INFO 2025-06-26 17:10:00,746 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 17:10:00,746 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Inner-bay survey fifteenth - Daytime run - ctdToUse = ctd1 INFO 2025-06-26 17:10:00,746 process.py process_mission():449 [1] Processing AUVCTD mission 2010.301.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 17:10:00,746 process.py download_process():165 [1] Download and processing steps for 2010.301.00 INFO 2025-06-26 17:10:00,746 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2010/2010301/2010.301.00 INFO 2025-06-26 17:10:00,746 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2010/2010301/2010.301.00 to /data/auv_data/dorado/missionlogs/2010.301.00 INFO 2025-06-26 17:10:03,995 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2010.301.00 INFO 2025-06-26 17:10:03,996 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.301.00/ctdDriver.log (4703147 bytes) INFO 2025-06-26 17:10:04,320 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.301.00/ctdDriver.log: [ 177 204 311 668 706 935 1041 1092 1252 1318 1433 1481 1514 1616 2519 3366 3409 3899 3964 4802 6556 6881 7122 7642 10050 10740 12155 12835 13578 18240 20393 26379 28522 28691 32809 33501 35219 42212 43973 45881] INFO 2025-06-26 17:10:04,332 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.301.00/ctdDriver2.log (4707071 bytes) INFO 2025-06-26 17:10:04,667 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.301.00/ctdDriver2.log: [ 48 133 259 268 367 476 703 722 760 1093 1143 1481 1529 1562 2567 3414 3947 4012 4850 6605 6738 6931 7173 7693 10100 10787 12203 12882 13625 18284 18387 20437 23702 26420 28563 28733 29103 32850 33542 35259 35517 37429 42810 44012 45920] INFO 2025-06-26 17:10:04,685 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.301.00/gps.log (71204 bytes) INFO 2025-06-26 17:10:04,700 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.301.00/hydroscatlog.log (4130638 bytes) INFO 2025-06-26 17:10:05,140 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.301.00/hydroscatlog.log: [ 1 2 26 27 116 119 128 285 450 570 730 766 1068 1086 1177 1228 1389 1455 1619 1696 1842 1852 2085 2429 2662 2713 3125 3512 3578 3808 4601 4697 4748 5257 5661 5887 5912 7037 7279 7730 7799 7844 7901 8271 10037 10038 10210 10264 11704 12996 13835 14144 15028 15829 17624 17661 18406 18509 18740 19494 21382 22953 23072 23732 23831 25132 25861 26550 28107 28694 28863 29234 30057 30168 30780 32982 33675 35393 35760 37064 40103 40965 42460 42948 43612 43851 44762 47228] INFO 2025-06-26 17:10:05,152 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.301.00/navigation.log (14415478 bytes) INFO 2025-06-26 17:10:06,236 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.301.00/isuslog.log (304885 bytes) INFO 2025-06-26 17:10:06,270 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.301.00/parosci.log (5372054 bytes) INFO 2025-06-26 17:10:06,732 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.301.00/tailCone.log (2931643 bytes) INFO 2025-06-26 17:10:07,103 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.301.00/biolume.log (3440798 bytes) INFO 2025-06-26 17:10:07,441 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 17:10:07,628 logs2netcdfs.py download_process_logs():807 [1] Time to process: 3.63 seconds INFO 2025-06-26 17:10:07,628 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2010.301.00/lopc.bin (52135000 bytes) INFO 2025-06-26 17:10:07,628 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 17:10:07 2025 INFO 2025-06-26 17:10:07,629 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2010.301.00/parosci.nc INFO 2025-06-26 17:10:07,629 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 17:10:07,629 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2010.301.00/parosci.nc INFO 2025-06-26 17:10:07,632 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1288289305.8, sensor_off_time = 1288301613.9 INFO 2025-06-26 17:10:07,632 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 12308 seconds. Expecting to read 24616 L frames from the lopc.bin file. INFO 2025-06-26 17:10:07,632 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 24616 records from the lopc.bin file. INFO 2025-06-26 17:10:07,779 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2010-10-28 18:08:25 Z and endTime = 2010-10-28 21:33:33 Z with 24616 records expected to be read from lopc.bin INFO 2025-06-26 17:10:07,779 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2010.301.00/lopc.bin INFO 2025-06-26 17:10:07,779 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2010.301.00/lopc.nc INFO 2025-06-26 17:10:07,780 