287.5 288. 288.5 289. 289.5 290. 290.5 291. 291.5 292. 292.5 293. 293.5 294. 294.5 295. 295.5 296. 296.5 297. 297.5 298. 298.5 299. 299.5 300. 300.5 301. 301.5 302. 302.5 303. 303.5 304. 304.5 305. 305.5 306. 306.5 307. 307.5 308. 308.5 309. 309.5 310. 310.5 311. 311.5 312. 312.5 313. 313.5 314. 314.5 315. 315.5 316. 316.5 317. 317.5 318. 318.5 319. 319.5 320. 320.5 321. 321.5 322. 322.5 323. 323.5 324. 324.5 325. 325.5 326. 326.5 327. 327.5 328. 328.5 329. 329.5 330. 330.5 331. 331.5 332. 332.5 333. 333.5 334. 334.5 335. 335.5 336. 336.5 337. 337.5 338. 338.5 339. 339.5 340. 340.5 341. 341.5 342. 342.5 343. 343.5 344. 344.5 345. 345.5 346. 346.5 347. 347.5 348. 348.5 349. 349.5 350. 350.5 351. 351.5 352. 352.5 353. 353.5 354. 354.5 355. 355.5 356. 356.5 357. 357.5 358. 358.5 359. 359.5 360. 360.5 361. 361.5 362. 362.5 363. 363.5 364. 364.5 365. 365.5 366. 366.5 367. 367.5 368. 368.5 369. 369.5 370. 370.5 371. 371.5 372. 372.5 373. 373.5 374. 374.5 375. 375.5 376. 376.5 377. 377.5 378. 378.5 379. 379.5 380. 380.5 381. 381.5 382. 382.5 383. 383.5 384. 384.5 385. 385.5 386. 386.5 387. 387.5 388. 388.5 389. 389.5 390. 390.5 391. 391.5 392. 392.5 393. 393.5 394. 394.5 395. 395.5 396. 396.5 397. 397.5 398. 398.5 399. 399.5 400. 400.5 401. 401.5 402. 402.5 403. 403.5 404. 404.5 405. 405.5 406. 406.5 407. 407.5 408. 408.5 409. 409.5 410. 410.5 411. 411.5 412. 412.5 413. 413.5 414. 414.5 415. 415.5 416. 416.5 417. 417.5 418. 418.5 419. 419.5 420. 420.5 421. 421.5 422. 422.5 423. 423.5 424. 424.5 425. 425.5 426. 426.5 427. ] INFO 2025-06-26 17:22:25,940 lopcToNetCDF.py constructTimestampList():1379 [1] timestampArray = [1.29908876e+09 1.29908876e+09 1.29908876e+09 1.29908876e+09 1.29908876e+09 1.29908876e+09 1.29908876e+09 1.29908876e+09 1.29908876e+09 1.29908876e+09 1.29908876e+09 1.29908876e+09 1.29908876e+09 1.29908876e+09 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1.29908916e+09 1.29908916e+09 1.29908916e+09 1.29908916e+09 1.29908916e+09 1.29908916e+09 1.29908916e+09 1.29908916e+09 1.29908916e+09 1.29908916e+09 1.29908916e+09 1.29908916e+09 1.29908916e+09 1.29908917e+09 1.29908917e+09 1.29908917e+09 1.29908917e+09 1.29908917e+09 1.29908917e+09 1.29908917e+09 1.29908917e+09 1.29908917e+09 1.29908917e+09 1.29908917e+09 1.29908917e+09 1.29908917e+09 1.29908917e+09 1.29908917e+09 1.29908917e+09 1.29908917e+09 1.29908917e+09 1.29908917e+09 1.29908917e+09 1.29908918e+09 1.29908918e+09 1.29908918e+09 1.29908918e+09 1.29908918e+09 1.29908918e+09 1.29908918e+09 1.29908918e+09 1.29908918e+09 1.29908918e+09 1.29908918e+09 1.29908918e+09 1.29908918e+09 1.29908918e+09 1.29908918e+09 1.29908918e+09] INFO 2025-06-26 17:22:25,948 lopcToNetCDF.py constructTimestampList():1380 [1] timestampArray[:2] = [1299088755.9 1299088756.4, ..., timestampArray[-2:] = 1299089182.4 1299089182.9] INFO 2025-06-26 17:22:25,949 lopcToNetCDF.py constructTimestampList():1389 [1] timestampList[:2] = [np.float64(1299088755.9396837), np.float64(1299088756.4396837)], ..., timestampList[-2:] = [np.float64(1299089182.4396837), np.float64(1299089182.9396837)]] INFO 2025-06-26 17:22:25,949 lopcToNetCDF.py constructTimestampList():1394 [1] Subsampling correctedSampleCountList (len = 855) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 17:22:25,949 lopcToNetCDF.py constructTimestampList():1399 [1] lFrameCountWrittenList[:2] = [20, 41], ... lFrameCountWrittenList[-2:] = [818, 839] INFO 2025-06-26 17:22:25,949 lopcToNetCDF.py constructTimestampList():1420 [1] len(subSampledCorrectedSampleCountList) = 40 INFO 2025-06-26 17:22:25,949 lopcToNetCDF.py constructTimestampList():1439 [1] len(timestampList) = 855 INFO 2025-06-26 17:22:25,949 lopcToNetCDF.py constructTimestampList():1440 [1] timestampList[:2] = [np.float64(1299088755.9396837), np.float64(1299088756.4396837)], ..., timestampList[-2:] = [np.float64(1299089182.4396837), np.float64(1299089182.9396837)]] INFO 2025-06-26 17:22:25,949 lopcToNetCDF.py constructTimestampList():1446 [1] Subsampling timestampList (len = 855) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 17:22:25,949 lopcToNetCDF.py constructTimestampList():1457 [1] Taking indices [[np.int32(19), np.int32(40)] ... [np.int32(817), np.int32(838)]] from