INFO 2025-03-02 19:36:51,460 logs2netcdfs.py download_process_logs():664 [7603] src_dir = PosixPath('/Users/mccann/GitHub/auv-python/data/auv_data/Dorado389/missionlogs') INFO 2025-03-02 19:36:51,460 logs2netcdfs.py download_process_logs():700 [7603] Processing mission: Dorado389 2011.256.02 INFO 2025-03-02 19:36:51,460 logs2netcdfs.py download_process_logs():709 [7603] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/Dorado389/missionlogs/2011.256.02/ctdDriver.log (697830 bytes) INFO 2025-03-02 19:36:51,513 logs2netcdfs.py download_process_logs():709 [7603] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/Dorado389/missionlogs/2011.256.02/ctdDriver2.log (697823 bytes) INFO 2025-03-02 19:36:51,564 logs2netcdfs.py download_process_logs():709 [7603] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/Dorado389/missionlogs/2011.256.02/gps.log (28220 bytes) INFO 2025-03-02 19:36:51,571 logs2netcdfs.py download_process_logs():709 [7603] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/Dorado389/missionlogs/2011.256.02/hydroscatlog.log (617506 bytes) INFO 2025-03-02 19:36:51,634 logs2netcdfs.py download_process_logs():709 [7603] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/Dorado389/missionlogs/2011.256.02/navigation.log (2463366 bytes) INFO 2025-03-02 19:36:51,800 logs2netcdfs.py download_process_logs():709 [7603] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/Dorado389/missionlogs/2011.256.02/isuslog.log (56309 bytes) INFO 2025-03-02 19:36:51,807 logs2netcdfs.py download_process_logs():709 [7603] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/Dorado389/missionlogs/2011.256.02/parosci.log (749750 bytes) INFO 2025-03-02 19:36:51,864 logs2netcdfs.py download_process_logs():709 [7603] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/Dorado389/missionlogs/2011.256.02/tailCone.log (442843 bytes) INFO 2025-03-02 19:36:51,918 logs2netcdfs.py download_process_logs():709 [7603] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/Dorado389/missionlogs/2011.256.02/biolume.log (518154 bytes) INFO 2025-03-02 19:36:51,969 logs2netcdfs.py write_variables():523 [7603] Expanding original timeTag to time60Hz variable for raw data INFO 2025-03-02 19:36:51,984 logs2netcdfs.py download_process_logs():726 [7603] Time to process: 0.52 seconds INFO 2025-03-02 19:36:51,984 lopcToNetCDF.py main():2274 [7603] Processing begun: Sun Mar 2 19:36:51 2025 INFO 2025-03-02 19:36:51,984 lopcToNetCDF.py constructTimestampList():1293 [7603] parosci_nc = /Users/mccann/GitHub/auv-python/data/auv_data/Dorado389/missionnetcdfs/2011.256.02/parosci.nc INFO 2025-03-02 19:36:51,984 lopcToNetCDF.py constructTimestampList():1294 [7603] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-03-02 19:36:51,985 lopcToNetCDF.py constructTimestampList():1297 [7603] /Users/mccann/GitHub/auv-python/data/auv_data/Dorado389/missionnetcdfs/2011.256.02/parosci.nc INFO 2025-03-02 19:36:51,985 lopcToNetCDF.py constructTimestampList():1314 [7603] From associated parosci.nc file: sensor_on_time = 1315951939.7, sensor_off_time = 1315953783.5 INFO 2025-03-02 19:36:51,986 lopcToNetCDF.py constructTimestampList():1318 [7603] Duration is 1843 seconds. Expecting to read 3686 L frames from the lopc.bin file. INFO 2025-03-02 19:36:51,986 lopcToNetCDF.py constructTimestampList():1328 [7603] recCount not passed in, assuming we'll have 3686 records from the lopc.bin file. INFO 2025-03-02 19:36:52,002 lopcToNetCDF.py main():2296 [7603] Examined sibling parosci.nc file to find startTime = 2011-09-13 22:12:19 Z and endTime = 2011-09-13 22:43:03 Z with 3686 records expected to be read from lopc.bin INFO 2025-03-02 19:36:52,002 lopcToNetCDF.py unpackLOPCbin():723 [7603] >>> Unpacking LOPC data from /Users/mccann/GitHub/auv-python/data/auv_data/Dorado389/missionlogs/2011.256.02/lopc.bin INFO 2025-03-02 19:36:52,002 lopcToNetCDF.py unpackLOPCbin():724 [7603] >>> Will write to NetCDF file /Users/mccann/GitHub/auv-python/data/auv_data/Dorado389/missionnetcdfs/2011.256.02/lopc.nc