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2010.301.00/lopc.nc INFO 2025-06-26 17:10:07,780 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2010.301.00 INFO 2025-06-26 17:10:07,781 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 INFO 2025-06-26 17:10:07,823 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 17:10:07,823 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 17:10:07,823 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ ERROR 2025-06-26 17:10:24,133 lopcToNetCDF.py main():2340 [1] UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8c in position 0: invalid start byte INFO 2025-06-26 17:10:24,133 lopcToNetCDF.py main():2341 [1] Failed to decode all of lopc.bin - resulting lopc.nc file likely incomplete INFO 2025-06-26 17:10:24,133 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2010.301.00/parosci.nc INFO 2025-06-26 17:10:24,133 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 17:10:24,133 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2010.301.00/parosci.nc INFO 2025-06-26 17:10:24,137 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1288289305.8, sensor_off_time = 1288301613.9 INFO 2025-06-26 17:10:24,137 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 12308 seconds. Expecting to read 24616 L frames from the lopc.bin file. INFO 2025-06-26 17:10:24,137 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 24616 records from the lopc.bin file. INFO 2025-06-26 17:10:24,137 lopcToNetCDF.py constructTimestampList():1340 [1] Calling correctSampleCountList() with sampleCountList[0] = 1 and len(sampleCountList) = 6116 INFO 2025-06-26 17:10:24,138 lopcToNetCDF.py correctSampleCountList():1737 [1] Found overflows at indices: [] INFO 2025-06-26 17:10:24,138 lopcToNetCDF.py correctSampleCountList():1745 [1] Original sampleCountList = [ 1 2 3 ... 6115 6116 6117] INFO 2025-06-26 17:10:24,138 lopcToNetCDF.py correctSampleCountList():1746 [1] Found 0 0 values at indices: [] INFO 2025-06-26 17:10:24,138 lopcToNetCDF.py correctSampleCountList():1779 [1] Found 0 stuck values at indices: [] INFO 2025-06-26 17:10:24,138 lopcToNetCDF.py deSpike():1588 [1] d_sampleCountList = [1 1 1 ... 2 1 1] INFO 2025-06-26 17:10:24,138 lopcToNetCDF.py deSpike():1590 [1] Found 0 spike indicators at indices: [] INFO 2025-06-26 17:10:24,138 lopcToNetCDF.py correctSampleCountList():1805 [1] After despike() sampleCountList = [ 1 2 3 ... 6115 6116 6117] INFO 2025-06-26 17:10:24,139 lopcToNetCDF.py constructTimestampList():1347 [1] correctSampleCountList() returned correctedSampleCountList = [ 1 2 3 ... 6115 6116 6117] with len(correctedSampleCountList) = 6116 INFO 2025-06-26 17:10:24,139 lopcToNetCDF.py constructTimestampList():1358 [1] Subtracting 1 from all values of correctedSampleCountList INFO 2025-06-26 17:10:24,139 lopcToNetCDF.py constructTimestampList():1363 [1] Constructing timestampArray from instrument corrected sampleCount and constant deltaT = 0.500000 INFO 2025-06-26 17:10:24,139 lopcToNetCDF.py constructTimestampList():1368 [1] New re-zeroed correctedSampleCountList = [0.0000e+00 5.0000e-01 1.0000e+00 ... 3.0570e+03 3.0575e+03 3.0580e+03] INFO 2025-06-26 17:10:24,139 lopcToNetCDF.py constructTimestampList():1379 [1] timestampArray = [1.28828931e+09 1.28828931e+09 1.28828931e+09 ... 1.28829236e+09 1.28829236e+09 1.28829236e+09] INFO 2025-06-26 17:10:24,139 lopcToNetCDF.py constructTimestampList():1380 [1] timestampArray[:2] = [1288289305.8 1288289306.3, ..., timestampArray[-2:] = 1288292363.3 1288292363.8] INFO 2025-06-26 17:10:24,146 lopcToNetCDF.py constructTimestampList():1389 [1] timestampList[:2] = [np.float64(1288289305.8129752), np.float64(1288289306.3129752)], ..., timestampList[-2:] = [np.float64(1288292363.3129752), np.float64(1288292363.8129752)]] INFO 2025-06-26 17:10:24,146 lopcToNetCDF.py constructTimestampList():1394 [1] Subsampling correctedSampleCountList (len = 6116) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 17:10:24,146 lopcToNetCDF.py constructTimestampList():1399 [1] lFrameCountWrittenList[:2] = [20, 41], ... lFrameCountWrittenList[-2:] = [6089, 6110] INFO 2025-06-26 17:10:24,146 lopcToNetCDF.py constructTimestampList():1420 [1] len(subSampledCorrectedSampleCountList) = 291 INFO 2025-06-26 17:10:24,146 lopcToNetCDF.py constructTimestampList():1439 [1] len(timestampList) = 6116 INFO 2025-06-26 17:10:24,146 lopcToNetCDF.py constructTimestampList():1440 [1] timestampList[:2] = [np.float64(1288289305.8129752), np.float64(1288289306.3129752)], ..., timestampList[-2:] = [np.float64(1288292363.3129752), np.float64(1288292363.8129752)]] INFO 2025-06-26 17:10:24,146 lopcToNetCDF.py constructTimestampList():1446 [1] Subsampling timestampList (len = 6116) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 17:10:24,146 lopcToNetCDF.py constructTimestampList():1457 [1] Taking indices [[np.int32(19), np.int32(40)] ... [np.int32(6088), np.int32(6109)]] from timestampList to create subSampledTimestampList INFO 2025-06-26 17:10:24,146 lopcToNetCDF.py constructTimestampList():1463 [1] len(subSampledTimestampList) = 291 INFO 2025-06-26 17:10:24,147 lopcToNetCDF.py constructTimestampList():1477 [1] Finding elements of cFrameEsecsList that != -9999 INFO 2025-06-26 17:10:24,152 lopcToNetCDF.py closeNetCDFFile():2096 [1] Writing time axis for len(tsList) = 291 INFO 2025-06-26 17:10:24,153 lopcToNetCDF.py closeNetCDFFile():2099 [1] tsList[:1] = [np.float64(1288289315.3129752)], ..., tsList[-2:] = [np.float64(1288292349.8129752), np.float64(1288292360.3129752)] INFO 2025-06-26 17:10:24,153 lopcToNetCDF.py closeNetCDFFile():2100 [1] Begin time = 2010-10-28 18:08:35 Z INFO 2025-06-26 17:10:24,153 lopcToNetCDF.py closeNetCDFFile():2103 [1] End time = 2010-10-28 18:59:20 Z INFO 2025-06-26 17:10:24,153 lopcToNetCDF.py closeNetCDFFile():2107 [1] Writing time axis for len(cFrameEsecsList) = 291 INFO 2025-06-26 17:10:24,153 lopcToNetCDF.py closeNetCDFFile():2111 [1] cFrameEsecsList[:1] = [1.28828932e+09], ..., cFrameEsecsList[-2:] = [1.28829235e+09 1.28829236e+09] INFO 2025-06-26 17:10:24,153 lopcToNetCDF.py closeNetCDFFile():2116 [1] Begin time = 2010-10-28 18:08:36 Z INFO 2025-06-26 17:10:24,153 lopcToNetCDF.py closeNetCDFFile():2120 [1] End time = 2010-10-28 18:59:20 Z INFO 2025-06-26 17:10:24,157 lopcToNetCDF.py main():2381 [1] Created file: /data/auv_data/dorado/missionnetcdfs/2010.301.00/lopc.nc INFO 2025-06-26 17:10:24,157 lopcToNetCDF.py main():2384 [1] Processing finished: Thu Jun 26 17:10:24 2025 Elapsed processing time from start of processing = 16 seconds INFO 2025-06-26 17:10:24,158 process.py calibrate():227 [1] Calibration steps for 2010.301.00 INFO 2025-06-26 17:10:24,301 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 17:10:24,303 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 17:10:25,419 calibrate.py _nudge_pos():1806 [1] 155: 0.160 0.0005088 -0.0004839 893 3.06 24.637 -29.273 2010-10-28T18:13:58.880158464 INFO 2025-06-26 17:10:26,230 calibrate.py _nudge_pos():1806 [1] 241: 0.170 -0.0015807 -0.0007112 2772 9.38 -24.994 -14.049 2010-10-28T18:24:46.875767808 INFO 2025-06-26 17:10:27,062 calibrate.py _nudge_pos():1806 [1] 329: 0.170 -0.0030486 -0.0011620 6103 20.45 -22.110 -10.531 2010-10-28T18:46:40.875752704 INFO 2025-06-26 17:10:27,906 calibrate.py _nudge_pos():1806 [1] 419: 0.170 -0.0018522 -0.0004610 5173 17.31 -15.861 -4.934 2010-10-28T19:05:28.878479104 INFO 2025-06-26 17:10:27,926 calibrate.py _nudge_pos():1806 [1] 421: 0.160 0.0000143 -0.0000272 20 0.06 33.544 -79.697 2010-10-28T19:05:33.878136576 INFO 2025-06-26 17:10:28,702 calibrate.py _nudge_pos():1806 [1] 504: 0.170 -0.0034455 -0.0013831 7161 23.95 -21.327 -10.703 2010-10-28T19:30:52.874078208 INFO 2025-06-26 17:10:29,513 calibrate.py _nudge_pos():1806 [1] 591: 0.180 -0.0033083 -0.0014506 7057 23.56 -20.806 -11.408 2010-10-28T19:55:52.871321344 INFO 2025-06-26 17:10:30,312 calibrate.py _nudge_pos():1806 [1] 675: 0.180 -0.0033671 -0.0013070 7879 26.31 -18.958 -9.204 2010-10-28T20:23:34.877466112 INFO 2025-06-26 17:10:31,096 calibrate.py _nudge_pos():1806 [1] 757: 0.180 -0.0040294 -0.0021716 8514 28.45 -20.981 -14.146 2010-10-28T20:53:22.874980096 INFO 2025-06-26 17:10:31,976 calibrate.py _nudge_pos():1806 [1] 849: 0.180 -0.0029834 -0.0022924 5980 19.98 -22.114 -21.260 2010-10-28T21:14:52.876608768 INFO 2025-06-26 17:10:32,866 calibrate.py _nudge_pos():1806 [1] 942: 0.190 -0.0024194 -0.0021185 4962 16.56 -21.630 -23.700 2010-10-28T21:32:58.872213248 INFO 2025-06-26 17:10:33,197 calibrate.py _nudge_pos():1862 [1] 932: - - - 5 0.01 - - INFO 2025-06-26 17:10:33,197 calibrate.py _nudge_pos():1868 [1] Points in final series = 61072 WARNING 2025-06-26 17:10:33,287 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 9.09 Hz INFO 2025-06-26 17:10:39,372 calibrate.py _hs2_process():2400 [1] Number of bad hs2 points: 1 of 49074 INFO 2025-06-26 17:10:39,743 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 13 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 17:10:43,213 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 43 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 17:10:43,582 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 43 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 17:10:43,584 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2010.301.00/ctd1.nc