timestampList to create subSampledTimestampList INFO 2025-06-26 17:22:25,949 lopcToNetCDF.py constructTimestampList():1463 [1] len(subSampledTimestampList) = 40 INFO 2025-06-26 17:22:25,949 lopcToNetCDF.py constructTimestampList():1477 [1] Finding elements of cFrameEsecsList that != -9999 INFO 2025-06-26 17:22:25,951 lopcToNetCDF.py closeNetCDFFile():2096 [1] Writing time axis for len(tsList) = 40 INFO 2025-06-26 17:22:25,951 lopcToNetCDF.py closeNetCDFFile():2099 [1] tsList[:1] = [np.float64(1299088765.4396837)], ..., tsList[-2:] = [np.float64(1299089164.4396837), np.float64(1299089174.9396837)] INFO 2025-06-26 17:22:25,951 lopcToNetCDF.py closeNetCDFFile():2100 [1] Begin time = 2011-03-02 17:59:25 Z INFO 2025-06-26 17:22:25,951 lopcToNetCDF.py closeNetCDFFile():2103 [1] End time = 2011-03-02 18:06:14 Z INFO 2025-06-26 17:22:25,951 lopcToNetCDF.py closeNetCDFFile():2107 [1] Writing time axis for len(cFrameEsecsList) = 40 INFO 2025-06-26 17:22:25,951 lopcToNetCDF.py closeNetCDFFile():2111 [1] cFrameEsecsList[:1] = [1.29908877e+09], ..., cFrameEsecsList[-2:] = [1.29908916e+09 1.29908918e+09] INFO 2025-06-26 17:22:25,952 lopcToNetCDF.py closeNetCDFFile():2116 [1] Begin time = 2011-03-02 17:59:25 Z INFO 2025-06-26 17:22:25,952 lopcToNetCDF.py closeNetCDFFile():2120 [1] End time = 2011-03-02 18:06:15 Z INFO 2025-06-26 17:22:25,956 lopcToNetCDF.py main():2381 [1] Created file: /data/auv_data/dorado/missionnetcdfs/2011.061.00/lopc.nc INFO 2025-06-26 17:22:25,956 lopcToNetCDF.py main():2384 [1] Processing finished: Thu Jun 26 17:22:25 2025 Elapsed processing time from start of processing = 1 seconds INFO 2025-06-26 17:22:25,956 process.py calibrate():227 [1] Calibration steps for 2011.061.00 INFO 2025-06-26 17:22:26,121 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 17:22:26,123 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 17:22:31,842 calibrate.py _nudge_pos():1806 [1] 654: 0.100 -0.0010279 -0.0045052 7305 24.35 -6.273 -34.289 2011-03-02T18:34:29.084923392 INFO 2025-06-26 17:22:32,879 calibrate.py _nudge_pos():1806 [1] 765: 0.110 0.0028740 -0.0027980 9260 30.86 13.837 -16.799 2011-03-02T19:07:11.080517376 INFO 2025-06-26 17:22:35,055 calibrate.py _nudge_pos():1806 [1] 997: 0.110 0.0007850 -0.0001910 4515 15.05 7.751 -2.353 2011-03-02T19:26:05.082832896 INFO 2025-06-26 17:22:37,874 calibrate.py _nudge_pos():1806 [1] 1297: 0.110 0.0000500 -0.0000877 25 0.08 92.901 -203.264 2011-03-02T19:31:09.082007296 INFO 2025-06-26 17:22:40,689 calibrate.py _nudge_pos():1806 [1] 1596: 0.100 0.0030786 -0.0046583 9200 30.66 14.918 -28.150 2011-03-02T20:06:47.085544192 INFO 2025-06-26 17:22:42,799 calibrate.py _nudge_pos():1806 [1] 1820: 0.120 0.0000149 0.0000721 60 0.20 11.236 67.970 2011-03-02T20:10:42.079446016 INFO 2025-06-26 17:22:42,855 calibrate.py _nudge_pos():1806 [1] 1826: 0.110 0.0000870 -0.0000185 60 0.20 65.737 -17.398 2011-03-02T20:10:59.078281472 INFO 2025-06-26 17:22:42,884 calibrate.py _nudge_pos():1806 [1] 1829: 0.120 0.0013546 -0.0025333 5960 19.86 10.132 -23.632 2011-03-02T20:30:53.076487168 INFO 2025-06-26 17:22:49,950 calibrate.py _nudge_pos():1806 [1] 2574: 0.120 0.0026279 -0.0035434 8370 27.90 13.995 -23.536 2011-03-02T21:11:11.080842496 INFO 2025-06-26 17:22:50,133 calibrate.py _nudge_pos():1806 [1] 2593: 0.120 0.0000401 0.0000965 40 0.13 45.808 137.497 2011-03-02T21:11:37.079061504 INFO 2025-06-26 17:22:50,341 calibrate.py _nudge_pos():1806 [1] 2615: 0.130 0.0000253 0.0000123 65 0.21 17.615 10.672 2011-03-02T21:12:11.076732416 INFO 2025-06-26 17:22:52,190 calibrate.py _nudge_pos():1806 [1] 2810: 0.120 0.0012893 -0.0026776 5900 19.66 9.741 -25.232 2011-03-02T21:35:05.082606592 INFO 2025-06-26 17:22:52,287 calibrate.py _nudge_pos():1806 [1] 2820: 0.120 0.0000629 0.0000195 75 0.25 37.864 14.665 2011-03-02T21:35:29.080962560 INFO 2025-06-26 17:22:54,876 calibrate.py _nudge_pos():1806 [1] 3091: 0.120 0.0000050 -0.0000089 60 0.20 3.793 -8.369 2011-03-02T21:40:11.081644032 INFO 2025-06-26 17:22:56,152 calibrate.py _nudge_pos():1806 [1] 3226: 0.120 0.0000993 -0.0000802 55 0.18 81.940 -82.536 2011-03-02T21:42:36.081711104 INFO 2025-06-26 17:22:56,190 calibrate.py _nudge_pos():1806 [1] 3230: 0.120 0.0025423 -0.0038229 9190 30.63 12.330 -23.127 2011-03-02T22:13:17.085593600 INFO 2025-06-26 17:22:56,229 calibrate.py _nudge_pos():1806 [1] 3234: 0.120 0.0000732 -0.0000595 30 0.10 112.460 -114.012 2011-03-02T22:13:26.084977152 INFO 2025-06-26 17:22:56,441 calibrate.py _nudge_pos():1806 [1] 3256: 0.120 0.0000248 0.0000112 65 0.21 17.272 9.764 2011-03-02T22:14:00.082648064 INFO 2025-06-26 17:22:57,129 calibrate.py _nudge_pos():1806 [1] 3326: 0.130 0.0000180 0.0000137 70 0.23 11.659 11.008 2011-03-02T22:15:23.076962560 INFO 2025-06-26 17:22:57,360 calibrate.py _nudge_pos():1806 [1] 3350: 0.120 0.0000276 0.0000170 65 0.21 19.187 14.734 2011-03-02T22:15:59.084495872 INFO 2025-06-26 17:22:57,454 calibrate.py _nudge_pos():1806 [1] 3359: 0.120 0.0000291 0.0000167 50 0.16 26.428 18.940 2011-03-02T22:16:17.083262976 INFO 2025-06-26 17:22:57,682 calibrate.py _nudge_pos():1806 [1] 3381: 0.130 0.0000287 0.0000351 75 0.25 17.300 26.404 2011-03-02T22:16:53.080796928 INFO 2025-06-26 17:22:58,195 calibrate.py _nudge_pos():1806 [1] 3435: 0.130 0.0000185 0.0000209 65 0.21 12.858 18.112 2011-03-02T22:17:59.076275712 INFO 2025-06-26 17:22:58,765 calibrate.py _nudge_pos():1806 [1] 3495: 0.130 0.0000289 0.0000125 95 0.31 13.684 7.420 2011-03-02T22:19:17.080932096 INFO 2025-06-26 17:22:59,060 calibrate.py _nudge_pos():1806 [1] 3526: 0.130 0.0000008 0.0000133 95 0.31 0.401 7.889 2011-03-02T22:20:06.077575680 INFO 2025-06-26 17:22:59,816 calibrate.py _nudge_pos():1806 [1] 3605: 0.130 0.0000053 0.0000209 55 0.18 4.399 21.532 2011-03-02T22:21:35.081478656 INFO 2025-06-26 17:22:59,836 calibrate.py _nudge_pos():1806 [1] 3607: 0.130 0.0000075 -0.0000319 15 0.05 23.858 -126.661 2011-03-02T22:21:39.081204480 INFO 2025-06-26 17:23:00,041 calibrate.py _nudge_pos():1806 [1] 3628: 0.130 0.0000208 0.0000216 90 0.30 10.421 13.465 2011-03-02T22:22:17.078601472 INFO 2025-06-26 17:23:03,007 calibrate.py _nudge_pos():1806 [1] 3932: 0.130 0.0000341 0.0000156 75 0.25 20.510 11.714 2011-03-02T22:27:35.076817152 INFO 2025-06-26 17:23:03,842 calibrate.py _nudge_pos():1862 [1] 3968: - - - 0 0.00 - - INFO 2025-06-26 17:23:03,842 calibrate.py _nudge_pos():1868 [1] Points in final series = 80674 INFO 2025-06-26 17:23:03,945 calibrate.py _depth_process():2162 [1] Removing depths outside of valid_depth_range=Range(min=-1, max=50) for self.args.mission=2011.061.00 INFO 2025-06-26 17:23:03,948 calibrate.py _depth_process():2175 [1] Setting 40 depths values to NaN WARNING 2025-06-26 17:23:03,950 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-06-26 17:23:04,547 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 5 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 17:23:05,152 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 42 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 17:23:05,631 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 42 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 17:23:05,633 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2011.061.00/ctd1.nc INFO 2025-06-26 17:23:05,634 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 17:23:05,635 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 17:23:05,635 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 17:23:06,212 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 17:23:06,693 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 17:23:06,695 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2011.061.00/ctd2.nc INFO 2025-06-26 17:23:06,696 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 17:23:06,697 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 17:23:06,697 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 17:23:07,306 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 17:23:08,207 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 17:23:08,249 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2011.061.00 INFO 2025-06-26 17:23:08,315 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2011.061.00/dorado_2011.061.00_cal.nc INFO 2025-06-26 17:23:08,444 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_flowSpeed, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 17:23:08,450 process.py align():251 [1] Alignment steps for 2011.061.00 INFO 2025-06-26 17:23:08,489 align.py process_cal():139 [1] Processing dorado_2011.061.