INFO 2025-03-02 19:36:52,002 lopcToNetCDF.py openNetCDFFile():1850 [7603] Will output NetCDF file to /Users/mccann/GitHub/auv-python/data/auv_data/Dorado389/missionnetcdfs/2011.256.02/lopc.nc INFO 2025-03-02 19:36:52,002 lopcToNetCDF.py openNetCDFFile():1880 [7603] missionName = 2011.256.02 INFO 2025-03-02 19:36:52,002 lopcToNetCDF.py openNetCDFFile():1899 [7603] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 ERROR 2025-03-02 19:36:52,010 process.py download_process():205 [7603] UnexpectedAreaOfCode: Encountered unexpected area of code - lopc.nc file is probably corrupt INFO 2025-03-02 19:36:52,064 calibrate.py _nudge_pos():1570 [7603] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-03-02 19:36:52,066 calibrate.py _nudge_pos():1594 [7603] - - - 0 0.00 - - - INFO 2025-03-02 19:36:52,282 calibrate.py _nudge_pos():1691 [7603] 56: 0.200 0.0000033 0.0000307 34 0.11 4.469 51.695 2011-09-13T22:13:19.326705920 INFO 2025-03-02 19:36:54,329 calibrate.py _nudge_pos():1691 [7603] 325: 0.210 0.0036709 -0.0028250 7289 24.29 22.413 -21.548 2011-09-13T22:42:05.318467584 INFO 2025-03-02 19:36:54,430 calibrate.py _nudge_pos():1691 [7603] 338: 0.200 0.0000072 0.0000039 19 0.06 17.879 12.108 2011-09-13T22:42:21.327371008 INFO 2025-03-02 19:36:54,738 calibrate.py _nudge_pos():1748 [7603] 344: - - - 4 0.01 - - INFO 2025-03-02 19:36:54,738 calibrate.py _nudge_pos():1754 [7603] Points in final series = 8922 WARNING 2025-03-02 19:36:54,747 calibrate.py _depth_process():2058 [7603] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-03-02 19:36:54,808 calibrate.py _geometric_depth_correction():3245 [7603] hs2: d_beg_time_diff: 8 seconds, d_end_time_diff: -1 seconds, INFO 2025-03-02 19:36:54,859 calibrate.py _geometric_depth_correction():3245 [7603] ctd1: d_beg_time_diff: 28 seconds, d_end_time_diff: -1 seconds, INFO 2025-03-02 19:36:54,893 calibrate.py _geometric_depth_correction():3245 [7603] ctd1: d_beg_time_diff: 28 seconds, d_end_time_diff: -1 seconds, INFO 2025-03-02 19:36:54,894 calibrate.py _ctd_process():2767 [7603] Performing range checking of ['ctd1_salinity'] in 2011.256.02/ctd1.nc INFO 2025-03-02 19:36:54,894 calibrate.py _range_qc_combined_nc():880 [7603] Setting 0 ctd1_salinity values to NaN INFO 2025-03-02 19:36:54,895 calibrate.py _range_qc_combined_nc():894 [7603] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-03-02 19:36:54,895 calibrate.py _range_qc_combined_nc():920 [7603] Done range checking ctd1 INFO 2025-03-02 19:36:54,940 calibrate.py _geometric_depth_correction():3245 [7603] ctd2: d_beg_time_diff: 28 seconds, d_end_time_diff: 0 seconds, INFO 2025-03-02 19:36:54,974 calibrate.py _geometric_depth_correction():3245 [7603] ctd2: d_beg_time_diff: 28 seconds, d_end_time_diff: 0 seconds, INFO 2025-03-02 19:36:54,975 calibrate.py _ctd_process():2767 [7603] Performing range checking of ['ctd2_salinity'] in 2011.256.02/ctd2.nc INFO 2025-03-02 19:36:54,976 calibrate.py _range_qc_combined_nc():880 [7603] Setting 95 ctd2_salinity values to NaN INFO 2025-03-02 19:36:54,976 calibrate.py _range_qc_combined_nc():894 [7603] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-03-02 19:36:54,976 calibrate.py _range_qc_combined_nc():920 [7603] Done range checking ctd2 INFO 2025-03-02 19:36:54,980 calibrate.py _biolume_process():2959 [7603] Checking for non-monotonic increasing time60hz INFO 2025-03-02 19:36:55,046 calibrate.py _biolume_process():2962 [7603] Removing non-monotonic increasing time60hz at indices: [ 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152] INFO 2025-03-02 19:36:55,057 calibrate.py _geometric_depth_correction():3245 [7603] biolume: d_beg_time_diff: 1 seconds, d_end_time_diff: 0 seconds, ERROR 2025-03-02 19:36:56,213 calibrate.py process_logs():3366 [7603] Error processing lopc: lopc has no time coordinate - likely an incomplete lopc.nc file in missionlogs/2011.256.02 ERROR 2025-03-02 19:36:56,213 calibrate.py process_logs():3366 [7603] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2011.256.02 