INFO 2025-06-26 17:10:43,585 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 17:10:43,586 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 17:10:43,586 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 17:10:46,302 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 29 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 17:10:46,665 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 29 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 17:10:46,667 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2010.301.00/ctd2.nc INFO 2025-06-26 17:10:46,668 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 17:10:46,669 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 17:10:46,669 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 17:10:46,692 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 17:10:47,287 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 61 62 ... 697803 697804 697805] INFO 2025-06-26 17:10:47,397 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 17:10:58,587 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.301.00 INFO 2025-06-26 17:10:58,637 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2010.301.00/dorado_2010.301.00_cal.nc INFO 2025-06-26 17:11:04,053 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_flowSpeed, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 17:11:04,060 process.py align():251 [1] Alignment steps for 2010.301.00 INFO 2025-06-26 17:11:04,096 align.py process_cal():139 [1] Processing dorado_2010.301.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2010.301.00 INFO 2025-06-26 17:11:04,117 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:11:04,120 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 17:11:04,166 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:11:04,169 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 17:11:04,217 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:11:04,221 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 17:11:04,248 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 17:11:04,248 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 17:11:04,265 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:11:04,269 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 17:11:04,315 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.301.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:11:04,318 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:11:04,358 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.301.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:11:04,362 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:11:04,404 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.301.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:11:04,408 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:11:04,448 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.301.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:11:04,452 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:11:04,493 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.301.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:11:04,497 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:11:04,536 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.301.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:11:04,540 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:11:04,581 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.301.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:11:04,585 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:11:04,625 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.301.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:11:04,629 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:11:04,671 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.301.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:11:04,675 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:11:04,714 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.301.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:11:04,718 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:11:04,760 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.301.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:11:04,763 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:11:04,804 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.301.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:11:04,808 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:11:04,848 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.301.