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2011.061.00 INFO 2025-06-26 17:23:08,515 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:23:08,518 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 17:23:08,576 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:23:08,580 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 17:23:08,638 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:23:08,643 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 17:23:08,676 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 17:23:08,677 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 17:23:08,698 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:23:08,703 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 17:23:08,759 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2011.061.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:23:08,763 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:23:08,812 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2011.061.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:23:08,816 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:23:08,875 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2011.061.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:23:08,879 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:23:08,928 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.061.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:23:08,932 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:23:08,984 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.061.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:23:08,988 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:23:09,039 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.061.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:23:09,043 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:23:09,095 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.061.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:23:09,099 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:23:09,150 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.061.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:23:09,154 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:23:09,205 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.061.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:23:09,210 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:23:09,258 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.061.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:23:09,263 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:23:09,314 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.061.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:23:09,318 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:23:09,368 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.061.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:23:09,372 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:23:09,422 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.061.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:23:09,426 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:23:09,474 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.061.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:23:09,478 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:23:09,529 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.061.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:23:09,533 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:23:09,582 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.061.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:23:09,587 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:23:09,638 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.061.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:23:09,642 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:23:09,693 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.061.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:23:09,698 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:23:09,750 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.061.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:23:09,755 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:23:09,808 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.061.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:23:09,813 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:23:09,864 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.061.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:23:09,868 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:23:09,919 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.061.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:23:09,923 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:23:09,984 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 17:23:10,029 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 17:23:10,072 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 17:23:10,119 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 0.98 INFO 2025-06-26 17:23:10,165 align.py process_cal():249 [1] biolume_avg_biolume: instrument_sample_rate_hz = 0.98 INFO 2025-06-26 17:23:10,237 align.py process_cal():249 [1] biolume_raw: instrument_sample_rate_hz = 58.99 INFO 2025-06-26 17:23:10,653 align.py process_cal():249 [1] lopc_countListSum: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 17:23:10,693 align.py process_cal():249 [1] lopc_transCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 17:23:10,733 align.py process_cal():249 [1] lopc_nonTransCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 17:23:10,772 align.py process_cal():249 [1] lopc_LCcount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 17:23:10,814 align.py process_cal():249 [1] lopc_flowSpeed: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 17:23:10,854 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 17:23:10,898 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2011.061.00/dorado_2011.061.00_align.nc INFO 2025-06-26 17:23:11,037 align.py write_netcdf():342 [1] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_depth, lopc_flowSpeed, lopc_latitude, lopc_longitude, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 17:23:11,040 process.py resample():273 [1] Resampling steps for 2011.061.00 INFO 2025-06-26 17:23:11,041 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 17:23:11,078 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2011.061.00/dorado_2011.061.00_align.nc mission netCDF file INFO 2025-06-26 17:23:11,084 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2011.061.00/dorado_2011.061.00_align.nc mission netCDF file INFO 2025-06-26 17:23:11,086 resample.py get_mission_start_end():1145 [1] navigation: 2011-03-02T18:00:06.496220416 to 2011-03-02T22:29:01.080925440 (0 days 00:00:00.159989248 before mission_end) INFO 2025-06-26 17:23:11,087 resample.py get_mission_start_end():1145 [1] hs2 : 2011-03-02T17:59:21.709288448 to 2011-03-02T22:29:01.200917248 (0 days 00:00:00.039997440 before mission_end) INFO 2025-06-26 17:23:11,089 resample.py get_mission_start_end():1145 [1] ctd1 : 2011-03-02T17:59:58.456770816 to 2011-03-02T22:29:01.100923904 (0 days 00:00:00.139990784 before mission_end) INFO 2025-06-26 17:23:11,090 resample.py get_mission_start_end():1145 [1] ctd2 : 2011-03-02T17:59:42.807843072 to 2011-03-02T22:29:01.180918784 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-26 17:23:11,092 resample.py get_mission_start_end():1145 [1] isus : 2011-03-02T18:00:23.455058688 to 2011-03-02T22:29:01.050927616 (0 days 00:00:00.189987072 before mission_end) INFO 2025-06-26 17:23:11,093 resample.py get_mission_start_end():1145 [1] biolume : 2011-03-02T17:59:15.089707520 to 2011-03-02T22:29:00.610923520 (0 days 00:00:00.629991168 before mission_end) INFO 2025-06-26 17:23:11,095 resample.py get_mission_start_end():1145 [1] lopc : 2011-03-02T17:59:25.439683584 to 2011-03-02T18:06:14.939683584 (0 days 04:22:46.301231104 before mission_end) WARNING 2025-06-26 17:23:11,095 resample.py get_mission_start_end():1156 [1] Instrument lopc has a gap > 5 minutes at the end of the