INFO 2025-03-02 19:36:56,218 calibrate.py write_netcdf():3332 [7603] Writing calibrated instrument data to /Users/mccann/GitHub/auv-python/data/auv_data/Dorado389/missionnetcdfs/2011.256.02/Dorado389_2011.256.02_cal.nc INFO 2025-03-02 19:36:56,246 calibrate.py write_netcdf():3336 [7603] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-03-02 19:36:56,267 align.py process_cal():139 [7603] Processing Dorado389_2011.256.02_cal.nc from /Users/mccann/GitHub/auv-python/data/auv_data/Dorado389/missionnetcdfs/2011.256.02 INFO 2025-03-02 19:36:56,270 align.py process_cal():215 [7603] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-03-02 19:36:56,271 align.py process_cal():279 [7603] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-03-02 19:36:56,279 align.py process_cal():215 [7603] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-03-02 19:36:56,280 align.py process_cal():279 [7603] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-03-02 19:36:56,287 align.py process_cal():215 [7603] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-03-02 19:36:56,287 align.py process_cal():279 [7603] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-03-02 19:36:56,292 align.py process_cal():161 [7603] Skipping navigation_posx INFO 2025-03-02 19:36:56,292 align.py process_cal():161 [7603] Skipping navigation_posy INFO 2025-03-02 19:36:56,295 align.py process_cal():215 [7603] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-03-02 19:36:56,296 align.py process_cal():279 [7603] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-03-02 19:36:56,303 align.py process_cal():215 [7603] Using pitch corrected hs2_depth: Variable depth_filtdepth from Dorado389_2011.256.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-03-02 19:36:56,304 align.py process_cal():279 [7603] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-03-02 19:36:56,311 align.py process_cal():215 [7603] Using pitch corrected hs2_depth: Variable depth_filtdepth from Dorado389_2011.256.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-03-02 19:36:56,312 align.py process_cal():279 [7603] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-03-02 19:36:56,318 align.py process_cal():215 [7603] Using pitch corrected hs2_depth: Variable depth_filtdepth from Dorado389_2011.256.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-03-02 19:36:56,320 align.py process_cal():279 [7603] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-03-02 19:36:56,327 align.py process_cal():215 [7603] Using pitch corrected ctd1_depth: Variable depth_filtdepth from Dorado389_2011.256.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-03-02 19:36:56,328 align.py process_cal():279 [7603] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-03-02 19:36:56,336 align.py process_cal():215 [7603] Using pitch corrected ctd1_depth: Variable depth_filtdepth from Dorado389_2011.256.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-03-02 19:36:56,337 align.py process_cal():279 [7603] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-03-02 19:36:56,345 align.py process_cal():215 [7603] Using pitch corrected ctd1_depth: Variable depth_filtdepth from Dorado389_2011.256.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-03-02 19:36:56,346 align.py process_cal():279 [7603] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-03-02 19:36:56,353 align.py process_cal():215 [7603] Using pitch corrected ctd1_depth: Variable depth_filtdepth from Dorado389_2011.256.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-03-02 19:36:56,354 align.py process_cal():279 [7603] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-03-02 19:36:56,362 align.py process_cal():215 [7603] Using pitch corrected ctd1_depth: Variable depth_filtdepth from Dorado389_2011.256.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-03-02 19:36:56,363 align.py process_cal():279 [7603] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-03-02 19:36:56,371 align.py process_cal():215 [7603] Using pitch corrected ctd1_depth: Variable depth_filtdepth from Dorado389_2011.256.