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:11:04,852 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:11:04,894 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.301.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:11:04,897 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:11:04,938 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.301.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:11:04,942 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:11:04,982 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.301.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:11:04,986 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:11:05,028 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.301.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:11:05,032 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:11:05,073 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.301.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:11:05,077 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:11:05,118 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.301.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:11:05,122 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:11:05,163 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.301.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:11:05,166 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:11:05,208 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.301.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:11:05,212 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:11:05,252 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.301.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:11:05,255 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:11:05,305 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 17:11:05,342 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 17:11:05,379 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 17:11:05,417 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 0.98 INFO 2025-06-26 17:11:05,457 align.py process_cal():249 [1] biolume_avg_biolume: instrument_sample_rate_hz = 0.98 INFO 2025-06-26 17:11:05,511 align.py process_cal():249 [1] biolume_raw: instrument_sample_rate_hz = 58.87 INFO 2025-06-26 17:11:05,828 align.py process_cal():249 [1] lopc_countListSum: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 17:11:05,863 align.py process_cal():249 [1] lopc_transCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 17:11:05,898 align.py process_cal():249 [1] lopc_nonTransCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 17:11:05,931 align.py process_cal():249 [1] lopc_LCcount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 17:11:05,965 align.py process_cal():249 [1] lopc_flowSpeed: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 17:11:06,000 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 4.97 INFO 2025-06-26 17:11:06,036 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2010.301.00/dorado_2010.301.00_align.nc INFO 2025-06-26 17:11:06,163 align.py write_netcdf():342 [1] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_depth, lopc_flowSpeed, lopc_latitude, lopc_longitude, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 17:11:06,165 process.py resample():273 [1] Resampling steps for 2010.301.00 INFO 2025-06-26 17:11:06,166 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 17:11:06,201 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.301.00/dorado_2010.301.00_align.nc mission netCDF file INFO 2025-06-26 17:11:06,207 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.301.00/dorado_2010.301.00_align.nc mission netCDF file INFO 2025-06-26 17:11:06,208 resample.py get_mission_start_end():1145 [1] navigation: 2010-10-28T18:09:07.470121472 to 2010-10-28T21:33:33.879814912 (0 days 00:00:00.089993728 before mission_end) INFO 2025-06-26 17:11:06,210 resample.py get_mission_start_end():1145 [1] hs2 : 2010-10-28T18:08:39.052068352 to 2010-10-28T21:33:33.829818368 (0 days 00:00:00.139990272 before mission_end) INFO 2025-06-26 17:11:06,212 resample.py get_mission_start_end():1145 [1] ctd1 : 2010-10-28T18:09:09.220001536 to 2010-10-28T21:33:33.949809920 (0 days 00:00:00.019998720 before mission_end) INFO 2025-06-26 17:11:06,213 resample.py get_mission_start_end():1145 [1] ctd2 : 2010-10-28T18:08:55.250958336 to 2010-10-28T21:33:33.969808640 (0 days 00:00:00 before mission_end) INFO 2025-06-26 17:11:06,215 resample.py get_mission_start_end():1145 [1] isus : 2010-10-28T18:09:43.767634944 to 2010-10-28T21:33:33.829818368 (0 days 00:00:00.139990272 before mission_end) INFO 2025-06-26 17:11:06,216 resample.py get_mission_start_end():1145 [1] biolume : 2010-10-28T18:08:25.012995840 to 2010-10-28T21:33:33.329818368 (0 days 00:00:00.639990272 before mission_end) INFO 2025-06-26 17:11:06,217 resample.py get_mission_start_end():1145 [1] lopc : 2010-10-28T18:08:35.312975104 to 2010-10-28T18:59:20.312975104 (0 days 02:34:13.656833536 before mission_end) WARNING 2025-06-26 17:11:06,218 resample.py get_mission_start_end():1156 [1] Instrument lopc has a gap > 5 minutes at the end of the mission: 0 days 02:34:13.656833536 INFO 2025-06-26 17:11:06,219 resample.py get_mission_start_end():1145 [1] tailcone : 2010-10-28T18:08:42.631823104 to 2010-10-28T21:33:33.959809280 (0 days 00:00:00.009999360 before mission_end) INFO 2025-06-26 17:11:06,220 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.301.00/dorado_2010.301.00_align.nc mission netCDF file INFO 2025-06-26 17:11:06,221 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 17:11:06,367 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 17:11:06,394 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 17:11:06,420 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 17:11:06,446 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 17:11:06,470 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 17:11:06,494 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 17:11:06,517 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 17:11:06,540 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 17:11:06,562 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 17:11:06,583 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 17:11:06,604 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:11:06,625 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:11:06,652 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:11:06,674 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 17:11:06,695 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 17:11:06,716 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 17:11:06,737 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 17:11:06,761 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 17:11:06,784 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 17:11:06,808 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 17:11:06,831 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:11:06,854 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:11:06,877 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:11:06,901 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 17:11:06,915 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 17:11:06,927 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 17:11:06,939 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 17:11:06,950 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 17:11:06,960 resample.py resample_variable():1031 [1] Resampling biolume_avg_biolume with frequency 1S following 3 point median filter INFO 2025-06-26 17:11:06,964 resample.py set_proxy_parameters():520 [1] Setting biolume proxy parameters for period4 INFO 2025-06-26 17:11:06,964 resample.py add_biolume_proxies():549 [1] Adding biolume proxy variables computed from biolume_raw INFO 2025-06-26 17:11:07,422 resample.py add_biolume_proxies():595 [1] Using flash_threshold = 1.0000e+11 INFO 2025-06-26 17:11:07,516 resample.py add_biolume_proxies():633 [1] Zero flow values found: 12309 of 12309 - replaced with 350 ml/s INFO 2025-06-26 17:11:07,516 resample.py add_biolume_proxies():638 [1] Computing flashes per liter: nbflash_high, nbflash_low INFO 2025-06-26 17:11:07,564 resample.py add_biolume_proxies():666 [1] Saving flash intensity: biolume_intflash - the upper bound of the background envelope INFO 2025-06-26 17:11:07,586 resample.py add_biolume_proxies():683 [1] Saving Background bioluminescence (dinoflagellates proxy) INFO 2025-06-26 17:11:07,604 resample.py select_nighttime_bl_raw():432 [1] No sunset or sunrise found during this mission. INFO 2025-06-26 17:11:07,605 resample.py add_biolume_proxies():694 [1] No nighttime_bl_raw data to compute adinos, diatoms, hdinos proxies INFO 2025-06-26 17:11:07,620 resample.py resample_variable():1031 [1] Resampling lopc_countListSum with frequency 1S following 3 point median filter INFO 2025-06-26 17:11:07,620 resample.py resample_variable():1038 [1] Padding lopc_countListSum with 0 days 02:34:13.656833536 of NaNs to the end of mission INFO 2025-06-26 17:11:07,631 resample.py resample_variable():1031 [1] Resampling lopc_transCount with frequency 1S following 3 point median filter INFO 2025-06-26 17:11:07,631 resample.py resample_variable():1038 [1] Padding lopc_transCount with 0 days 02:34:13.656833536 of NaNs to the