mission: 0 days 04:22:46.301231104 INFO 2025-06-26 17:23:11,096 resample.py get_mission_start_end():1145 [1] tailcone : 2011-03-02T17:59:17.249593856 to 2011-03-02T22:29:01.240914688 (0 days 00:00:00 before mission_end) INFO 2025-06-26 17:23:11,097 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2011.061.00/dorado_2011.061.00_align.nc mission netCDF file INFO 2025-06-26 17:23:11,098 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 17:23:11,280 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 17:23:11,313 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 17:23:11,346 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 17:23:11,379 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 17:23:11,408 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 17:23:11,438 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 17:23:11,466 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 17:23:11,493 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 17:23:11,518 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 17:23:11,544 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 17:23:11,569 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:23:11,595 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:23:11,620 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:23:11,645 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 17:23:11,670 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 17:23:11,696 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 17:23:11,721 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 17:23:11,749 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 17:23:11,777 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 17:23:11,804 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 17:23:11,831 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:23:11,858 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:23:11,886 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:23:11,919 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 17:23:11,933 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 17:23:11,946 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 17:23:11,959 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 17:23:11,971 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 17:23:11,983 resample.py resample_variable():1031 [1] Resampling biolume_avg_biolume with frequency 1S following 3 point median filter INFO 2025-06-26 17:23:11,987 resample.py set_proxy_parameters():520 [1] Setting biolume proxy parameters for period4 INFO 2025-06-26 17:23:11,987 resample.py add_biolume_proxies():549 [1] Adding biolume proxy variables computed from biolume_raw INFO 2025-06-26 17:23:12,488 resample.py add_biolume_proxies():595 [1] Using flash_threshold = 1.0000e+11 INFO 2025-06-26 17:23:12,605 resample.py add_biolume_proxies():638 [1] Computing flashes per liter: nbflash_high, nbflash_low INFO 2025-06-26 17:23:12,656 resample.py add_biolume_proxies():666 [1] Saving flash intensity: biolume_intflash - the upper bound of the background envelope INFO 2025-06-26 17:23:12,681 resample.py add_biolume_proxies():683 [1] Saving Background bioluminescence (dinoflagellates proxy) INFO 2025-06-26 17:23:12,702 resample.py select_nighttime_bl_raw():432 [1] No sunset or sunrise found during this mission. INFO 2025-06-26 17:23:12,702 resample.py add_biolume_proxies():694 [1] No nighttime_bl_raw data to compute adinos, diatoms, hdinos proxies INFO 2025-06-26 17:23:12,720 resample.py resample_variable():1031 [1] Resampling lopc_countListSum with frequency 1S following 3 point median filter INFO 2025-06-26 17:23:12,720 resample.py resample_variable():1038 [1] Padding lopc_countListSum with 0 days 04:22:46.301231104 of NaNs to the end of mission INFO 2025-06-26 17:23:12,730 resample.py resample_variable():1031 [1] Resampling lopc_transCount with frequency 1S following 3 point median filter INFO 2025-06-26 17:23:12,730 resample.py resample_variable():1038 [1] Padding lopc_transCount with 0 days 04:22:46.301231104 of NaNs to the end of mission INFO 2025-06-26 17:23:12,740 resample.py resample_variable():1031 [1] Resampling lopc_nonTransCount with