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-03-02 19:36:56,372 align.py process_cal():279 [7603] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-03-02 19:36:56,379 align.py process_cal():215 [7603] Using pitch corrected ctd1_depth: Variable depth_filtdepth from Dorado389_2011.256.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-03-02 19:36:56,380 align.py process_cal():279 [7603] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-03-02 19:36:56,388 align.py process_cal():215 [7603] Using pitch corrected ctd1_depth: Variable depth_filtdepth from Dorado389_2011.256.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-03-02 19:36:56,388 align.py process_cal():279 [7603] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-03-02 19:36:56,396 align.py process_cal():215 [7603] Using pitch corrected ctd1_depth: Variable depth_filtdepth from Dorado389_2011.256.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-03-02 19:36:56,397 align.py process_cal():279 [7603] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-03-02 19:36:56,405 align.py process_cal():215 [7603] Using pitch corrected ctd1_depth: Variable depth_filtdepth from Dorado389_2011.256.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-03-02 19:36:56,406 align.py process_cal():279 [7603] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-03-02 19:36:56,413 align.py process_cal():215 [7603] Using pitch corrected ctd1_depth: Variable depth_filtdepth from Dorado389_2011.256.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-03-02 19:36:56,414 align.py process_cal():279 [7603] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-03-02 19:36:56,422 align.py process_cal():215 [7603] Using pitch corrected ctd2_depth: Variable depth_filtdepth from Dorado389_2011.256.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-03-02 19:36:56,423 align.py process_cal():279 [7603] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-03-02 19:36:56,431 align.py process_cal():215 [7603] Using pitch corrected ctd2_depth: Variable depth_filtdepth from Dorado389_2011.256.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-03-02 19:36:56,432 align.py process_cal():279 [7603] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-03-02 19:36:56,439 align.py process_cal():215 [7603] Using pitch corrected ctd2_depth: Variable depth_filtdepth from Dorado389_2011.256.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-03-02 19:36:56,440 align.py process_cal():279 [7603] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-03-02 19:36:56,448 align.py process_cal():215 [7603] Using pitch corrected ctd2_depth: Variable depth_filtdepth from Dorado389_2011.256.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-03-02 19:36:56,449 align.py process_cal():279 [7603] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-03-02 19:36:56,456 align.py process_cal():215 [7603] Using pitch corrected ctd2_depth: Variable depth_filtdepth from Dorado389_2011.256.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-03-02 19:36:56,457 align.py process_cal():279 [7603] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-03-02 19:36:56,464 align.py process_cal():215 [7603] Using pitch corrected ctd2_depth: Variable depth_filtdepth from Dorado389_2011.256.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-03-02 19:36:56,465 align.py process_cal():279 [7603] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-03-02 19:36:56,473 align.py process_cal():215 [7603] Using pitch corrected ctd2_depth: Variable depth_filtdepth from Dorado389_2011.256.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-03-02 19:36:56,474 align.py process_cal():279 [7603] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-03-02 19:36:56,482 align.py process_cal():215 [7603] Using pitch corrected ctd2_depth: Variable depth_filtdepth from Dorado389_2011.256.