end of mission INFO 2025-06-26 17:11:07,640 resample.py resample_variable():1031 [1] Resampling lopc_nonTransCount with frequency 1S following 3 point median filter INFO 2025-06-26 17:11:07,640 resample.py resample_variable():1038 [1] Padding lopc_nonTransCount with 0 days 02:34:13.656833536 of NaNs to the end of mission INFO 2025-06-26 17:11:07,650 resample.py resample_variable():1031 [1] Resampling lopc_LCcount with frequency 1S following 3 point median filter INFO 2025-06-26 17:11:07,650 resample.py resample_variable():1038 [1] Padding lopc_LCcount with 0 days 02:34:13.656833536 of NaNs to the end of mission INFO 2025-06-26 17:11:07,659 resample.py resample_variable():1031 [1] Resampling lopc_flowSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 17:11:07,659 resample.py resample_variable():1038 [1] Padding lopc_flowSpeed with 0 days 02:34:13.656833536 of NaNs to the end of mission INFO 2025-06-26 17:11:07,685 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 17:11:07,882 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2010.301.00/dorado_2010.301.00_1S.nc INFO 2025-06-26 17:11:11,777 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-26 17:11:18,045 create_products.py gulper_odv():522 [1] Wrote 4 Gulper data lines to /data/auv_data/dorado/missionodvs/2010.301.00/dorado_2010.301.00_1S_Gulper.txt INFO 2025-06-26 17:11:18,045 process.py archive():337 [1] Archiving steps for 2010.301.00 INFO 2025-06-26 17:11:18,045 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2010.301.00/dorado_2010.301.00, BASE_PATH = /data/auv_data INFO 2025-06-26 17:11:18,047 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2010.301.00/dorado_2010.301.00 files to /Volumes/AUVCTD/surveys/2010/netcdf INFO 2025-06-26 17:11:18,047 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.301.00_1S.nc INFO 2025-06-26 17:11:18,063 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.301.00/dorado_2010.301.00_1S.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 17:11:18,064 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.301.00_cal.nc INFO 2025-06-26 17:11:18,147 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.301.00/dorado_2010.301.00_cal.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 17:11:18,148 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.301.00_align.nc INFO 2025-06-26 17:11:18,265 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.301.00/dorado_2010.301.00_align.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 17:11:18,284 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.301.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010301/2010.301.00 done. INFO 2025-06-26 17:11:18,301 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.301.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010301/2010.301.00 done. INFO 2025-06-26 17:11:18,306 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.301.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010301/2010.301.00 done. INFO 2025-06-26 17:11:18,322 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.301.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010301/2010.301.00 done. INFO 2025-06-26 17:11:18,363 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.301.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010301/2010.301.00 done. INFO 2025-06-26 17:11:18,369 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.301.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010301/2010.301.00 done. INFO 2025-06-26 17:11:18,387 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.301.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010301/2010.301.00 done. INFO 2025-06-26 17:11:18,401 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.301.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010301/2010.301.00 done. INFO 2025-06-26 17:11:18,436 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.301.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010301/2010.301.00 done. INFO 2025-06-26 17:11:18,451 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.301.00/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010301/2010.301.00 done. INFO 2025-06-26 17:11:18,452 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 17:11:18,453 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2010/odv/dorado_2010.301.00_1S_Gulper.txt INFO 2025-06-26 17:11:18,458 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2010.301.00/dorado_2010.301.00_1S_Gulper.txt /Volumes/AUVCTD/surveys/2010/odv done. INFO 2025-06-26 17:11:18,459 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.301.00/dorado_2010.301.00_processing.log /Volumes/AUVCTD/surveys/2010/netcdf