frequency 1S following 3 point median filter INFO 2025-06-26 17:23:12,740 resample.py resample_variable():1038 [1] Padding lopc_nonTransCount with 0 days 04:22:46.301231104 of NaNs to the end of mission INFO 2025-06-26 17:23:12,750 resample.py resample_variable():1031 [1] Resampling lopc_LCcount with frequency 1S following 3 point median filter INFO 2025-06-26 17:23:12,750 resample.py resample_variable():1038 [1] Padding lopc_LCcount with 0 days 04:22:46.301231104 of NaNs to the end of mission INFO 2025-06-26 17:23:12,759 resample.py resample_variable():1031 [1] Resampling lopc_flowSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 17:23:12,759 resample.py resample_variable():1038 [1] Padding lopc_flowSpeed with 0 days 04:22:46.301231104 of NaNs to the end of mission INFO 2025-06-26 17:23:12,790 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 17:23:13,010 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2011.061.00/dorado_2011.061.00_1S.nc INFO 2025-06-26 17:23:14,446 create_products.py gulper_odv():401 [1] No gulper times found for 2011.061.00 INFO 2025-06-26 17:23:14,446 process.py archive():337 [1] Archiving steps for 2011.061.00 INFO 2025-06-26 17:23:14,446 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2011.061.00/dorado_2011.061.00, BASE_PATH = /data/auv_data INFO 2025-06-26 17:23:14,448 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2011.061.00/dorado_2011.061.00 files to /Volumes/AUVCTD/surveys/2011/netcdf INFO 2025-06-26 17:23:14,449 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2011/netcdf/dorado_2011.061.00_1S.nc INFO 2025-06-26 17:23:14,472 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.061.00/dorado_2011.061.00_1S.nc /Volumes/AUVCTD/surveys/2011/netcdf done. INFO 2025-06-26 17:23:14,473 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2011/netcdf/dorado_2011.061.00_cal.nc INFO 2025-06-26 17:23:14,586 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.061.00/dorado_2011.061.00_cal.nc /Volumes/AUVCTD/surveys/2011/netcdf done. INFO 2025-06-26 17:23:14,587 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2011/netcdf/dorado_2011.061.00_align.nc INFO 2025-06-26 17:23:14,735 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.061.00/dorado_2011.061.00_align.nc /Volumes/AUVCTD/surveys/2011/netcdf done. INFO 2025-06-26 17:23:14,756 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.061.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011061/2011.061.00 done. INFO 2025-06-26 17:23:14,776 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.061.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011061/2011.061.00 done. INFO 2025-06-26 17:23:14,781 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.061.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011061/2011.061.00 done. INFO 2025-06-26 17:23:14,800 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.061.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011061/2011.061.00 done. INFO 2025-06-26 17:23:14,851 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.061.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011061/2011.061.00 done. INFO 2025-06-26 17:23:14,857 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.061.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011061/2011.061.00 done. INFO 2025-06-26 17:23:14,878 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.061.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011061/2011.061.00 done. INFO 2025-06-26 17:23:14,897 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.061.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011061/2011.061.00 done. INFO 2025-06-26 17:23:14,943 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.061.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011061/2011.061.00 done. INFO 2025-06-26 17:23:14,950 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.061.00/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011061/2011.061.00 done. INFO 2025-06-26 17:23:14,950 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 17:23:14,950 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.061.00/dorado_2011.061.00_processing.log /Volumes/AUVCTD/surveys/2011/netcdf