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-03-02 19:36:56,483 align.py process_cal():279 [7603] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-03-02 19:36:56,492 align.py process_cal():279 [7603] isus_nitrate: instrument_sample_rate_hz = 0.99 INFO 2025-03-02 19:36:56,500 align.py process_cal():279 [7603] isus_temp: instrument_sample_rate_hz = 0.99 INFO 2025-03-02 19:36:56,508 align.py process_cal():279 [7603] isus_quality: instrument_sample_rate_hz = 0.99 INFO 2025-03-02 19:36:56,517 align.py process_cal():279 [7603] biolume_flow: instrument_sample_rate_hz = 0.98 INFO 2025-03-02 19:36:56,526 align.py process_cal():279 [7603] biolume_avg_biolume: instrument_sample_rate_hz = 0.98 INFO 2025-03-02 19:36:56,537 align.py process_cal():279 [7603] biolume_raw: instrument_sample_rate_hz = 59.00 INFO 2025-03-02 19:36:56,569 align.py process_cal():279 [7603] tailcone_propRpm: instrument_sample_rate_hz = 5.00 WARNING 2025-03-02 19:36:56,602 align.py global_metadata():76 [7603] Could not save time_coverage_duration - likely because all data are bad and min_time and max_time were not set INFO 2025-03-02 19:36:56,603 align.py write_netcdf():374 [7603] Writing aligned data to /Users/mccann/GitHub/auv-python/data/auv_data/Dorado389/missionnetcdfs/2011.256.02/Dorado389_2011.256.02_align.nc INFO 2025-03-02 19:36:56,639 align.py write_netcdf():379 [7603] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-03-02 19:36:56,773 archive.py copy_to_AUVTCD():53 [7603] Archiving /Users/mccann/GitHub/auv-python/data/auv_data/Dorado389/missionnetcdfs/2011.256.02/Dorado389_2011.256.02 files to /Volumes/AUVCTD/surveys/2011/netcdf INFO 2025-03-02 19:37:03,269 archive.py copy_to_AUVTCD():98 [7603] rsync /Users/mccann/GitHub/auv-python/data/auv_data/Dorado389/missionnetcdfs/2011.256.02/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011256/2011.256.02 done. INFO 2025-03-02 19:37:09,017 archive.py copy_to_AUVTCD():98 [7603] rsync /Users/mccann/GitHub/auv-python/data/auv_data/Dorado389/missionnetcdfs/2011.256.02/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011256/2011.256.02 done. INFO 2025-03-02 19:37:11,351 archive.py copy_to_AUVTCD():98 [7603] rsync /Users/mccann/GitHub/auv-python/data/auv_data/Dorado389/missionnetcdfs/2011.256.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011256/2011.256.02 done. INFO 2025-03-02 19:37:16,828 archive.py copy_to_AUVTCD():98 [7603] rsync /Users/mccann/GitHub/auv-python/data/auv_data/Dorado389/missionnetcdfs/2011.256.02/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011256/2011.256.02 done. INFO 2025-03-02 19:37:32,954 archive.py copy_to_AUVTCD():98 [7603] rsync /Users/mccann/GitHub/auv-python/data/auv_data/Dorado389/missionnetcdfs/2011.256.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011256/2011.256.02 done. INFO 2025-03-02 19:37:35,320 archive.py copy_to_AUVTCD():98 [7603] rsync /Users/mccann/GitHub/auv-python/data/auv_data/Dorado389/missionnetcdfs/2011.256.02/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011256/2011.256.02 done. INFO 2025-03-02 19:37:42,007 archive.py copy_to_AUVTCD():98 [7603] rsync /Users/mccann/GitHub/auv-python/data/auv_data/Dorado389/missionnetcdfs/2011.256.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011256/2011.256.02 done. INFO 2025-03-02 19:37:47,488 archive.py copy_to_AUVTCD():98 [7603] rsync /Users/mccann/GitHub/auv-python/data/auv_data/Dorado389/missionnetcdfs/2011.256.02/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011256/2011.256.02 done. INFO 2025-03-02 19:38:02,846 archive.py copy_to_AUVTCD():98 [7603] rsync /Users/mccann/GitHub/auv-python/data/auv_data/Dorado389/missionnetcdfs/2011.256.02/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011256/2011.256.02 done. INFO 2025-03-02 19:38:02,846 archive.py copy_to_AUVTCD():103 [7603] Archiving product files INFO 2025-03-02 19:38:02,846 archive.py copy_to_AUVTCD():125 [7603] rsync /Users/mccann/GitHub/auv-python/data/auv_data/Dorado389/missionnetcdfs/2011.256.02/Dorado389_2011.256.02_processing.log /Volumes/AUVCTD/surveys/2011/netcdf